mRNA_D-mesarthrocarpus_Contig9423.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9423.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9423.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: D7FZG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG1_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 7.750e-28
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 3 
Query:   48 MSTATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVPGGKLPVENLAQAG 254
            MS ATTFWRLAGMTYLEYAS+AT+V+R ALKEPARS ALAREAV YNRN+F GG P GKLPV +L +AG
Sbjct:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVASLKEAG 69
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: A0A835YQS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.720e-18
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:   57 ATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVPGGKLPVENLAQAG 254
            ATTFWR+AG++YLEYA+  T+ +R  LKEP RS+A+ R AV+YNR +F  GV G K PV++LA AG
Sbjct:    6 ATTFWRIAGLSYLEYAAATTTALRMGLKEPMRSKAMTRNAVSYNRAVFKDGVSGAKKPVKSLADAG 71
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: A0A1Z5K8B7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B7_FISSO)

HSP 1 Score: 75.5 bits (184), Expect = 1.950e-15
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 3 
Query:   60 TTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVPGGKLPVENLAQAG 254
            TTFWR+AGM+YL+Y ++A   +RS LKEPA+++A+A+EA  YN  ++  G  G KLPV N+ QAG
Sbjct:    7 TTFWRVAGMSYLQYINKAAGTMRSVLKEPAKTRAMAQEAYGYNAAVWEAGKQGPKLPVANIQQAG 71
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: A0A448YV42_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV42_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.890e-13
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3 
Query:   57 ATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVPGGKLPVENLAQAG 254
            +TT+WR+AGMTYL+Y +RA   VRS LKEP +S+ LA+    YN + +  G+ G K  +  L QAG
Sbjct:    5 STTYWRIAGMTYLQYVNRAAGAVRSGLKEPTKSKLLAQSEFKYNASAWESGIQGAKKEISALGQAG 70
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: B7G8W9_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8W9_PHATC)

HSP 1 Score: 66.2 bits (160), Expect = 3.310e-11
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   51 STATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVPGGKLPVENLAQAG 254
            S  TTFWR+AGM+YL+Y ++A + +R ALKEPA+ +A+ +EA  Y  + +  G    K+PV+ LAQ+G
Sbjct:   60 SPVTTFWRMAGMSYLQYVNKAATSMRGALKEPAQRKAMEQEAFAYKVSTWQDGKQSPKVPVDVLAQSG 127
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: A0A7S3L8J2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8J2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.400e-10
Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 3 
Query:   30 SPTYTDMST-ATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVPGGKLPVENL 242
            +P +  MS   TTFWR+AG++YL+Y ++A S +R ALKEPA+S+   ++  ++ ++ ++GGV G K  V  +
Sbjct:   39 NPLFIIMSKPVTTFWRMAGLSYLQYVNKAASTIRGALKEPAKSRLAVQDTFSFKKSSWSGGVQGPKTEVTRM 110
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: A0A1E7ER17_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER17_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.750e-10
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 3 
Query:   57 ATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVPGGKLPVENLAQAG 254
            AT FWR+AGM+YL+Y +RA   VRSALKEP +S+  A+   +Y  + +  G    K  + +L+QAG
Sbjct:    5 ATNFWRIAGMSYLQYVNRAAGSVRSALKEPMKSKLSAQGEFSYKASAWVDGTQMSKTEITSLSQAG 70
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: W7U8A3_9STRA (Atp synthase subunit epsilon n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8A3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.960e-9
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 3 
Query:   57 ATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTG---GVPGGKLPVE 236
            ATT+WR+AG+TYL+Y S+A  V+R+ALKEP R++ +A+E + + R  ++    G P G L VE
Sbjct:    5 ATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVE 67
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: A0A5B8MPH6_9CHLO (Subunit epsilon of mitochondrial F1 F0 ATP synthase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MPH6_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 2.320e-8
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:   57 ATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVPGGKLPVENLAQAGGPK 263
            A+ +WR+AGM+YL+YA+    +VR+ALKEP +S AL RE + Y    +T G PG  +  +      G K
Sbjct:    6 ASAYWRVAGMSYLKYANLCADMVRAALKEPMKSNALKRETIFYRGTRWTEGKPGESVLTDFTEAVAGKK 74
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BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Match: A0A0J8CI46_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8CI46_BETVV)

