mRNA_D-mesarthrocarpus_Contig94.19.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig94.19.1
Unique NamemRNA_D-mesarthrocarpus_Contig94.19.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig94.19.1 vs. uniprot
Match: D7FJG1_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG1_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.110e-12
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  133 HLGCPRCRRVLIVPSREVFRCPCGLLF---RVTSMSEVQLLLRTSQTDNLYAKGTGLPRELVELMPVVTFTERDAAR 354
            HL CPRCRR+LIVP+ + FRC C L+F   R      +QL    S+ + L+ +G GLPRELVE +PV   TE   A+
Sbjct:   24 HLSCPRCRRLLIVPNVDTFRCHCSLVFSKVRDAVGGTMQLCFSLSEQE-LHGQGCGLPRELVERLPVTVVTEEMCAK 99
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig94.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJG1_ECTSI4.110e-1248.05RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig94contigD-mesarthrocarpus_Contig94:41874..43325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJG1
PFAMszf-RING_2
Model size452
Max annot lvl2759|Eukaryota
KEGG koko:K11982
Hectar predicted targeting categorymitochondrion
Exons4
Evalue6.74e-13
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-14_006210.1
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
Cds size450
COG categoryO
BRITEko00000,ko01000,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791093.9385388-CDS-D-mesarthrocarpus_Contig94:41873..420311680791093.9385388-CDS-D-mesarthrocarpus_Contig94:41873..42031Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig94 41874..42031 +
1680791093.9541543-CDS-D-mesarthrocarpus_Contig94:42259..423161680791093.9541543-CDS-D-mesarthrocarpus_Contig94:42259..42316Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig94 42260..42316 +
1680791093.9669445-CDS-D-mesarthrocarpus_Contig94:42628..427471680791093.9669445-CDS-D-mesarthrocarpus_Contig94:42628..42747Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig94 42629..42747 +
1680791093.97608-CDS-D-mesarthrocarpus_Contig94:43207..433231680791093.97608-CDS-D-mesarthrocarpus_Contig94:43207..43323Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig94 43208..43323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig94.19.1prot_D-mesarthrocarpus_Contig94.19.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig94 41874..43323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig94.19.1

>prot_D-mesarthrocarpus_Contig94.19.1 ID=prot_D-mesarthrocarpus_Contig94.19.1|Name=mRNA_D-mesarthrocarpus_Contig94.19.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=150bp
KRSQPIIRGVLSVHFRRSPTMLRWFLRRFSPTSRDSAANLGRNNHLGCPR
CRRVLIVPSREVFRCPCGLLFRVTSMSEVQLLLRTSQTDNLYAKGTGLPR
ELVELMPVVTFTERDAARASASLQGLAKGANAEKLGDSGLVPDTGAADRA
