mRNA_D-mesarthrocarpus_Contig938.3.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig938.3.2
Unique NamemRNA_D-mesarthrocarpus_Contig938.3.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: A0A6H5KW76_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW76_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.690e-42
Identity = 73/130 (56.15%), Postives = 100/130 (76.92%), Query Frame = 2
Query:  116 EGETGTLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTEDRTATEK-----MPLLYGIIDMLKRWR 490
            EG  GT+++L+ A+ E L+H GVLGK++A++RA V+  L+GP +GVL  P++N+NLLINEL+RDY+ YN Y NAL VF+AESGQP +R+LDR F+RDELG++E R +T+      +PLLYGI   LKR R
Sbjct:   16 EGGDGTIDDLKQALVENLEHRGVLGKLRAKVRAEVFHTLEGPQEGVLPTPLSNENLLINELVRDYLSYNGYSNALGVFMAESGQPIERSLDRGFIRDELGLSERRDSTDHGSARPLPLLYGITHALKRRR 145          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: D7FVJ9_ECTSI (Similar to chemokine (C-C motif) receptor 6a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ9_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.820e-41
Identity = 73/130 (56.15%), Postives = 97/130 (74.62%), Query Frame = 2
Query:  116 EGETGTLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTE-----DRTATEKMPLLYGIIDMLKRWR 490
            EG  GT+++L+ A+ E L+H GVLGK++A++RA V+  L+GP + VL  P++NDNLLINEL+RDY+ YN Y NAL VF+AESGQP +R+LDR F+RDELG++E     DR     +PLLYGI   LKR R
Sbjct:   16 EGGDGTIDDLKQALVENLEHRGVLGKLRAKVRAEVFHTLEGPQERVLPTPLSNDNLLINELVRDYLSYNGYANALGVFMAESGQPIERSLDRGFIRDELGLSERLDSIDRGGARPLPLLYGITHALKRRR 145          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: A0A835YQT6_9STRA (LisH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 7.360e-34
Identity = 66/151 (43.71%), Postives = 99/151 (65.56%), Query Frame = 2
Query:   80 KYLYPMQSDAKDEGETGTLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLH--PPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTE--DRTATEKMPLLYGIIDMLKRWRAGDRENGVQE 520
            + L    +  + EG  GTL++L+ A+ + L+ +G LGK++A++RA V+  L+          PP++N NL+INELIRDY  YN Y +ALSVFL+ES QP+D +L R F+RDELGV+E  D    +++PLLYGI+ ML++W+    +    E
Sbjct:    6 QVLEADDAPLQQEGAAGTLDDLKDALVDALESSGALGKLRARVRAEVFKSLEPEELATRETAPPLSNANLIINELIRDYFEYNGYSHALSVFLSESCQPDDASLSRGFIRDELGVSEELDSARQKQLPLLYGILHMLQKWKRDSEQQPALE 156          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: A0A024GKL4_9STRA (LisH domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKL4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 9.090e-30
Identity = 63/130 (48.46%), Postives = 91/130 (70.00%), Query Frame = 2
Query:  131 TLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTEDRTATEKMPLLYGIIDMLKRWRAGDRENGVQE 520
            +L EL+  +KETL+  G LG+IKA+IRA ++  L   S  +  P ++N+NL++NELIR+Y+ YN Y +ALSVFL ESGQP ++A  R+FL  ELGV ED   T+ +PLLY I+ +L++ R  + + G QE
Sbjct:    7 SLSELKEVLKETLETRGCLGQIKARIRAEIFSALDDQS--IPKPELSNENLILNELIREYLEYNGYRHALSVFLPESGQPTEKAFPRSFLSSELGVREDARFTQ-IPLLYNILFILQQRRENNAK-GAQE 132          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: A0A1V9YC06_9STRA (LisH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC06_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.880e-29
Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 2
Query:  122 ETGTLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTEDRTATEKMPLLYGIIDMLKRWRAGDRENG 511
            ET +L +L+ A+KETL+  G LG IKA++RA ++  L    +G   P ++N+NL+INELIR+Y+ YN Y + LSVFL ESGQP +R   R FL  EL +TED    + +PLLYGI+  L+  +A ++ +G
Sbjct:    3 ETLSLADLKDALKETLEARGTLGPIKARLRAEIFQALD---EGATKPKLSNENLIINELIREYLEYNGYRHTLSVFLPESGQPQERPFQRRFLAHELNITEDPRYNQ-VPLLYGIVTALQDAKASNQGDG 128          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: A0A1S3I2D6_LINUN (lisH domain-containing protein FOPNL n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I2D6_LINUN)

