mRNA_D-mesarthrocarpus_Contig9425.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9425.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9425.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9425.3.1 vs. uniprot
Match: A0A2D6MVQ6_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6MVQ6_9DELT)

HSP 1 Score: 221 bits (563), Expect = 4.380e-71
Identity = 116/176 (65.91%), Postives = 135/176 (76.70%), Query Frame = 1 
Query:    1 MRDRTRVQKLMPLMREFGSLERKRLGAGVTPLEYQRWLDLKGQIGHSFAKSRRAGLQAMGGSEGKERPTRLLVEYRDREHLLESIVSNLQPAGFFVATPFAAEVGVTFSMRVSLEEEGEVADVPVVVATSISQGAHTLSTMSMGMSVKILKPTPAQGAGISKLFASQLDEKLGLNG 528
            M D TRVQ LMPLMREFG+LERKRLG+GV PLEYQRWLDLK QIG +F + +     A     G+ RPTRLLV Y+ R+ LL++I+ N++PAGFFV TPFAAEVGV F  RV++E EGE A++P VV TSI+QGAHTLSTMSMGM +KI KPTPAQGA ISKLF   LD  LG  G
Sbjct:    1 MADCTRVQHLMPLMREFGTLERKRLGSGVEPLEYQRWLDLKRQIGKTFNRGK-----ASSDKRGRARPTRLLVSYKTRQALLDAIIENIRPAGFFVPTPFAAEVGVRFLARVTVEVEGEAAEIPCVVVTSITQGAHTLSTMSMGMGLKIDKPTPAQGAAISKLFEHVLDSDLGFTG 171
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BLAST of mRNA_D-mesarthrocarpus_Contig9425.3.1 vs. uniprot
Match: A0A2E5YHE8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E5YHE8_9DELT)

HSP 1 Score: 128 bits (321), Expect = 3.500e-35
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:  208 RLLVEYRDREHLLESIVSNLQPAGFFVATPFAAEVGVTFSMRVSLEEEGEVADVPVVVATSISQGAHTLSTMSMGMSVKILKPTPAQGAGISKLFASQLDEKLGLNG 528
            R ++ Y   + L+ +IV+N+QPAGFFV TPFAA VG    +R++LE EGE AD P  V  SI Q AHTLST SMGMSVKI KPTPAQGAGIS++F +  DEKLGL G
Sbjct:    3 RRVITYPSPDDLIGAIVTNIQPAGFFVPTPFAAGVGTKLLIRITLELEGEAADPPATVVASIIQDAHTLSTKSMGMSVKIQKPTPAQGAGISEIFDATPDEKLGLGG 109
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BLAST of mRNA_D-mesarthrocarpus_Contig9425.3.1 vs. uniprot
Match: A0A7C7U8V2_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7U8V2_9DELT)

HSP 1 Score: 113 bits (282), Expect = 2.130e-28
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 1 
Query:   40 MREFGSLERKRLGAGVTPLEYQRWLDLKGQIGHSFAKSRRAGLQAMGGSEGKERP--TRLLVEYRDREHLLESIVSNLQPAGFFVATPFAAEVGVTFSMRVSLEEEGEVADVP 372
            MREFG L RKR+G GVTPL+YQR+LDL+ ++G  F  S +  ++  GG+   + P  TRL+V Y +R  L+ SI+ N++PAGF V TPFAAE+G  F ++VSL++EGE AD P
Sbjct:    1 MREFGDLARKRVGVGVTPLQYQRYLDLRSRMGRRF--SDKGEIREQGGNRRAKPPSVTRLVVPYINRAALISSIIENIKPAGFLVNTPFAAEIGTRFLVKVSLDQEGESADFP 111
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9425.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D6MVQ6_9DELT4.380e-7165.91Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2E5YHE8_9DELT3.500e-3561.68Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7C7U8V2_9DELT2.130e-2852.21Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9425contigD-mesarthrocarpus_Contig9425:2779..3309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categoryother localisation
Exons1
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791096.7490864-CDS-D-mesarthrocarpus_Contig9425:2778..33091680791096.7490864-CDS-D-mesarthrocarpus_Contig9425:2778..3309Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9425 2779..3309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9425.3.1prot_D-mesarthrocarpus_Contig9425.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9425 2779..3309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9425.3.1