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mRNA from alignment at D-mesarthrocarpus_Contig94:41874..43325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig94.19.1 ID=mRNA_D-mesarthrocarpus_Contig94.19.1|Name=mRNA_D-mesarthrocarpus_Contig94.19.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1452bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig94:41874..43325+ (Discosporangium mesarthrocarpum MT17_79)
AAGCGAAGCCAGCCCATTATCAGAGGAGTGTTGTCGGTCCATTTCCGTCG
TAGCCCGACCATGCTGCGTTGGTTCCTGCGAAGATTCAGCCCCACCTCGA
GGGATTCTGCGGCTAACCTTGGGCGAAATAACCATCTTGGATGCCCCCGA
TGTCGAAGGTCAGAAACTTGATTAGTACCTCACACCGGGAAATGGATGCT
GGGGGGTAGATGAGTTGTTTGGTAAACCTGCGGATATCTCACATCTGTTT
ATCTGTGACCTTACTCTTCGCGCCTGTCAACCTAGGATGGAGCATTTACG
CTGGCTGGTGTCCCGACTATAACCGTACCCTTTCCCCGTGTTGATGCTGT
TATCCCCTTTTGTTGCTCGGCGGTCTTGCTCCGCAGGGTCCTGATTGTGC
CTTCCCGAGAGGTTTTCCGATGTCCATGTGGCTTGTTATTCAGGTGAGAA
AACAGGGGGCGGTGGGGTTAAACCCCCAACCGTAGGGCAACGCGCACGAG
ATATACTCAGAGTCCCGGAATGGGTAGTAGTGGGAATCGTGGAATGCGGG
TCAGTTTATGTGAAGAAAAACAATAATTTCCCCCTGACAGCGGCTTTCAA
CATTGGAGAGACCTGCACACAGCCTTCCCTGGTGCATTGTTTTGTGCACG
TTCGCGCACGTCTTATGACGACTCGGGTGGCCTCCTATCCGAGGGCCCTT
TGCCCGTCGTCGCAAGCGTTGTCACCGCCTTGAAACTCACTCCGGACACT
TTCAGGGTCACCAGCATGAGTGAAGTGCAGCTATTGCTCAGGACAAGTCA
GACGGACAATCTTTACGCTAAGGGGACCGGCTTGCCACGGGAACTGGTGG
AGCTCATGCCTGTGGTAACATTCAGTGAGTCGATTTTTTCCGTTCCATGG
AACGCCATGACAAGAAATAATACTACCAAAGTGAGGTAGATTTTAAATCT
ACAGTGCTGTGCAGTGCTTACAACATATCATACCAGTACATAGGTAATGT
GCCCGTGCACTACAATTGAAAGAGTTACCCAGCTTCCGTGACACCTTGAT
GTGTTCGATCCTCCTCTCTGAGTCGCTTGTAACGTAACCTTCTTGTACTA
CATGAACGTAATTGGCTTGATTGAATAAAGATAGGACTCTCCTGTATGAG
GTCAGTGAATACTTCAAGCAATACTTCGAGAAGCTATATAGTCCATCATG
TTGCAAAAAACCTCTGGTCTTCTCGTGGCATCTGTATGACCGCGCATATC
TGGCGCCTGGTCATGACACGACACTGGCAAAAAAATCCCTGTCTTCTTTT
CAAAAACTCTTCTCATCAACCCTGGATGAAAAAGCGGAGAGAGATGCCGC
CAGGGCAAGCGCGTCATTGCAAGGGTTAGCAAAGGGCGCCAATGCCGAAA
AACTGGGGGACAGCGGGTTGGTGCCTGACACGGGAGCAGCTGACAGGGCA
GG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig94:41874..43325+

>mRNA_D-mesarthrocarpus_Contig94.19.1 ID=mRNA_D-mesarthrocarpus_Contig94.19.1|Name=mRNA_D-mesarthrocarpus_Contig94.19.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=450bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig94:41874..43325+ (Discosporangium mesarthrocarpum MT17_79)
AAGCGAAGCCAGCCCATTATCAGAGGAGTGTTGTCGGTCCATTTCCGTCG
TAGCCCGACCATGCTGCGTTGGTTCCTGCGAAGATTCAGCCCCACCTCGA
GGGATTCTGCGGCTAACCTTGGGCGAAATAACCATCTTGGATGCCCCCGA
TGTCGAAGGGTCCTGATTGTGCCTTCCCGAGAGGTTTTCCGATGTCCATG
TGGCTTGTTATTCAGGGTCACCAGCATGAGTGAAGTGCAGCTATTGCTCA
GGACAAGTCAGACGGACAATCTTTACGCTAAGGGGACCGGCTTGCCACGG
GAACTGGTGGAGCTCATGCCTGTGGTAACATTCACGGAGAGAGATGCCGC
CAGGGCAAGCGCGTCATTGCAAGGGTTAGCAAAGGGCGCCAATGCCGAAA
AACTGGGGGACAGCGGGTTGGTGCCTGACACGGGAGCAGCTGACAGGGCA
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