HSP 1 Score: 56.6 bits (135), Expect = 4.180e-8
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 3 
Query:   51 STATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNIFTGGVP 215
            S A  FWR AGMTY+ Y++   ++VR+ LKEP +S+ALARE V Y+ + F  G P
Sbjct:    4 SAAVPFWRAAGMTYISYSNICANLVRNCLKEPFKSEALAREKVHYSISKFENGKP 58
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9423.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZG1_ECTSI7.750e-2878.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQS1_9STRA2.720e-1859.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5K8B7_FISSO1.950e-1553.85Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448YV42_9STRA4.890e-1348.48Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B7G8W9_PHATC3.310e-1147.06Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A7S3L8J2_9STRA6.400e-1040.28Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7ER17_9STRA9.750e-1045.45Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
W7U8A3_9STRA3.960e-947.62Atp synthase subunit epsilon n=2 Tax=Monodopsidace... [more]
A0A5B8MPH6_9CHLO2.320e-842.03Subunit epsilon of mitochondrial F1 F0 ATP synthas... [more]
A0A0J8CI46_BETVV4.180e-850.91Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9423contigD-mesarthrocarpus_Contig9423:237..2425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog161934.XP_010677215.1
PFAMsATP-synt_Eps
Model size427
Max annot lvl35493|Streptophyta
KEGG koko:K02135
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0098796,GO:0098798,GO:0098800
Exons3
Evalue1.21e-09
EggNOG OGsKOG3495@1|root,KOG3495@2759|Eukaryota,37W9H@33090|Viridiplantae,3GK5A@35493|Streptophyta
Ec32 ortholog descriptionATPase, F1 complex, epsilon subunit, mitochondrial
Ec32 orthologEc-19_003180.1
DescriptionATP synthase subunit epsilon
Cds size225
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791096.567465-UTR-D-mesarthrocarpus_Contig9423:236..3911680791096.567465-UTR-D-mesarthrocarpus_Contig9423:236..391Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9423 237..391 -
1680791096.6234746-UTR-D-mesarthrocarpus_Contig9423:2378..24251680791096.6234746-UTR-D-mesarthrocarpus_Contig9423:2378..2425Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9423 2379..2425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791096.5814354-CDS-D-mesarthrocarpus_Contig9423:391..4381680791096.5814354-CDS-D-mesarthrocarpus_Contig9423:391..438Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9423 392..438 -
1680791096.5994391-CDS-D-mesarthrocarpus_Contig9423:1110..12371680791096.5994391-CDS-D-mesarthrocarpus_Contig9423:1110..1237Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9423 1111..1237 -
1680791096.610656-CDS-D-mesarthrocarpus_Contig9423:2327..23781680791096.610656-CDS-D-mesarthrocarpus_Contig9423:2327..2378Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9423 2328..2378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9423.1.1prot_D-mesarthrocarpus_Contig9423.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9423 392..2378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9423.1.1