>prot_D-mesarthrocarpus_Contig9425.3.1 ID=prot_D-mesarthrocarpus_Contig9425.3.1|Name=mRNA_D-mesarthrocarpus_Contig9425.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=177bp
MRDRTRVQKLMPLMREFGSLERKRLGAGVTPLEYQRWLDLKGQIGHSFAK
SRRAGLQAMGGSEGKERPTRLLVEYRDREHLLESIVSNLQPAGFFVATPF
AAEVGVTFSMRVSLEEEGEVADVPVVVATSISQGAHTLSTMSMGMSVKIL
KPTPAQGAGISKLFASQLDEKLGLNG*
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mRNA from alignment at D-mesarthrocarpus_Contig9425:2779..3309-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9425.3.1 ID=mRNA_D-mesarthrocarpus_Contig9425.3.1|Name=mRNA_D-mesarthrocarpus_Contig9425.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=531bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9425:2779..3309- (Discosporangium mesarthrocarpum MT17_79)
ATGCGGGACCGGACCAGAGTGCAGAAACTGATGCCGCTCATGCGGGAATT
CGGAAGTCTCGAGCGCAAACGCCTCGGTGCGGGGGTGACGCCCCTGGAGT
ACCAGCGCTGGCTGGATCTCAAGGGTCAGATCGGGCATTCCTTCGCGAAG
TCCCGCCGGGCCGGCCTCCAGGCGATGGGGGGCAGCGAAGGGAAGGAGCG
CCCGACGCGCTTGCTCGTCGAATATCGCGACCGCGAGCACCTGCTCGAAT
CGATCGTCTCGAACCTCCAGCCCGCGGGCTTCTTCGTGGCGACCCCCTTC
GCGGCCGAGGTCGGTGTGACGTTCTCGATGCGCGTCTCCCTCGAAGAGGA
GGGGGAAGTCGCGGACGTCCCCGTGGTCGTGGCCACCTCGATCAGCCAGG
GCGCACACACGCTCTCGACCATGAGTATGGGGATGAGCGTGAAGATCCTG
AAGCCCACACCGGCGCAGGGCGCGGGAATCTCGAAGCTCTTCGCTTCGCA
GCTCGACGAGAAGCTCGGGCTGAACGGGTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9425:2779..3309-

>mRNA_D-mesarthrocarpus_Contig9425.3.1 ID=mRNA_D-mesarthrocarpus_Contig9425.3.1|Name=mRNA_D-mesarthrocarpus_Contig9425.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=531bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9425:2779..3309- (Discosporangium mesarthrocarpum MT17_79)
ATGCGGGACCGGACCAGAGTGCAGAAACTGATGCCGCTCATGCGGGAATT
CGGAAGTCTCGAGCGCAAACGCCTCGGTGCGGGGGTGACGCCCCTGGAGT
ACCAGCGCTGGCTGGATCTCAAGGGTCAGATCGGGCATTCCTTCGCGAAG
TCCCGCCGGGCCGGCCTCCAGGCGATGGGGGGCAGCGAAGGGAAGGAGCG
CCCGACGCGCTTGCTCGTCGAATATCGCGACCGCGAGCACCTGCTCGAAT
CGATCGTCTCGAACCTCCAGCCCGCGGGCTTCTTCGTGGCGACCCCCTTC
GCGGCCGAGGTCGGTGTGACGTTCTCGATGCGCGTCTCCCTCGAAGAGGA
GGGGGAAGTCGCGGACGTCCCCGTGGTCGTGGCCACCTCGATCAGCCAGG
GCGCACACACGCTCTCGACCATGAGTATGGGGATGAGCGTGAAGATCCTG
AAGCCCACACCGGCGCAGGGCGCGGGAATCTCGAAGCTCTTCGCTTCGCA
GCTCGACGAGAAGCTCGGGCTGAACGGGTAG
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