mRNA_D-mesarthrocarpus_Contig9422.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9422.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9422.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9422.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9422contigD-mesarthrocarpus_Contig9422:2823..4472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1029
Hectar predicted targeting categoryother localisation
Exons2
Cds size765
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791096.4460616-UTR-D-mesarthrocarpus_Contig9422:2822..30851680791096.4460616-UTR-D-mesarthrocarpus_Contig9422:2822..3085Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9422 2823..3085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791096.4582117-CDS-D-mesarthrocarpus_Contig9422:3085..33601680791096.4582117-CDS-D-mesarthrocarpus_Contig9422:3085..3360Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9422 3086..3360 +
1680791096.4769795-CDS-D-mesarthrocarpus_Contig9422:3982..44721680791096.4769795-CDS-D-mesarthrocarpus_Contig9422:3982..4472Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9422 3983..4472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9422.2.1prot_D-mesarthrocarpus_Contig9422.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9422 3086..4472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9422.2.1

>prot_D-mesarthrocarpus_Contig9422.2.1 ID=prot_D-mesarthrocarpus_Contig9422.2.1|Name=mRNA_D-mesarthrocarpus_Contig9422.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=255bp
MIGPLHISSCSPCRRCRQLGGLRRRQGRSTWKMEKGSGTPHRNGRDAGGK
DAAENCEPIGLEVGASSKRRSTRVRLGAMLRKSRSALHTSRRSKKREKKG
SGGGDGVTWGRVVDSDQSDGELGVCSGPDAVDSERGNREEISLSLDPKGS
ASLAMHFLMKPDDEEDNDLGGHAGMAGAGARVGRGAAVTAMEKKPAVAMR
AAAATGAEVVTGAAATTGVRPREGGEEEGGNKKCGRVAATVGYNARGRGR
AVSIG
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mRNA from alignment at D-mesarthrocarpus_Contig9422:2823..4472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9422.2.1 ID=mRNA_D-mesarthrocarpus_Contig9422.2.1|Name=mRNA_D-mesarthrocarpus_Contig9422.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1650bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9422:2823..4472+ (Discosporangium mesarthrocarpum MT17_79)
GGGAGCTTCCGATGCGCCCATCTCTCAGGACCCAGCTCGGCTCTTGGAGG
GCTACGACACGGAGCCTGAGATAGGGAATCCGAGGTTGTCATGTATTCCC
TTGCTGTACTAGCTTTACTTGCTGCACTGGCTTCCCTTCCTGCACTGACT
TGTAGCATCGAGTTGTTCATGACGCCTAATTCCAAGGGTAGCAATGAGAA
TTAGGAATAATTCATGCATTACCTGCCGACGGGCCACACGAATTGCGTTT
GGGAAACTATCACATGATTGGCCCGCTCCATATATCCTCCTGCTCCCCGT
