mRNA_D-mesarthrocarpus_Contig9371.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9371.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig9371.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 5.740e-59
Identity = 165/492 (33.54%), Postives = 253/492 (51.42%), Query Frame = 1
Query:    1 GVGAGDLLAQMVEDTAGARALQRPVQAFVSSCHEPTVCRAGRLLTERAFALEHVGCASRKLEQTLAVGLGILGGEAAGVQEAVAAARRLVCRYAPQSRAASRLRECCILKGIVLEESLWRLGRKDCSWWSVYTVVEGLLRMREAVRLHEHVDGLAPAATEEHWTILSMLLPKLDPLVETRKMLEDHDSITSSLVIPFLHDLLGDLRTAVKDFEGKESRDSSSTSSDTLFNMRVCCQQMLGNFESWWGDG-NVVTPREGRGDAPVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAMTTLEARRA-----AGEDTTTPEXXXRAVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDESAMVRSRLRQSAQLELSAFREAPGMPMYDHIAGDRGGGRVKLDPLQWWARRVKEFPILARVARRVLATPATQAQAEGAFLSGSGPDGAPLSPEQLPGAAMNLPHTDLLVYLRNTWPTVDKW 1458
            G   G+ LA +V        L   V A V+ C EP++ +AGRLL      + H+GC++ ++E T +    +  G + G   A+  AR LV RY   S+ A+RL + C   GI+  E L  +   +  WWS + +V  LL + +A++LHE +D + P  ++  W +L ++ P L P ++ +K LE    +T S+ I  + +L   L  A+ D +    +    T+   +  +R   + ++ +F + WGDG N++  REG+   P GF R QV ATALDPR K LYGI + EH  VW  V   A+     + A     A  +    +      AP                     XXXXXXXXXXXXX  DE    R +L     +E+SAF+ APG+ ++D    + G  +V  +PL  W ++  E+P+LA +ARRVLA P++QAQ+E  F +     G  ++P +   + +   + +LLVYLRN W  VD+W
Sbjct:   82 GTTTGEDLAALVAGMVERHDLTGRVIACVTDC-EPSMIKAGRLLEVDGSTISHIGCSNHRMESTTS---SVFNGRSLG---ALGLARTLVGRYKKSSQMAARLVQLC---GILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGVWRAVASAAVDIALGKHAGDKAPASAEKPASDPVQTQPAPLGGGQGASKRPRMSAFEAAAAXXXXXXXXXXXXXSADEK---REQLVAIVDMEVSAFKAAPGIRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTA----GLTVTPTR---SRLLDENVELLVYLRNVWGVVDEW 553          
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.180e-50
Identity = 135/440 (30.68%), Postives = 218/440 (49.55%), Query Frame = 1
Query:   13 GDLLAQMVEDTAGARALQRPVQAFVSSCHEPTVCRAGRLLTERAFALEHVGCASRKLEQTLAVGLGILGGEAAGVQEAVAAARRLVCRYAPQSRAASRLRECCILKGIVLEESLWRLGRKDCSWWSVYTVVEGLLRMREAVRLHEHVDGLAPAATEEHWTILSMLLPKLDPLVETRKMLEDHDSITSSLVIPFLHDLLGDLRTAVKDFEGKESRDSSSTSSDTLFNMRVCCQQMLGNFESWWGDGN-VVTPREGRGDAPVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAMTTLEARRAAGEDTTTPEXXXRA--VAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDESAMVRSRLRQSAQLELSAFREAPGMPMYDHIAGDRGGGRVKLDPLQWWARRVKEFPILARVARRVLATPATQAQAE 1323
            G+ LA+ +        L   V A V+ C EP++ +AGRLL      LEH+GC++ ++E T +    +  G++ G   A+A AR +V RY   S+ + RL    +  GI+    L  L   +  WWS + ++E LL + +A++LHE  D +AP  +E  W +L ++ P L P ++ +K LE    +T S+ +P + +L   L  A+ D    +    S+++ + +  +    + +  +F + WGDG+ ++  REG+   P GF   QV ATA+DPR K LYGI + EH +VW  V  +A+  + A + + ++T T      A  V                                     G      R +L     LE+++F+  PG+ ++ +   D  G +V  DPL WW  R  EFP LA +ARRVLA P++QA +E
Sbjct:  122 GEDLAREITSMIERHGLTGRVTACVTDC-EPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTS---SVFNGKSLG---ALAKARAVVGRYKRSSQMSGRL---AVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVD-IAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIW-YWGTD--GKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSE 547          
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 9.120e-37