HSP 1 Score: 112 bits (280), Expect = 2.620e-28
Identity = 59/113 (52.21%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  134 LEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTEDRTATE-KMPLLYGII 469
            L+EL+  VKETL+  GVLG+IKA++RA V++ L   +D    PP++N+N++INELIR+Y+ YN+Y    SV LAE+GQP    L+R FL ++L V ED+TA+  K+PLLY II
Sbjct:    4 LQELKTVVKETLEKRGVLGQIKARVRAEVFNALDDQADP--RPPLSNENMIINELIREYLEYNKYKYTASVMLAETGQPKT-PLNREFLAEQLNVVEDKTASSLKLPLLYSII 113          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: A0A8B7Y9V1_ACAPL (lisH domain-containing protein FOPNL-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y9V1_ACAPL)

HSP 1 Score: 112 bits (279), Expect = 4.020e-28
Identity = 59/113 (52.21%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  131 TLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTEDRTATEKMPLLYGII 469
            +++EL+  ++ETL+  GVLG+IKA++RA V+  L   SD    PP++N+N+LINELIR+Y+ +N+Y  A SV +AESGQP    LDR FL +EL +TEDR  T  +PLLYGI+
Sbjct:    3 SVQELKSVLRETLETRGVLGQIKARVRAEVFHALDDQSDP--RPPLSNENMLINELIREYLEFNKYKYAASVLMAESGQPQT-PLDREFLVNELNITEDRD-TATVPLLYGIL 111          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: UPI0001CB9CE3 (lisH domain-containing protein FOPNL-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9CE3)

HSP 1 Score: 112 bits (279), Expect = 4.130e-28
Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 2
Query:  131 TLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTEDRTATEKMPLLYGII 469
            T++EL+  +KETL++ GVLG+I+A++RA V++ L   +D    PP++N+N+LINEL+R+Y+ +N+Y    SV LAESGQP    LDR FL +EL +T DR  T  +PLLYGII
Sbjct:    3 TIQELKSVLKETLENRGVLGQIQARVRAEVFNALDDQTDP--RPPLSNENMLINELVREYLQFNKYKYTESVLLAESGQPTT-PLDRQFLTNELNITADRD-TASVPLLYGII 111          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: UPI001BB1D324 (centrosomal protein 20-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1D324)

HSP 1 Score: 110 bits (276), Expect = 1.130e-27
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 2
Query:  137 EELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTEDRTATEKMPLLYGII 469
            +EL+  VKETL++NGVLG+IKA++RA V+  L  P+     PP++N+N+LINELIR+Y+ +N Y    SV L+ESGQP    LDR FL  EL + EDR  T  +PLLYGI+
Sbjct:    5 QELKAVVKETLENNGVLGEIKARVRAEVFRALDDPNQR--KPPLSNENMLINELIREYLEFNHYKYTSSVLLSESGQPTT-PLDRQFLATELNLVEDRN-TSSIPLLYGIL 111          
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Match: A0A8C4STF1_ERPCA (FGFR1OP N-terminal like n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4STF1_ERPCA)

