mRNA_D-mesarthrocarpus_Contig940.8.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig940.8.1
Unique NamemRNA_D-mesarthrocarpus_Contig940.8.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig940.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig940contigD-mesarthrocarpus_Contig940:10825..12066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size837
Hectar predicted targeting categoryother localisation
Exons2
Cds size834
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791094.0807986-CDS-D-mesarthrocarpus_Contig940:10824..112201680791094.0807986-CDS-D-mesarthrocarpus_Contig940:10824..11220Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig940 10825..11220 +
1680791094.09126-CDS-D-mesarthrocarpus_Contig940:11626..120641680791094.09126-CDS-D-mesarthrocarpus_Contig940:11626..12064Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig940 11627..12064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig940.8.1prot_D-mesarthrocarpus_Contig940.8.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig940 10825..12064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig940.8.1

>prot_D-mesarthrocarpus_Contig940.8.1 ID=prot_D-mesarthrocarpus_Contig940.8.1|Name=mRNA_D-mesarthrocarpus_Contig940.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=278bp
GLWVGQVNRGVGEGKELEEHVRVGERRRVDLAPGLFSSGIMESGAISCEE
AALGIGTTEEEGTGRVGDGSDSRMEGRSRTPSISGGNSDAPPGPPMLTRF
EPGGVLTESNMGVNDSDIDTTREQGSRVSSEQEETRRMRFIVRFGQHMGE
GIFDNGVGPDEIVSHIDLSNMGNVSVDSSSDSGTGGNAGIEGVFSDMSLR
RTQLSPEGRPRLVEHAVPLGALEQELSPENSYLSPSEQGLAQGQVSPGWA
PSREGAELVQSGSGIPGAVEEEESKTEA
back to top

mRNA from alignment at D-mesarthrocarpus_Contig940:10825..12066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig940.8.1 ID=mRNA_D-mesarthrocarpus_Contig940.8.1|Name=mRNA_D-mesarthrocarpus_Contig940.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1242bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig940:10825..12066+ (Discosporangium mesarthrocarpum MT17_79)
GGTCTGTGGGTTGGGCAAGTAAACCGGGGAGTGGGGGAGGGCAAGGAGCT
TGAGGAGCATGTGAGGGTTGGGGAGAGGAGGAGGGTGGATCTTGCGCCGG
GTCTCTTCAGCTCAGGTATCATGGAGAGTGGGGCCATTTCGTGCGAAGAA
GCGGCCTTGGGCATAGGTACGACGGAGGAGGAGGGAACAGGGAGAGTAGG
GGATGGAAGTGACAGCAGGATGGAAGGGAGGAGCAGGACCCCTTCGATAT
CCGGGGGAAATTCCGATGCCCCTCCTGGCCCGCCCATGCTGACCCGTTTC
GAGCCAGGGGGTGTGCTGACCGAGTCTAATATGGGGGTTAATGATAGCGA
CATTGACACCACCAGGGAGCAGGGATCGAGGGTTTCGAGCGAACAGGTAT
ATTCAGAGGTTAAAAGAAATCTTGAAGTGTGATGTGTCCTAATTGCCGCA
GTGTCAATCCCAGTTCATTTGGTACAGTGTACTAGAGCCTGCAATTGACT
TGTACTTGTGTGATTAGTACTCCGAAGTGTCCTTTAGCTCTGAATTGCAC
GTTTTAAGGTATGGTCTGAAGTGCTTTTTCCAGTTGCGGTGTGAGTCTGC
TTTCCTTCAAAGTATTCTGGAGTACAAAGAGGACAAAAGTGGTTACGAAT
CGAGACTGTACACTGTTGTACAGAAGTACATCACTCTTGAGTGATGTAGT
ACCATAGCATCAATACAGAACCCACACAGCAGTTCAAATTTTTGCGTCAA
AAGTTGATTGAGTGGTAGCTTATTAGTCCTGTCCAATCCCTGCTGCCGAC
AGGAGGAAACAAGAAGAATGCGCTTTATCGTTCGTTTTGGGCAACACATG
GGCGAGGGAATCTTCGACAATGGCGTAGGGCCTGACGAAATTGTGTCTCA
TATCGACTTAAGCAACATGGGCAATGTGAGCGTAGACAGCAGCAGCGATA
GTGGAACCGGCGGAAACGCGGGTATCGAGGGCGTCTTCTCCGACATGTCC
TTGAGACGGACGCAGCTGTCACCCGAAGGCAGGCCTAGACTCGTGGAGCA
TGCCGTGCCCTTGGGAGCTCTTGAGCAGGAGCTATCACCTGAAAATAGTT
ATCTTTCTCCATCCGAACAAGGCTTGGCTCAGGGGCAAGTTAGCCCTGGG
TGGGCACCAAGCAGAGAAGGGGCTGAATTGGTGCAGAGTGGGAGCGGAAT
CCCTGGTGCGGTTGAAGAAGAGGAGTCCAAGACAGAAGCACC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig940:10825..12066+

>mRNA_D-mesarthrocarpus_Contig940.8.1 ID=mRNA_D-mesarthrocarpus_Contig940.8.1|Name=mRNA_D-mesarthrocarpus_Contig940.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=834bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig940:10825..12066+ (Discosporangium mesarthrocarpum MT17_79)
GGTCTGTGGGTTGGGCAAGTAAACCGGGGAGTGGGGGAGGGCAAGGAGCT
TGAGGAGCATGTGAGGGTTGGGGAGAGGAGGAGGGTGGATCTTGCGCCGG
GTCTCTTCAGCTCAGGTATCATGGAGAGTGGGGCCATTTCGTGCGAAGAA
GCGGCCTTGGGCATAGGTACGACGGAGGAGGAGGGAACAGGGAGAGTAGG
GGATGGAAGTGACAGCAGGATGGAAGGGAGGAGCAGGACCCCTTCGATAT
CCGGGGGAAATTCCGATGCCCCTCCTGGCCCGCCCATGCTGACCCGTTTC
GAGCCAGGGGGTGTGCTGACCGAGTCTAATATGGGGGTTAATGATAGCGA
CATTGACACCACCAGGGAGCAGGGATCGAGGGTTTCGAGCGAACAGGAGG
AAACAAGAAGAATGCGCTTTATCGTTCGTTTTGGGCAACACATGGGCGAG
GGAATCTTCGACAATGGCGTAGGGCCTGACGAAATTGTGTCTCATATCGA
CTTAAGCAACATGGGCAATGTGAGCGTAGACAGCAGCAGCGATAGTGGAA
CCGGCGGAAACGCGGGTATCGAGGGCGTCTTCTCCGACATGTCCTTGAGA
CGGACGCAGCTGTCACCCGAAGGCAGGCCTAGACTCGTGGAGCATGCCGT
GCCCTTGGGAGCTCTTGAGCAGGAGCTATCACCTGAAAATAGTTATCTTT
CTCCATCCGAACAAGGCTTGGCTCAGGGGCAAGTTAGCCCTGGGTGGGCA
CCAAGCAGAGAAGGGGCTGAATTGGTGCAGAGTGGGAGCGGAATCCCTGG
TGCGGTTGAAGAAGAGGAGTCCAAGACAGAAGCA
back to top