mRNA_D-mesarthrocarpus_Contig9380.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9380.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9380.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A7S2EMP2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EMP2_TRICV)

HSP 1 Score: 104 bits (260), Expect = 1.860e-26
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   25 EDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            EDY+Y L G+LVHAGVAQGGHYYSFI+DR    S   GE A D WYRFDDEDVTPF+P +IE ECFGG V
Sbjct:  120 EDYEYKLAGVLVHAGVAQGGHYYSFIKDR----SSPNGE-AGDKWYRFDDEDVTPFDPSSIEVECFGGKV 184          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A7S1GLT2_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GLT2_CYCTE)

HSP 1 Score: 99.8 bits (247), Expect = 7.930e-25
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   25 EDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            EDY+Y L G+LVHAGVAQGGHYYSFI+DR +++           WYRFDDEDVTPF+P  IE ECFGG V
Sbjct:    1 EDYEYQLAGVLVHAGVAQGGHYYSFIKDRSSESP------KNHKWYRFDDEDVTPFDPSQIEVECFGGKV 64          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A7R9Z3C7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3C7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.870e-24
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   25 EDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            EDY+YNL G+LVHAGVAQGGHYYSFI+DR        GEGA D WYRFDDEDVT F+P +IE ECFGG V
Sbjct:  757 EDYEYNLAGVLVHAGVAQGGHYYSFIKDR----FSPNGEGA-DKWYRFDDEDVTQFDPSSIEVECFGGKV 821          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A7S2SBY5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SBY5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.110e-24
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   19 DAEDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            D +DYKY L G+LVHAGVAQGGHYYSFI+DR    S    E + D WYRFDDEDVTPF+P  IE ECFGG V
Sbjct:  241 DDDDYKYKLAGVLVHAGVAQGGHYYSFIKDR----SSGSAEDS-DKWYRFDDEDVTPFDPSLIEVECFGGKV 307          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A7S3DLT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DLT0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.190e-24
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   25 EDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            EDY+Y L G+LVHAGVAQGGHYYSFIRDR  D          + WYRFDDEDVTPFN  +IE ECFGG V
Sbjct:  311 EDYEYKLAGVLVHAGVAQGGHYYSFIRDRSPDGE--------EKWYRFDDEDVTPFNQASIETECFGGKV 372          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: B7FZZ6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FZZ6_PHATC)

HSP 1 Score: 102 bits (254), Expect = 1.370e-23
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   25 EDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            EDY+Y L G+LVHAGVAQGGHYYSFI+DR          G+ + WYRFDDEDVTPF+P  IE ECFGG V
Sbjct:  380 EDYEYKLAGVLVHAGVAQGGHYYSFIKDRNP--------GSEEKWYRFDDEDVTPFDPAAIETECFGGKV 441          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A1Z5K2Z6_FISSO (Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2Z6_FISSO)

HSP 1 Score: 102 bits (253), Expect = 1.890e-23
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   25 EDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            EDY+Y L G+LVHAGVAQGGHYYSFI++RG   +        D WYRFDDEDVTPF+P  IE ECFGG V
Sbjct: 2028 EDYEYRLVGVLVHAGVAQGGHYYSFIKERGPGTNA-------DKWYRFDDEDVTPFDPAMIESECFGGRV 2090          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A7S4EF98_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF98_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.500e-23
Identity = 46/70 (65.71%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   25 EDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            EDY+Y L G+LVHAGVAQGGHYYSFI DR          G+ D WYRFDDEDVTPF+P  I  ECFGG V
Sbjct:  488 EDYEYKLAGVLVHAGVAQGGHYYSFINDRNP--------GSEDKWYRFDDEDVTPFDPALIATECFGGKV 549          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A7S1VJV7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJV7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.550e-23
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   28 DYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            DY+Y L G+LVHAGVAQGGHYYSFI+DR  +A   +     D WYRFDDEDVTPF+  +IE ECFGG V
Sbjct: 1706 DYEYKLVGVLVHAGVAQGGHYYSFIKDRSKNADGVE----EDKWYRFDDEDVTPFDSASIETECFGGKV 1770          
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Match: A0A1E7ENI9_9STRA (Cysteine proteinase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ENI9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.880e-23
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   25 EDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGARDGWYRFDDEDVTPFNPVNIERECFGGSV 234
            EDY+Y L G+LVHAGVAQGGHYYSFI+DR          G+ + WYRFDDEDVTPF+P ++  ECFGG V
Sbjct:  651 EDYEYKLAGVLVHAGVAQGGHYYSFIKDRNP--------GSEEQWYRFDDEDVTPFDPASLALECFGGKV 712          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9380.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2EMP2_TRICV1.860e-2671.43Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1GLT2_CYCTE7.930e-2564.29Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7R9Z3C7_9STRA2.870e-2471.43Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2SBY5_9STRA4.110e-2468.06Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3DLT0_9STRA5.190e-2467.14Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
B7FZZ6_PHATC1.370e-2365.71Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5K2Z6_FISSO1.890e-2365.71Ubiquitin carboxyl-terminal hydrolase 9/24 n=2 Tax... [more]
A0A7S4EF98_9STRA6.500e-2365.71Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1VJV7_9STRA6.550e-2365.22Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7ENI9_9STRA8.880e-2362.86Cysteine proteinase (Fragment) n=1 Tax=Fragilariop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9380contigD-mesarthrocarpus_Contig9380:378..1449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr46080
PFAMsUCH
Model size240
Max annot lvl2836|Bacillariophyta
KEGG koko:K11840
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.24e-24
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota,2XARP@2836|Bacillariophyta
EC3.4.19.12
DescriptionBelongs to the peptidase C19 family
Cds size240
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791091.9239583-CDS-D-mesarthrocarpus_Contig9380:377..4671680791091.9239583-CDS-D-mesarthrocarpus_Contig9380:377..467Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9380 378..467 -
1680791091.936313-CDS-D-mesarthrocarpus_Contig9380:1299..14491680791091.936313-CDS-D-mesarthrocarpus_Contig9380:1299..1449Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9380 1300..1449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9380.1.1prot_D-mesarthrocarpus_Contig9380.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9380 378..1449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9380.1.1

