mRNA_D-mesarthrocarpus_Contig9411.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9411.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9411.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: A0A2E3NH59_9DELT (Transcriptional regulator n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E3NH59_9DELT)

HSP 1 Score: 206 bits (523), Expect = 6.130e-67
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVV+DDDK + VIEAIV AANTGKIGDGKIFV+PL+EA+RIRTGERG AAV
Sbjct:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVVDDDKVEGVIEAIVGAANTGKIGDGKIFVLPLDEAIRIRTGERGPAAV 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: A0A2E5YGY9_9DELT (Transcriptional regulator n=4 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2E5YGY9_9DELT)

HSP 1 Score: 194 bits (494), Expect = 1.620e-62
Identity = 97/112 (86.61%), Postives = 104/112 (92.86%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MKK+EAIIKPFKLDDVKEAL G+GVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVV+  D  D V+EAIV AANTGKIGDGKIF++PLEEAVRIRTGERG +AV
Sbjct:    1 MKKVEAIIKPFKLDDVKEALAGIGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVVAADVVDKVVEAIVGAANTGKIGDGKIFILPLEEAVRIRTGERGGSAV 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: A0A3B1C1A9_9ZZZZ (Nitrogen regulatory protein P-II n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1C1A9_9ZZZZ)

HSP 1 Score: 187 bits (476), Expect = 9.020e-60
Identity = 92/112 (82.14%), Postives = 102/112 (91.07%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MKKIEAIIKPFKLDDVK+AL  +G EGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK++VV+DDDK +AV+E I  AA TGKIGDGKIFV P+EE +RIRTGERGSAA+
Sbjct:    1 MKKIEAIIKPFKLDDVKDALTEVGAEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKIDVVVDDDKVEAVLEKIAEAAGTGKIGDGKIFVTPIEEVIRIRTGERGSAAI 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: A0A7Y3GZB9_9DELT (P-II family nitrogen regulator n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GZB9_9DELT)

HSP 1 Score: 183 bits (464), Expect = 6.100e-58
Identity = 88/112 (78.57%), Postives = 105/112 (93.75%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MK I+AI+KPFKL+DVK AL  +G++G+TV+EVKGFGRQKGHTELYRGAEYVVDFLPKIKLE+V+ DD++DAV++AIV AANTG+IGDGKIFV+PLE+AVRIRTGERGS AV
Sbjct:    1 MKLIQAIVKPFKLEDVKAALQEIGIQGMTVSEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEIVVSDDQSDAVVKAIVGAANTGRIGDGKIFVLPLEDAVRIRTGERGSDAV 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: A0A7C7ZJ25_9DELT (P-II family nitrogen regulator n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7ZJ25_9DELT)

HSP 1 Score: 183 bits (464), Expect = 6.100e-58
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MKK+EAIIKPFKLD+VKEAL  +G++GLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLE+V+ DD  D  +EAIV AANTG+IGDGKIFV+PL E++RIRTGERG  AV
Sbjct:    1 MKKVEAIIKPFKLDEVKEALQQVGIQGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEIVVTDDMVDKAVEAIVEAANTGRIGDGKIFVLPLGESIRIRTGERGEEAV 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: A0A7C2NHY0_9DELT (P-II family nitrogen regulator n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2NHY0_9DELT)

HSP 1 Score: 182 bits (463), Expect = 8.660e-58
Identity = 86/112 (76.79%), Postives = 102/112 (91.07%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            M+KIEAIIKPFKLD+VKEAL G+G++G+TVTEVKGFGRQKGHTELYRGAEYVVDFLPKIK+E+ + DD  D V++AIV AANTG+IGDGKIFVMP++E +RIRTGERG  A+
Sbjct:    1 MRKIEAIIKPFKLDEVKEALHGIGIQGMTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKIEIAVRDDLVDKVVDAIVGAANTGRIGDGKIFVMPMQEVIRIRTGERGPEAL 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: UPI001AC6C7A1 (Nitrogen regulatory protein P-II n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=UPI001AC6C7A1)