>prot_D-mesarthrocarpus_Contig9423.1.1 ID=prot_D-mesarthrocarpus_Contig9423.1.1|Name=mRNA_D-mesarthrocarpus_Contig9423.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=75bp
MSTATTFWRLAGMTYLEYASRATSVVRSALKEPARSQALAREAVTYNRNI
FTGGVPGGKLPVENLAQAGGPKVA*
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mRNA from alignment at D-mesarthrocarpus_Contig9423:237..2425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9423.1.1 ID=mRNA_D-mesarthrocarpus_Contig9423.1.1|Name=mRNA_D-mesarthrocarpus_Contig9423.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2189bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9423:237..2425- (Discosporangium mesarthrocarpum MT17_79)
AAAACAGGCTGCCCAGACGTTGATTACGCTCCCCTACTTATACAGACATG
TCTACGGCTACAACCTTCTGGCGACTGGCAGGCATGACGTACCTTGAGGT
GGGGTTTGCGCTGAGGCGGCGAGGAGTGCTGAGGGTTGGGAGGGGAGCGA
GGATTTGCGAGGAGACAGTGGGGCTTGCTCGTTTTGCCCAGCTGTGGGCG
CATGATTAGCAAATAATCCGGCGGGTTGTCTAGAAAATTTGTGCAATCGG
CGCAGTGATGTTGCGGTGAATGCACTTGGTGGGGAACCAGTGAAACACAA
TGGGCGCGAGCGCGGTCTTAACGTGGCGGAACTCTTTGTGGAATGGGGGG
GAGAGGGTGCGTCTCCCTAGCCTTTGGGGGGATTCCCCCCTGTGAGTAGA
TTAGCATTCCTTGCAAGCATTAAGCAGAGCAAAACCACATCCTGCAATCT
GCTTGGACATGCAGGGTTGCCTTCGGCACGTTGAACGTACCATACATAGA
GGGAGCGAGCGGTTCACGGGTTGACATCATACACTGCCAGAATCTCCTCG
AACAAAAACTGTACTTGCCTTATTATCTGCCTCCTGACAACAGCCCCACC
TTGCTATATGTTGTGCGGGTTTTGGGGGCGAGCAATCTTGTTTTCTGGCG
TGTCGCGTTGAAGAACATGAGGACTGAGCAGTGAGCAATTCTGTTTTGGG
AGAAGCCCCCATGACCTCCATGAGTGTGCAAGCATCTTCGCGATCTGACT
CCATGTTACTGTTGCACACCACCGCACATGTAATTCTAGGGCTGGGGTGG
GGTTCCTTTTATTCACAGGGTCACTTCCGCGGTGTCAGATCGGCTATGCA
TCAGTCCATAAGTGATACCACCAACTTCCCTGTTCAATCGTTTCCACAGA
TGACCCTGGGTCACTTTCTCCCCCTGACTTTTTTTCAGGCTAAGTTGCAT
GCTTTTTCCCCCTCCAAACTGTAACAGGGAGTCGCTCCATAATTTTTTCA
GTCCGTTTACCGCAAACAAACGCGCCCTTGTCTAGAGCACGAGATACCCC
TTGTGGCACCCACACTCTTGATATATGTGCCCCAAAATGTATCACCCCCC
CCCCCTGCCTCAACCTACTTACCTCCCCCCCCCCCATGACCTTCAATAAC
CTCTAACGCTAACCCTCACCCAACCTGACGGACCACAGTACGCCAGCCGT
GCCACCTCGGTCGTACGTAGCGCCCTGAAGGAGCCTGCCCGCTCCCAGGC
CCTGGCCCGGGAAGCCGTGACCTACAATCGGAACATATTCACTGGGGGTG
TTCCCGGGGGCAAGCGTGAGTAGGTGTTAAAGCAATTAACCCATAATACC
AGCCCTTGACCCTTGATGACAAGGGGACCATATTTGTCGGGGGTGTTCCA
GGTGTCAGGGCATGAGTGCTTCTTATTATGCCTGATCCTGTTCCTTGAAA
CACGTGTATAGACCTTTAGCAATAACCCTTAATTCTAGATTTCCCCAGGC
ACTGTATGGGTTTGGGTCCAGGCAGAGCCCCTGCCGCGGTGTTGCATTCG
CCTGCCCTGTGTTGACTTACGCTTTGGACATAGGTCCTGGCCTGAGGGTA
TGACGTTGCAGGTGCTGTTGGTTCGCACTTAATCATTGAGGGAAAGTCTC
CTGGAAGTTTCGGAGTACCTGTAAAAATGGTCTTTTTTTATTCACCCGTG
CTCTCTCATGCCAGGGGAAGGTTTGGGCAATTTTTCTTGCTATCTGACAT
GAGATGATGGTCTGTGGACTGAGATGTGTCGCCGATGAGGACCACTGCAC
AGTACAGTACTACAAATTTTATAGACATAGGAGATTGAATAATTTTAGGG
TTAGGGTTAGAGTTAGAGGTTCTGTGATGTCGGCATCAGTTTCCAATCCT
TGTATCACCTAATTCAGCAAAGCTACTCCCCCCCCCCCCCCACACCTTAT
TTCCAAATCACCTCTGGCTGGTCTTTTCCATTGCCAGTGCCTGTGGAGAA
CCTTGCGCAGGCTGGGGGGCCCAAGGTCGCGTAACCTTAACCCTAACCGG
GAAGACCACAGTGGTCTCAGGACGGTTCAAGGAAGGGGTTAAATGAGAGG
TTAGGTCTAGCGCTGCTAAACGGGGTGATGTGTACCCAATTTGACTTTTT
GCCAACGGGTGAAGCCAAGGGGTGAAGCGTGGGAGGGGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9423:237..2425-

>mRNA_D-mesarthrocarpus_Contig9423.1.1 ID=mRNA_D-mesarthrocarpus_Contig9423.1.1|Name=mRNA_D-mesarthrocarpus_Contig9423.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=225bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9423:237..2425- (Discosporangium mesarthrocarpum MT17_79)
ATGTCTACGGCTACAACCTTCTGGCGACTGGCAGGCATGACGTACCTTGA
GTACGCCAGCCGTGCCACCTCGGTCGTACGTAGCGCCCTGAAGGAGCCTG
CCCGCTCCCAGGCCCTGGCCCGGGAAGCCGTGACCTACAATCGGAACATA
TTCACTGGGGGTGTTCCCGGGGGCAAGCTGCCTGTGGAGAACCTTGCGCA
GGCTGGGGGGCCCAAGGTCGCGTAA
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