>prot_D-mesarthrocarpus_Contig9380.1.1 ID=prot_D-mesarthrocarpus_Contig9380.1.1|Name=mRNA_D-mesarthrocarpus_Contig9380.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=80bp
AAKTQEDAEDYKYNLKGILVHAGVAQGGHYYSFIRDRGADASCAQGEGAR
DGWYRFDDEDVTPFNPVNIERECFGGSVVT
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mRNA from alignment at D-mesarthrocarpus_Contig9380:378..1449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9380.1.1 ID=mRNA_D-mesarthrocarpus_Contig9380.1.1|Name=mRNA_D-mesarthrocarpus_Contig9380.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1072bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9380:378..1449- (Discosporangium mesarthrocarpum MT17_79)
GCCGCCAAGACACAAGAGGACGCAGAGGACTACAAGTACAACCTCAAGGG CATACTTGTCCATGCGGGGGTTGCCCAAGGCGGGCATTATTACTCATTTA TTCGGGACCGTGGAGCAGACGCTTCCTGTGCCCAGGGAGAAGGAGCACGG GTGGGGACAGGGGCTGGGGCTGGGGGGGTGAGCGGGGGCGGAGGCGGAGG CAACGGGGATGGGGACGGGGAAGGGAGGAGGGGAAGAGTGGGGGGGGGTG ATGGGAGTGGGATGGGAGGGGCTGGGGCATGTGATGGAGAAGGGGGGATC AGTGGGACTGTGAGTGACAAGGGGGGGGGAAGGATGTTGGGCTGGGCTCA GAGGGTTGGCATCATGTGTGTTTTCAAAGGGTTAGGGATAGGGTTAGGTT TTTAGTGCCTGTGGTGGAGGGAGGTGACACGAAGTTATTTGCAAGCGGAA GGTCCGGAATCTATTGTTTGGGGAATTCCTGCATTGAGTGTCAAGCGCCC CTGCCAGAGATAGGCCAGGGTTGGTTGTCTTGTTCGAAGGGGTTTAGGGC TAGGGCAGGGGCAGGGGCAGGGGCAGGGGCATTGGTGGGGGTGGGGATGT TGATGCAGTGGAGAGGGGTAGAAATTCAATATTGTTTTTTTTCTTCAGGC ATTTTTTGTTTTTCTTTTTTCTGTGGGTGTGTACATGTCGAAGAGTTTTG CACTTTTGTTGTTCGTCTGCTCAGCCCTCTAGGTTTTTTTTGTGGAATAG CCCTGGTGGTTAGAGAGACAGACAGAGACAGAGACAGGGAGAGGGAGAGG TGTTTTCTTGCTCTAAGGGTGACTCAGATACCTGGCACGTTTTCATTCAT TGCTTACTCCCCTTTTATGCTTTCCCTCATGTTCTCTCCCTCTTGTTAAC GTTACTCTGCTGTTCTCGCCGATCCGATGTGCTGTGCGGATCTGTTGGTT GCGCCCCTGCCGTCTCCTTTGGTTCCTCTCAGGACGGTTGGTATCGGTTT GACGACGAGGATGTGACCCCCTTCAATCCGGTCAACATCGAGAGGGAGTG CTTCGGCGGCTCCGTGGTCACC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9380:378..1449-

>mRNA_D-mesarthrocarpus_Contig9380.1.1 ID=mRNA_D-mesarthrocarpus_Contig9380.1.1|Name=mRNA_D-mesarthrocarpus_Contig9380.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=240bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9380:378..1449- (Discosporangium mesarthrocarpum MT17_79)
GCCGCCAAGACACAAGAGGACGCAGAGGACTACAAGTACAACCTCAAGGG
CATACTTGTCCATGCGGGGGTTGCCCAAGGCGGGCATTATTACTCATTTA
TTCGGGACCGTGGAGCAGACGCTTCCTGTGCCCAGGGAGAAGGAGCACGG
GACGGTTGGTATCGGTTTGACGACGAGGATGTGACCCCCTTCAATCCGGT
CAACATCGAGAGGGAGTGCTTCGGCGGCTCCGTGGTCACC
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