HSP 1 Score: 182 bits (462), Expect = 1.230e-57
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MKKIEAIIKPFKLD+VKEAL  +GV+G+TVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEV + D+  D V++AI  AANTG+IGDGKIFV+P+EE VRIRTGERG+ AV
Sbjct:    1 MKKIEAIIKPFKLDEVKEALNQIGVQGMTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVAVSDEMADKVVQAICQAANTGRIGDGKIFVLPMEEVVRIRTGERGADAV 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: A0A3M0WM12_9PROT (Nitrogen regulatory protein P-II n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0WM12_9PROT)

HSP 1 Score: 182 bits (461), Expect = 1.750e-57
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MKKIEAIIKPFKLD+VKEAL  +GVEGL+VTEVKGFGRQKGHTELYRGAEYVVDFLPK+K+EVV+ DD  +  IEAI+AAA TGKIGDGKIFV P+E+AVRIRTGERG  AV
Sbjct:    1 MKKIEAIIKPFKLDEVKEALQEVGVEGLSVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVLPDDMVEPAIEAIIAAARTGKIGDGKIFVTPVEQAVRIRTGERGEDAV 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: S6BAK1_9GAMM (Nitrogen regulatory protein P-II n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju TaxID=1248727 RepID=S6BAK1_9GAMM)

HSP 1 Score: 181 bits (458), Expect = 5.010e-57
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MKKIEAIIKPFKLDDV+EAL  +GV G+TVTE+KGFGRQKGHTELYRGAEYVVDFLPK+KLE+VI +D+ D  +EAI  AA TGKIGDGKIFV+P+EE VRIRTGERG  A+
Sbjct:    1 MKKIEAIIKPFKLDDVREALSNIGVNGMTVTEIKGFGRQKGHTELYRGAEYVVDFLPKLKLEIVIAEDRVDECVEAITQAARTGKIGDGKIFVLPVEEVVRIRTGERGREAI 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Match: A0A2M8DFX8_9BACT (Transcriptional regulator n=2 Tax=Bacteria TaxID=2 RepID=A0A2M8DFX8_9BACT)

HSP 1 Score: 181 bits (458), Expect = 5.010e-57
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAVRIRTGERGSAAV 336
            MKKIEAIIKPFKLD+VKEAL  +GV G+TV+EVKGFGRQKGHTELYRGAEYVVDFLPK+KLEVV+ DD T  V+EAI A+A TGKIGDGKIFV+P+EEA+RIRTGERG  A+
Sbjct:    1 MKKIEAIIKPFKLDEVKEALNKVGVMGITVSEVKGFGRQKGHTELYRGAEYVVDFLPKVKLEVVVPDDLTSQVVEAIEASAKTGKIGDGKIFVLPVEEAIRIRTGERGGDAI 112          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9411.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3NH59_9DELT6.130e-6791.96Transcriptional regulator n=1 Tax=Deltaproteobacte... [more]
A0A2E5YGY9_9DELT1.620e-6286.61Transcriptional regulator n=4 Tax=Deltaproteobacte... [more]
A0A3B1C1A9_9ZZZZ9.020e-6082.14Nitrogen regulatory protein P-II n=1 Tax=hydrother... [more]
A0A7Y3GZB9_9DELT6.100e-5878.57P-II family nitrogen regulator n=1 Tax=Myxococcale... [more]
A0A7C7ZJ25_9DELT6.100e-5879.46P-II family nitrogen regulator n=1 Tax=Myxococcale... [more]
A0A7C2NHY0_9DELT8.660e-5876.79P-II family nitrogen regulator n=2 Tax=Deltaproteo... [more]
UPI001AC6C7A11.230e-5779.46Nitrogen regulatory protein P-II n=1 Tax=Myxococca... [more]
A0A3M0WM12_9PROT1.750e-5781.25Nitrogen regulatory protein P-II n=1 Tax=Alphaprot... [more]
S6BAK1_9GAMM5.010e-5777.68Nitrogen regulatory protein P-II n=1 Tax=endosymbi... [more]
A0A2M8DFX8_9BACT5.010e-5779.46Transcriptional regulator n=2 Tax=Bacteria TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9411contigD-mesarthrocarpus_Contig9411:3050..3388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog644076.SCH4B_4489
Preferred nameglnB
PFAMsP-II
Model size339
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K04751
KEGG Pathwayko02020,map02020
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0006808,GO:0008150,GO:0030234,GO:0050789,GO:0050790,GO:0065007,GO:0065009,GO:0098772
Exons1
Evalue4.07e-58
EggNOG OGsCOG0347@1|root,COG0347@2|Bacteria,1RGWK@1224|Proteobacteria,2U73Z@28211|Alphaproteobacteria,4NC8I@97050|Ruegeria
DescriptionBelongs to the P(II) protein family
Cds size339
COG categoryK
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791095.6672623-CDS-D-mesarthrocarpus_Contig9411:3049..33881680791095.6672623-CDS-D-mesarthrocarpus_Contig9411:3049..3388Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9411 3050..3388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9411.2.1prot_D-mesarthrocarpus_Contig9411.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9411 3050..3388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9411.2.1