GTAGACGTTGTCGTCAACTCGGAGGATTGCGCCGGCGTCAAGGCAGATCC
ACATGGAAAATGGAAAAGGGATCGGGGACTCCCCATCGTAATGGGCGAGA
TGCGGGAGGCAAGGATGCTGCCGAAAACTGTGAGCCGATAGGGCTGGAGG
TTGGGGCGTCGTCGAAACGAAGGTCGACTCGGGTCAGGCTAGGGGCAATG
CTGCGGAAGTCGAGGTCAGCCCTTCACACCAGCCGCAGGTAGGTCTTGGG
TGTGAGAAACCTCACCGAAATGCAGATTTTCAGACCGCCATTACTCGTGG
TTTTTTCATCAACAAAATAGTGGACTCAAGGCGGGGATAAGATGTGACTG
GAGCATTTCAGGTTGACTTTCATCCACTCTATAGTCTTAGTCATCAAGCG
CCCTACGGCTTTCTGGAGGCCGGTCTCTGCTGCTTTAACTTGCATTCCAC
CGTAGCTGAATGTCCATTGCCTTTGTGTTCTCGTTTTTGGCACGTTCGGC
ACGTGCTGCATTAATTGATGAGGTTCCTGCATGGCGTGTGTGTCCACCTT
CCTGACAAAAAAATAGTTTTTTTTTTATCAGCTCATAATTGCAAGCCTCT
TCTCCCAGGTCCCCCTCTCTCTCTTCATTTTTTCCCTCATTGTCCGTTGT
TGTCTGCTCGATTGTGTTTTGTTCTTAACAGTGGGCCCCAGGTAGGTCCG
ACAAAACACCGAACCGAGGGACAACCAAGTACCTGAGTACACACACACAT
CACCCTCACCCCAACCTCATATTTTTACCCAGTGCAAACCTCAACCCCTC
ACACCACTTTATCCTGTCCGCGACAAACTAATATTATTTGCTACATACAT
ACCTGAAAAGGTCCAAGAAGAGAGAGAAGAAAGGCTCTGGGGGCGGTGAC
GGGGTTACCTGGGGCAGGGTGGTGGACTCCGACCAATCAGATGGGGAACT
CGGTGTGTGCTCTGGGCCGGATGCTGTGGACTCTGAGCGGGGAAACCGTG
AGGAGATCTCCTTGAGCCTTGACCCCAAGGGAAGTGCCTCACTTGCCATG
CACTTCCTAATGAAACCTGATGATGAAGAGGATAATGACTTGGGTGGCCA
TGCCGGGATGGCCGGGGCTGGGGCCAGGGTAGGGCGTGGGGCAGCAGTTA
CCGCCATGGAGAAGAAGCCAGCAGTGGCTATGAGGGCTGCAGCGGCCACT
GGGGCTGAAGTGGTCACGGGGGCTGCAGCGACCACGGGGGTCAGGCCCAG
AGAGGGCGGGGAAGAGGAGGGGGGGAACAAGAAATGTGGGAGGGTTGCTG
CAACTGTGGGGTACAATGCCCGTGGACGGGGAAGGGCAGTGTCCATTGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9422:2823..4472+

>mRNA_D-mesarthrocarpus_Contig9422.2.1 ID=mRNA_D-mesarthrocarpus_Contig9422.2.1|Name=mRNA_D-mesarthrocarpus_Contig9422.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=765bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9422:2823..4472+ (Discosporangium mesarthrocarpum MT17_79)
ATGATTGGCCCGCTCCATATATCCTCCTGCTCCCCGTGTAGACGTTGTCG
TCAACTCGGAGGATTGCGCCGGCGTCAAGGCAGATCCACATGGAAAATGG
AAAAGGGATCGGGGACTCCCCATCGTAATGGGCGAGATGCGGGAGGCAAG
GATGCTGCCGAAAACTGTGAGCCGATAGGGCTGGAGGTTGGGGCGTCGTC
GAAACGAAGGTCGACTCGGGTCAGGCTAGGGGCAATGCTGCGGAAGTCGA
GGTCAGCCCTTCACACCAGCCGCAGGTCCAAGAAGAGAGAGAAGAAAGGC
TCTGGGGGCGGTGACGGGGTTACCTGGGGCAGGGTGGTGGACTCCGACCA
ATCAGATGGGGAACTCGGTGTGTGCTCTGGGCCGGATGCTGTGGACTCTG
AGCGGGGAAACCGTGAGGAGATCTCCTTGAGCCTTGACCCCAAGGGAAGT
GCCTCACTTGCCATGCACTTCCTAATGAAACCTGATGATGAAGAGGATAA
TGACTTGGGTGGCCATGCCGGGATGGCCGGGGCTGGGGCCAGGGTAGGGC
GTGGGGCAGCAGTTACCGCCATGGAGAAGAAGCCAGCAGTGGCTATGAGG
GCTGCAGCGGCCACTGGGGCTGAAGTGGTCACGGGGGCTGCAGCGACCAC
GGGGGTCAGGCCCAGAGAGGGCGGGGAAGAGGAGGGGGGGAACAAGAAAT
GTGGGAGGGTTGCTGCAACTGTGGGGTACAATGCCCGTGGACGGGGAAGG
GCAGTGTCCATTGGC
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