mRNA_D-mesarthrocarpus_Contig9412.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9412.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9412.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9412.1.1 vs. uniprot
Match: A0A6H5JJC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC9_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.230e-23
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 3 
Query:  291 VNAQTGTSGWLLRATTHQRYLGYDVPLDLLPLTSTHNSFTCDQDPRTHSNFEVVTAQIHSMTTQLSCLGVRGLELDPH 524
            V  QT TS WL RA   QRY+GYD+PL  + LT+THNSF+ D++  TH+NFEVVTAQ++SMT QLSCLGVRGLE+D H
Sbjct:   50 VYGQTETSDWLHRAAALQRYIGYDIPLSSITLTATHNSFSHDRNISTHANFEVVTAQVYSMTDQLSCLGVRGLEIDLH 127
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BLAST of mRNA_D-mesarthrocarpus_Contig9412.1.1 vs. uniprot
Match: D7FR16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR16_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 7.560e-17
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 3 
Query:  327 RATTHQRYL-GYDVPLDLLPLTSTHNSFTCDQDPRTHSNFEVVTAQIHSMTTQLSCLGVRGLELDPH 524
            +A+TH+ +  GYD+PL    LT+THNSF+ D++  TH+NFEVVTAQ++SMT QLSCLGVRGLE+D H
Sbjct:    4 KASTHRPWSPGYDIPLSSKTLTATHNSFSHDRNISTHANFEVVTAQVYSMTDQLSCLGVRGLEIDLH 70
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9412.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJC9_9PHAE3.230e-2365.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR16_ECTSI7.560e-1762.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9412contigD-mesarthrocarpus_Contig9412:2016..3866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FR16
Model size533
Max annot lvl2880.D7FR16|-
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.33e-18
EggNOG OGs2E6BS@1|root,2SD24@2759|Eukaryota
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791095.7477372-UTR-D-mesarthrocarpus_Contig9412:2015..22211680791095.7477372-UTR-D-mesarthrocarpus_Contig9412:2015..2221Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9412 2016..2221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791095.7579372-CDS-D-mesarthrocarpus_Contig9412:2221..23701680791095.7579372-CDS-D-mesarthrocarpus_Contig9412:2221..2370Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9412 2222..2370 +
1680791095.7690847-CDS-D-mesarthrocarpus_Contig9412:3338..34291680791095.7690847-CDS-D-mesarthrocarpus_Contig9412:3338..3429Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9412 3339..3429 +
1680791095.778591-CDS-D-mesarthrocarpus_Contig9412:3779..38661680791095.778591-CDS-D-mesarthrocarpus_Contig9412:3779..3866Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9412 3780..3866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9412.1.1prot_D-mesarthrocarpus_Contig9412.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9412 2222..3866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9412.1.1

>prot_D-mesarthrocarpus_Contig9412.1.1 ID=prot_D-mesarthrocarpus_Contig9412.1.1|Name=mRNA_D-mesarthrocarpus_Contig9412.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=109bp
MRPSRQTGGLLAAPVALGLTTTLLRTWMVNAQTGTSGWLLRATTHQRYLG