>prot_D-mesarthrocarpus_Contig9411.2.1 ID=prot_D-mesarthrocarpus_Contig9411.2.1|Name=mRNA_D-mesarthrocarpus_Contig9411.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=113bp
MKKIEAIIKPFKLDDVKEALGGLGVEGLTVTEVKGFGRQKGHTELYRGAE
YVVDFLPKIKLEVVIDDDKTDAVIEAIVAAANTGKIGDGKIFVMPLEEAV
RIRTGERGSAAV*
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mRNA from alignment at D-mesarthrocarpus_Contig9411:3050..3388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9411.2.1 ID=mRNA_D-mesarthrocarpus_Contig9411.2.1|Name=mRNA_D-mesarthrocarpus_Contig9411.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=339bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9411:3050..3388+ (Discosporangium mesarthrocarpum MT17_79)
ATGAAGAAGATCGAAGCCATCATCAAGCCCTTCAAGCTCGACGACGTGAA GGAGGCCCTCGGCGGCCTCGGCGTCGAGGGACTGACCGTGACCGAAGTCA AGGGCTTCGGCCGACAGAAGGGGCACACCGAGCTCTATCGCGGCGCGGAG TACGTGGTCGATTTCCTGCCCAAGATCAAGCTCGAGGTCGTGATCGACGA CGACAAGACGGACGCCGTGATCGAGGCGATCGTCGCCGCCGCCAACACGG GAAAGATCGGAGACGGCAAGATCTTCGTGATGCCCCTCGAAGAGGCGGTC CGGATCCGGACCGGCGAACGCGGTTCGGCCGCGGTCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9411:3050..3388+

>mRNA_D-mesarthrocarpus_Contig9411.2.1 ID=mRNA_D-mesarthrocarpus_Contig9411.2.1|Name=mRNA_D-mesarthrocarpus_Contig9411.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=339bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9411:3050..3388+ (Discosporangium mesarthrocarpum MT17_79)
ATGAAGAAGATCGAAGCCATCATCAAGCCCTTCAAGCTCGACGACGTGAA
GGAGGCCCTCGGCGGCCTCGGCGTCGAGGGACTGACCGTGACCGAAGTCA
AGGGCTTCGGCCGACAGAAGGGGCACACCGAGCTCTATCGCGGCGCGGAG
TACGTGGTCGATTTCCTGCCCAAGATCAAGCTCGAGGTCGTGATCGACGA
CGACAAGACGGACGCCGTGATCGAGGCGATCGTCGCCGCCGCCAACACGG
GAAAGATCGGAGACGGCAAGATCTTCGTGATGCCCCTCGAAGAGGCGGTC
CGGATCCGGACCGGCGAACGCGGTTCGGCCGCGGTCTAG
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