mRNA_D-mesarthrocarpus_Contig939.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 171 bits (432), Expect = 2.150e-45 Identity = 95/249 (38.15%), Postives = 135/249 (54.22%), Query Frame = 3
Query: 390 SRTWNMHLTATLVSFGFR*SEADPCLLSYIDD*EVTF-LVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGS--GLQLYAFADS-YAGDTNDRCSVSGGAIMFRGSAVSRFSRTQSTWRWATVQ 1124
SR W+ HL L+ GF AD C+ I++ V LV HV ++ + G E CD + ++ P NLG L WY+GC ERDW+ GTL ++Q Y ++L F V +P+ + EE +RELIG L+W+ +R D+++ VR +ARY P + HW G IL Y++RT GI++R+GS GL + F D+ YA DR SVSGG +M G +S FSRTQ +T +
Sbjct: 82 SRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTE 330
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5JSU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU5_9PHAE) HSP 1 Score: 175 bits (444), Expect = 2.360e-45 Identity = 99/237 (41.77%), Postives = 136/237 (57.38%), Query Frame = 3
Query: 393 RTWNMHLTATLVSFGFR*SEADPCLL-SYIDD*EVTFLVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGSGLQLYAFADSYAGDTNDRCSVSGGAIMFRGSAVSRFSRTQS 1100
R W H TLV GF EADPC+ +D+ V LV +V +++ AGS EDC+ L + E LG W+ GC ERD E GTL ++Q+ YID + + FDV S+S +P + + P +D E+ RE IG ++ V SR DVS VR +A ++ P+K HW KIL YL TR GI+Y++GSGL+L + D+ DT +R SVSG A M G+ VS S+T+S
Sbjct: 378 RPWGYHAAETLVENGFEQCEADPCIFRKMVDEVVVMILVIYVDDILVAGSDEDCEELLPSLQQEISHQKLGECEWFDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPASPSVDLGPERDDEKGGKCPVREAIGSMMCVSTFSRPDVSFAVRAVACHAHAPAKRHWDAIQKILGYLKETRDVGITYKRGSGLELAVYVDASYADTENRRSVSGLATMVGGTVVSHGSKTKS 614
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 171 bits (432), Expect = 3.790e-44 Identity = 95/249 (38.15%), Postives = 135/249 (54.22%), Query Frame = 3
Query: 390 SRTWNMHLTATLVSFGFR*SEADPCLLSYIDD*EVTF-LVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGS--GLQLYAFADS-YAGDTNDRCSVSGGAIMFRGSAVSRFSRTQSTWRWATVQ 1124
SR W+ HL L+ GF AD C+ I++ V LV HV ++ + G E CD + ++ P NLG L WY+GC ERDW+ GTL ++Q Y ++L F V +P+ + EE +RELIG L+W+ +R D+++ VR +ARY P + HW G IL Y++RT GI++R+GS GL + F D+ YA DR SVSGG +M G +S FSRTQ +T +
Sbjct: 256 SRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTE 504
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 171 bits (432), Expect = 3.630e-43 Identity = 95/249 (38.15%), Postives = 135/249 (54.22%), Query Frame = 3
Query: 390 SRTWNMHLTATLVSFGFR*SEADPCLLSYIDD*EVTF-LVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGS--GLQLYAFADS-YAGDTNDRCSVSGGAIMFRGSAVSRFSRTQSTWRWATVQ 1124
SR W+ HL L+ GF AD C+ I++ V LV HV ++ + G E CD + ++ P NLG L WY+GC ERDW+ GTL ++Q Y ++L F V +P+ + EE +RELIG L+W+ +R D+++ VR +ARY P + HW G IL Y++RT GI++R+GS GL + F D+ YA DR SVSGG +M G +S FSRTQ +T +
Sbjct: 777 SRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTE 1025
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.970e-43 Identity = 98/236 (41.53%), Postives = 131/236 (55.51%), Query Frame = 3
Query: 393 RTWNMHLTATLVSFGFR*SEADPCLLSYIDD*EVTFLVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGSGLQLYAFADSYAGDTNDRCSVSGGAIMFRGSAVSRFSRTQS 1100
R W H TLV GF +ADPC+ + D EV DC+ L + + EFPT NLG W+ GC +ERD GTLT++Q+ Y+D + + FDV S+S +P + P++D E+ RE IG ++WV SR DVS VR +AR++ P+K HW KILRYL TR GI+Y++GSGL L + D+ DT DR SVS A G+ VS S+TQS
Sbjct: 624 RQWGYHAADTLVENGFEQCKADPCVFRKMVD-EVV----------------DCEELLASLNKEFPTKNLGECEWFDGCAIERDVAAGTLTISQTAYVDSMVKRFDVQSASRIPASPGVDLGPKRDDEKGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILRYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSRLAATVGGTVVSHGSKTQS 842
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE) HSP 1 Score: 159 bits (401), Expect = 4.470e-39 Identity = 92/249 (36.95%), Postives = 131/249 (52.61%), Query Frame = 3
Query: 390 SRTWNMHLTATLVSFGFR*SEADPCLLSYIDD*EVTF-LVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGS--GLQLYAFADS-YAGDTNDRCSVSGGAIMFRGSAVSRFSRTQSTWRWATVQ 1124
SR W+ HL L+ GF AD C+ I++ V LV HV + + G E CD + ++ P NLG L WY+GC ERDW+ GTL ++Q Y ++L F V +P+ + EE +R LIG L+W+ +R D+++ VR + RY P + HW G IL Y++RT GI++R+GS L + FAD+ A DR SVSGG +M G +S FSRTQ +T +
Sbjct: 807 SRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDFIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRGLIGSLMWLATQTRPDIANAVRAVERYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVARLSMEVFADADCARKAADRRSVSGGLVMCVGGCISWFSRTQKCVTLSTTE 1055