HSP 1 Score: 110 bits (274), Expect = 1.310e-27
Identity = 61/128 (47.66%), Postives = 90/128 (70.31%), Query Frame = 2
Query:  131 TLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPSDGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRTFLRDELGVTEDRTATEKMPLLYGIIDMLKRWRAGDRENGV 514
            T+ EL+ A+KETLD  GVLG++KA+IRA V++ L   S+    PP++++NLL+NELIR+Y+ +N+Y    SV  AESGQP +  LDR F+ +EL VTED +A   +PLLYG++    + + G+R N +
Sbjct:    3 TIAELKAALKETLDSRGVLGQLKARIRAEVFNALDDQSES--KPPLSHENLLVNELIREYLEFNKYRYTASVLTAESGQP-EVPLDRQFILNELNVTEDASA-RSVPLLYGMLAHFLQEK-GERGNRI 125          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig938.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW76_9PHAE2.690e-4256.15LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FVJ9_ECTSI2.820e-4156.15Similar to chemokine (C-C motif) receptor 6a n=1 T... [more]
A0A835YQT6_9STRA7.360e-3443.71LisH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A024GKL4_9STRA9.090e-3048.46LisH domain-containing protein n=1 Tax=Albugo cand... [more]
A0A1V9YC06_9STRA3.880e-2946.92LisH domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A1S3I2D6_LINUN2.620e-2852.21lisH domain-containing protein FOPNL n=1 Tax=Lingu... [more]
A0A8B7Y9V1_ACAPL4.020e-2852.21lisH domain-containing protein FOPNL-like n=1 Tax=... [more]
UPI0001CB9CE34.130e-2851.33lisH domain-containing protein FOPNL-like n=1 Tax=... [more]
UPI001BB1D3241.130e-2753.15centrosomal protein 20-like n=1 Tax=Lytechinus var... [more]
A0A8C4STF1_ERPCA1.310e-2747.66FGFR1OP N-terminal like n=2 Tax=Polypteridae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig938contigD-mesarthrocarpus_Contig938:18938..20001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVJ9
Preferred nameFOPNL
PFAMsFOP_dimer,LisH
Model size520
Max annot lvl2759|Eukaryota
KEGG koko:K16535
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034451,GO:0036064,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
Evalue2.09e-42
EggNOG OGs2B269@1|root,2S0C1@2759|Eukaryota
Ec32 ortholog descriptionLIS1 domain protein
Ec32 orthologEc-15_003580.1
Descriptionmicrotubule anchoring
Cds size426
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791091.770521-CDS-D-mesarthrocarpus_Contig938:18937..190481680791091.770521-CDS-D-mesarthrocarpus_Contig938:18937..19048Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig938 18938..19048 -
1680791091.7871578-CDS-D-mesarthrocarpus_Contig938:19445..196491680791091.7871578-CDS-D-mesarthrocarpus_Contig938:19445..19649Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig938 19446..19649 -
1680791091.8026538-CDS-D-mesarthrocarpus_Contig938:19796..199071680791091.8026538-CDS-D-mesarthrocarpus_Contig938:19796..19907Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig938 19797..19907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791091.815857-UTR-D-mesarthrocarpus_Contig938:19907..200011680791091.815857-UTR-D-mesarthrocarpus_Contig938:19907..20001Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig938 19908..20001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig938.3.2prot_D-mesarthrocarpus_Contig938.3.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig938 18938..19907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig938.3.2

