mRNA_D-mesarthrocarpus_Contig941.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig941.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig941.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig941.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig941contigD-mesarthrocarpus_Contig941:1914..2824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size361
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791095.0183253-UTR-D-mesarthrocarpus_Contig941:1913..20041680791095.0183253-UTR-D-mesarthrocarpus_Contig941:1913..2004Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig941 1914..2004 -
1680791095.0501757-UTR-D-mesarthrocarpus_Contig941:2788..28241680791095.0501757-UTR-D-mesarthrocarpus_Contig941:2788..2824Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig941 2789..2824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791095.0292864-CDS-D-mesarthrocarpus_Contig941:2004..22101680791095.0292864-CDS-D-mesarthrocarpus_Contig941:2004..2210Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig941 2005..2210 -
1680791095.0394032-CDS-D-mesarthrocarpus_Contig941:2760..27881680791095.0394032-CDS-D-mesarthrocarpus_Contig941:2760..2788Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig941 2761..2788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig941.2.1prot_D-mesarthrocarpus_Contig941.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig941 2005..2788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig941.2.1

>prot_D-mesarthrocarpus_Contig941.2.1 ID=prot_D-mesarthrocarpus_Contig941.2.1|Name=mRNA_D-mesarthrocarpus_Contig941.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=78bp
MTLLERQEHGHPGLILGALTVDQRGGGGAGSGRGSVSRGVSWAWGPVLAP
SEERQIGGHEWVRMGTGKGLLAGACTV*
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mRNA from alignment at D-mesarthrocarpus_Contig941:1914..2824-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig941.2.1 ID=mRNA_D-mesarthrocarpus_Contig941.2.1|Name=mRNA_D-mesarthrocarpus_Contig941.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=911bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig941:1914..2824- (Discosporangium mesarthrocarpum MT17_79)
CCTGTATTCCGCACCCCTGAGAAGAAACAAGACACGATGACACTCCTAGA
ACGCCAAGAACACGGTGAGTGCCGGAGTCAGCCGCTCAAGTCCTTCCCCC
CCCGTACGTGTATTCCCCAGCCTCCGCCACCGCTGCAAACATAGCTTTCA
CAGCGACCATTTACCATTGACCAGCAACGTGTGTCCTCCAGGTCTCATAG
TGAAACGACCCTGCACCTGCTTCCGCATCTGCACCCGTATCCGCCTCAAC
CCCCAAGACCTCCTCCTGCCCGATTTTCTGAGGGAGGCCACCACAATCGA
AAGCGGCCATTGCTGGAGAGCTCTCCATGCAATCCCCTCCCAAGACTGCC
CCCCCCTCCCCCTCCTGTCCCTTCTCTTCTTCCGTTTCCACTTCCGGCCC
CGGTCCCTCTCACTGCTGCTGCCCCCGACCTCCCCTTGACGTCTGGCCCA
GCTGCTGCAAGCCCCCGCCTGTTCCCAGGCACGTCTGTGGCCATACCCAG
AACATCATCGTGCTGAGAAGCTTCAGAAGAGGCAGTGGGCTGTGGTCCTC
CCCCCCCCCTCTCCATAACCCCACCCCTGCTTCCCACCGTTGACCCTTGC
TTCATTTGCTCCAGGGCACCCTGGCCTCATACTTGGCGCTCTGACGGTGG
ATCAACGTGGTGGTGGGGGTGCTGGTAGTGGCCGGGGTAGTGTCTCCAGA
GGAGTAAGCTGGGCTTGGGGTCCTGTTCTTGCTCCTTCTGAGGAGAGACA
GATTGGAGGACATGAGTGGGTGAGGATGGGGACAGGCAAGGGCTTGTTAG
CTGGTGCATGCACAGTTTAATTGCATACAGTAGTTAATTGTTTAATTAGT
TAGAAGCAAAAGCATTCATTACTCTTCAAAGTACATCAAAAAGCATACCA
CAGGTCTAGCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig941:1914..2824-

>mRNA_D-mesarthrocarpus_Contig941.2.1 ID=mRNA_D-mesarthrocarpus_Contig941.2.1|Name=mRNA_D-mesarthrocarpus_Contig941.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=234bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig941:1914..2824- (Discosporangium mesarthrocarpum MT17_79)
ATGACACTCCTAGAACGCCAAGAACACGGGCACCCTGGCCTCATACTTGG
CGCTCTGACGGTGGATCAACGTGGTGGTGGGGGTGCTGGTAGTGGCCGGG
GTAGTGTCTCCAGAGGAGTAAGCTGGGCTTGGGGTCCTGTTCTTGCTCCT
TCTGAGGAGAGACAGATTGGAGGACATGAGTGGGTGAGGATGGGGACAGG
CAAGGGCTTGTTAGCTGGTGCATGCACAGTTTAA
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