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5K9I1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I1_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.370e-38 Identity = 94/265 (35.47%), Postives = 135/265 (50.94%), Query Frame = 3
Query: 390 SRTWNMHLTATLVSFGFR*SEADPCLLSYIDD*EVTF-LVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSW----------------YTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGS--GLQLYAFADS-YAGDTNDRCSVSGGAIMFRGSAVSRFSRTQSTWRWATVQ 1124
SR W+ HL L+ GF AD C+ I++ V LV HV ++ + G E CD + ++ P NLG L W Y+GC ERDW+ GTL ++Q Y ++L F V +P+ + EE +RELIG L+W+ +R D+++ VR +ARY P + HW G IL Y++RT G+++R+GS L + FAD+ YA DR SVSGG +M G +S FSRTQ +T +
Sbjct: 612 SRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTLVPVKNLGDLRWXXXXXXXXXXXXXXXXYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPIEIHWRAGIGILGYVVRTSDLGVTFRRGSVARLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTE 876
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 149 bits (376), Expect = 2.680e-38 Identity = 86/228 (37.72%), Postives = 124/228 (54.39%), Query Frame = 3
Query: 453 ADPCLLSYIDD*EVTF-LVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGS--GLQLYAFADS-YAGDTNDRCSVSGGAIMFRGSAVSRFSRTQSTWRWATVQ 1124
AD C+ I++ V LV HV ++ + G E D + ++ NLG L WY+GC ERDW+ GTL ++Q Y ++L F V +P+ + EE +RELIG L+W+ +R D+++ VR +ARY P + HW G IL Y++RT GI++R+GS GL + FAD+ YA DR SVSGG +M G +S FSRTQ +T +
Sbjct: 2 ADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERYDQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGMKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTE 229
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5KSN7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN7_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.410e-35 Identity = 87/252 (34.52%), Postives = 129/252 (51.19%), Query Frame = 3
Query: 390 SRTWNMHLTATLVSFGFR*SEADPCLLSYIDD*EVTF-LVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGS----GLQLYAFADSYAGDTNDRCSVSGGAIMFRGS------AVSRFSRTQSTWRW 1112
SR W+ HL L+ GF AD C+ I++ V LV HV ++++ G E CD + ++ P N G L WY+GC ERDW+ GTL ++Q Y ++L F V +P+ + EE +RELIG L+W+ R D+++ V+ +ARY P + HW G IL Y++R GI++R+GS G+++ A AD A DR SVSGG + R AV+R+ + W
Sbjct: 1343 SRQWHSHLARCLICLGFIQCLADTCVFRLIEEGRVVATLVVHVDDILSIGEEERCDQFGRDLNTMVPVKNRGDLRWYSGCLYERDWDAGTLKISQQTYAEELGMKFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQMRPDIANAVKAVARYCASPKEIHWRAGLGILGYVVRASDLGITFRRGSVAGLGMEVSADADD-ASKAADRRSVSGGLVXMRPDIANAVKAVARYCASPKEIHW 1593
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE) HSP 1 Score: 142 bits (358), Expect = 6.030e-35 Identity = 79/246 (32.11%), Postives = 132/246 (53.66%), Query Frame = 3
Query: 393 RTWNMHLTATLVSFGFR*SEADPCLLSYIDD*EVT-FLVPHVGNMIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQSPYIDQLSECFDVCSSSLLPVTANEQTLPRQDKEEPEPECYRELIGPLLWVVFMSRLDVSSPVRVLARYSQDPSKTHWPQGFKILRYLIRTRTWGISYRKGSGLQLYAFADS-YAGDTNDRCSVSGGAIMFRGSAVSRFSRTQSTWRWATVQ 1124
R W L+S G+ DPC+ + D EV +V +V +++ + + E+ + L + FP +LG +WY GC +E D E GT ++Q+ YI+ + F+V +++ P ++ P++D E + RE IG L+W++FM R D++ P+ L + + P++ W +I+ YL T+ GI+Y +GSGL L F DS YA T DR S +G A+ G+ V ++TQ +T +
Sbjct: 60 REWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVRETIGCLMWLLFM-RPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTE 304 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig939.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig939.7.1 >prot_D-mesarthrocarpus_Contig939.7.1 ID=prot_D-mesarthrocarpus_Contig939.7.1|Name=mRNA_D-mesarthrocarpus_Contig939.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=204bp MIAAGSGEDCDALCKAHSSEFPTNNLGLLSWYTGCTLERDWERGTLTVTQback to top mRNA from alignment at D-mesarthrocarpus_Contig939:17576..18708- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig939.7.1 ID=mRNA_D-mesarthrocarpus_Contig939.7.1|Name=mRNA_D-mesarthrocarpus_Contig939.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1133bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig939:17576..18708- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig939:17576..18708- >mRNA_D-mesarthrocarpus_Contig939.7.1 ID=mRNA_D-mesarthrocarpus_Contig939.7.1|Name=mRNA_D-mesarthrocarpus_Contig939.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=612bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig939:17576..18708- (Discosporangium mesarthrocarpum MT17_79)back to top |