YDVPLDLLPLTSTHNSFTCDQDPRTHSNFEVVTAQIHSMTTQLSCLGVRG
LELDPHLSE
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mRNA from alignment at D-mesarthrocarpus_Contig9412:2016..3866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9412.1.1 ID=mRNA_D-mesarthrocarpus_Contig9412.1.1|Name=mRNA_D-mesarthrocarpus_Contig9412.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1851bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9412:2016..3866+ (Discosporangium mesarthrocarpum MT17_79)
CAACAGACTTAAAGACGACCTCCCAGCGGGTATGGGTCGTCAAACCTCTT
TTTGACCTTGCCTGTGGATGGTATCATTAATACGGTAATAACAGGCCTCA
ACGTATGGGATAGGTGATCAACCGCAGAAGTCCCTTCAGAAAAGAAAACC
AAACCTCCGTCCTCTCTGCATCTTTCCTGTCTCGTCTCCAGCTTGGACCA
AGGATTATGCGTCCTTCGCGTCAGACCGGGGGGTTGCTGGCGGCTCCTGT
AGCGTTGGGGCTTACCACGACTCTCCTTCGCACATGGATGGTCAATGCTC
AGACGGGTACGTCTGGGTGGCTCCTGCGCGCCACGACCCACCAGCGTTAC
CTTGGGTGAGTGCGAGAGATCAGCTGAGATCCCTCATTCTCAATCAGTTT
CCAACATATAGGCATACCCATCAGCGACTGGGATGGCTTATCACGACGTA
CATTGCCGGTGGTTTCGCGAGCTTACTGCCGACAGTCTTTGGGCATATAT
TGCATATCGAGGGCCCATCATTCTCTCGTTGACCATGATTGTGGCCCTCG
TCTCCTGGTGAACGCTGCCGTGAACCAGAACCTTTTGCATATAGGAGGCC
GAGACTCGGTGATGGTGCTTGGTTTTTGCATCGAAGTATCCGCACCGCTG
TTGCGGTAACCCGTCGGGTGTTCGTGAAACACTCATGCGAAACTTAGCAT
CTTTCCCCACTAGAGATCCTATTGGCGGGCATCGAGAGAGGACATCATGG
GCACCTGTACCCGCAATAGATTATCGCAAGTCCACACCCGTACCGCCTAA
GCTCAGATACCCGTTGGCAACTTTGCTCGAAGAACAAGCGGTTCCACCAC
CCACGTCGCCACAGCACAAGATTCACGATATCCAGCAGGAGCATGGGAGA
AGGGAGGGTTGAGGGAGGGTTGCCTAGGATTGATAGGTGCAGCTATCTTG
CTTCGGATGTAGGGGCTTGACCGACTGTGGTGTTAGGCAAACACCCTGTG
AATTGCTTGTGTCTACTTTTCACGATTGCGAAGTGGCAAGTGCCTCGAAG
GATCCACAATTGGTATTCCTTTTTTCTATTGTGCTCTCTTGGACAATTCT
GTTGGATCGTCGTGATGCTTTGAATGCAAATAAATGCAACCAGCACTGCC
CAGGCATACCCCGCAGGGTCGATGGGTTTGCTCGTTCTTGCTTTACTATC
ATCGCGTCAATTCTTCTTCTTCCCCTTCTCCTTTCTCTTCCTCAAAATTA
CCGATCCCGTCCCCCTGCCACCCACCATATACATGTGCCCTCTTGCTTGT
TCGTTGCCTCTTCACTTGGGAAGATACGACGTGCCGCTGGACCTGTTGCC
GTTAACGTCAACCCACAACAGCTTCACGTGCGACCAGGACCCCCGCACTC
ATAGTAACTTCGAGGCAAGCGCAGCTGAGGGTCATGGCTTGAAGGAGAAG
GGAAGGGCAGCCTGATATCCTTTTCTTGTTGTAGTTATATGGCTGCTGCG
GACTGGGAGGCAGTCATCGATGAAGGCGATGGGGGGGGGGGCAGAGGGTG
GGTGGGGGTAGGTGTAGCTTAAACTGTGACTGAGTGGTCTTGAGCATGTA
TGTAGGCAGAATGTTTTATGTTGTGATAACTTTCCCCCTTCCCTGTTTAC
CCTGAACCCAATGACCCAAACACTGACTGGGTCACTCTTATGCCCTGCCG
TGTTTTCTTGCCTGCCATTGCTGCCCCGGCTCCCGACGTTTTTTTTTTGC
TTGTCTGGGCACAGGTGGTGACGGCGCAGATTCACTCGATGACAACTCAG
CTCAGCTGCCTTGGTGTGCGTGGACTTGAGCTGGATCCCCACTTAAGCGA
G
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9412:2016..3866+

>mRNA_D-mesarthrocarpus_Contig9412.1.1 ID=mRNA_D-mesarthrocarpus_Contig9412.1.1|Name=mRNA_D-mesarthrocarpus_Contig9412.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=327bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9412:2016..3866+ (Discosporangium mesarthrocarpum MT17_79)
ATGCGTCCTTCGCGTCAGACCGGGGGGTTGCTGGCGGCTCCTGTAGCGTT
GGGGCTTACCACGACTCTCCTTCGCACATGGATGGTCAATGCTCAGACGG
GTACGTCTGGGTGGCTCCTGCGCGCCACGACCCACCAGCGTTACCTTGGA
TACGACGTGCCGCTGGACCTGTTGCCGTTAACGTCAACCCACAACAGCTT
CACGTGCGACCAGGACCCCCGCACTCATAGTAACTTCGAGGTGGTGACGG
CGCAGATTCACTCGATGACAACTCAGCTCAGCTGCCTTGGTGTGCGTGGA
CTTGAGCTGGATCCCCACTTAAGCGAG
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