>prot_D-mesarthrocarpus_Contig938.3.2 ID=prot_D-mesarthrocarpus_Contig938.3.2|Name=mRNA_D-mesarthrocarpus_Contig938.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=142bp
MQSDAKDEGETGTLEELEGAVKETLDHNGVLGKIKAQIRAAVYDVLQGPS
DGVLHPPMANDNLLINELIRDYMVYNRYDNALSVFLAESGQPNDRALDRT
FLRDELGVTEDRTATEKMPLLYGIIDMLKRWRAGDRENGVQE
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mRNA from alignment at D-mesarthrocarpus_Contig938:18938..20001-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig938.3.2 ID=mRNA_D-mesarthrocarpus_Contig938.3.2|Name=mRNA_D-mesarthrocarpus_Contig938.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1064bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig938:18938..20001- (Discosporangium mesarthrocarpum MT17_79)
GATATTTTAAACTCAGGTCACACTGCAAACTGTGAACACCTCACCCGGTG CGTGTCTTGACTGATCAAGGGGTGGATAGAAGTACTTATATCCGATGCAG TCTGACGCTAAAGATGAGGGTGAGACGGGCACCCTCGAAGAGCTCGAAGG CGCAGTGAAGGAAACCCTAGATCACAATGGCGTCTTGGGAAAGATCAAAG CTCAGGTATGTCTTTCAGCACATTCAGGTCAACAACGCGTCGAGAAGGAC GCACTGCCACAGAAATCAACTTACTTTGTGCTCAACTGAACCTCTCTGGC GATTGATGAACCCCCTGCTCACGGTCACTTTCCTACCTTGCTGCTGGAGA AGATCAGGGCGGCGGTGTACGATGTTCTGCAGGGGCCATCGGACGGTGTG CTTCACCCGCCCATGGCGAACGATAACCTCCTCATCAACGAGCTTATCCG CGACTACATGGTGTACAATCGATATGACAACGCTCTCAGCGTGTTCCTGG CAGAGTCCGGGCAGCCGAACGACAGAGCACTGGATAGGACTTTTCTACGC GATGAGGTACCGGCCAACTTCAAGATCATCAAAACAAAGACCCAATTCTA TTTTTGTGCGCACGCTTCCCTGACACCGTTCTTTTTGAGTTATCATCAAG ACACTTCCTTGAGCCCGTAGCGTGATCTCACCCCCCTGGTGTTGGAAATT GTGTCGCTGACCTGTAAGTGTTGATAGCCAAAGAGAGGCCTCAAAGATTT TTTTTTTTGGTATCACGATCCCACTTTGACCGTGCCCTGTTGTAGCAACT TTGACCTTGCCCTGTCGTAGTAAGCGCCGTACCCAAAATATCTTACTGCT CCCGTTATAGTGAGTGTGATTAACGTTGATGAGCTCCTTTCGCGGGGGAG CAGTACTCAACACCGGTCTCCGTCTACGTCTCCATCTTCATCTCATCCCG CAGCTGGGAGTGACGGAAGATCGGACAGCCACAGAAAAGATGCCCCTCCT GTATGGCATCATCGATATGCTCAAGCGATGGCGGGCGGGGGATCGAGAAA ACGGGGTGCAGGAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig938:18938..20001-

>mRNA_D-mesarthrocarpus_Contig938.3.2 ID=mRNA_D-mesarthrocarpus_Contig938.3.2|Name=mRNA_D-mesarthrocarpus_Contig938.3.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=426bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig938:18938..20001- (Discosporangium mesarthrocarpum MT17_79)
ATGCAGTCTGACGCTAAAGATGAGGGTGAGACGGGCACCCTCGAAGAGCT
CGAAGGCGCAGTGAAGGAAACCCTAGATCACAATGGCGTCTTGGGAAAGA
TCAAAGCTCAGATCAGGGCGGCGGTGTACGATGTTCTGCAGGGGCCATCG
GACGGTGTGCTTCACCCGCCCATGGCGAACGATAACCTCCTCATCAACGA
GCTTATCCGCGACTACATGGTGTACAATCGATATGACAACGCTCTCAGCG
TGTTCCTGGCAGAGTCCGGGCAGCCGAACGACAGAGCACTGGATAGGACT
TTTCTACGCGATGAGCTGGGAGTGACGGAAGATCGGACAGCCACAGAAAA
GATGCCCCTCCTGTATGGCATCATCGATATGCTCAAGCGATGGCGGGCGG
GGGATCGAGAAAACGGGGTGCAGGAA
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