Identity = 175/518 (33.78%), Postives = 249/518 (48.07%), Query Frame = 1
Query:   10 AGDLLAQMVEDTAGARALQRPVQAFVSSCHEPTVCRAGRLLTERAFALEHVGCASRKLEQTLAVGLGILGGEAAGVQEAVAAARRLVCRYAPQSRAASRLRECCILKGIVLEESLWRLGRKDCSWWSVYTVVEGLLRMREAVRLHEHVDGLAPAATEEHWTILSMLLPKLDPLVETRKMLEDHDSITSSLVIPFLHDLLGDLRTAVKDFEGKESRDSSSTSSDTLFNMRVCCQQMLGNFESWWGDG-NVVTPREGRGDAPVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAMTTLEARRAAGEDTTTPEXXXRAVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDESAMV---------------------------------------RSRLRQSAQLELSAFREAPGMPMYDHIAGDRGGGRVKLDPLQWWARRVKEFPILARVARRVLATPATQAQAEGAFLSGSGPDGAPLSPEQLPGAAMNLPHTDLLVYLRNTWP 1443
            AG+ L + V+       L     A  + C E ++ +AGRLL E    + H+GC   +LE   +   G       GV +A+A AR +V RY   S+A+ RL + C    IV  E    +   +  WWS Y  +  L+ +R  +  HE +D   P   E+ W +L ++   L P +  +K LE    +T  LV P++ DL   L  AV+  +   S  + S  ++   ++ +C Q +  +    WGD  +V+   EG    P GF + QVLATAL PR+K LYGI E EH  VWD    EA+      +A  +      XXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G  S+ +                                       R ++      E+ AF+  PG+     ++ +  G  V+  PL+WW  + +E+P LA +ARRVL  PA QAQ+E  F S     G  ++  +   A M+  +  L+V+LRNT P
Sbjct:   50 AGEDLVEAVKAMIARNGLTGRTVAITTDC-ELSMVKAGRLLEENE-GVTHLGCFCHRLESITSQAFG-----GPGVSKALALARGVVTRYTISSQASDRLEQVC---DIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQA-HSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAIEAKATEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQSAGASSSPIPVEPAXXXXXXXXXXXXXXXXXXAHGDKQQSANASSSPLRRQMESIISREVDAFKITPGLA----VSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSA----GLVVTKTR---ARMDPENVGLMVFLRNTPP 545          
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 5.800e-30
Identity = 103/315 (32.70%), Postives = 151/315 (47.94%), Query Frame = 1
Query:   13 GDLLAQMVEDTAGARALQRPVQAFVSSCHEPTVCRAGRLLTERAFALEHVGCASRKLEQTLAVGLGILGGEAAGVQEAVAAARRLVCRYAPQSRAASRLRECCILKGIVLEESLWRLGRKDCSWWSVYTVVEGLLRMREAVRLHEHVDGLAPAATEEHWTILSMLLPKLDPLVETRKMLEDHDSITSSLVIPFLHDLLGDLRTAVKDFEGKESRDSS---STSSDTLFNMRVCCQQMLGNFESWWGDGNVVTPREGRGDAPVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAM-TTLEARRAAGEDT 945
            G+ L + V+       L     A  + C EP++ +AGRLL E    + H+GC   +LE   +   G       GV +A+A ARR+V RY   S+A+ RL +   ++ IV  E    +   +  WWS Y  +  LL +R  +  HE +D + P   E+ W +L ++ P   P + ++K  E    +T SLVIP++ DL  +L  AV+  +       S       D  F  +      +           +V PR        GF + QVLATALDPR+K LYGI E EH  VW+ V  EA+   +EA+  A EDT
Sbjct:   95 GEDLVEAVKAMIARNGLTSRTVATTTDC-EPSMVKAGRLLEENE-GVTHLGCFCHRLESITSQAFG-----GPGVSKALALARRVVTRYNMSSQASDRLEQ---MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESIVAEAKKDVFFAPKHVRPTSV-----------IVEPR--------GFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAK--ATEDT 378          
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.430e-26
Identity = 98/313 (31.31%), Postives = 147/313 (46.96%), Query Frame = 1
Query:   13 GDLLAQMVEDTAGARALQRPVQAFVSSCHEPTVCRAGRLLTERAFALEHVGCASRKLEQTLAVGLGILGGEAAGVQEAVAAARRLVCRYAPQSRAASRLRECCILKGIVLEESLWRLGRKDCSWWSVYTVVEGLLRMREAVRLHEHVDGLAPAATEEHWTILSMLLPKLDPLVETRKMLEDHDSITSSLVIPFLHDLLGDLRTAVKDFEGKESRDSSSTSSDTLFNMRVCCQQMLGNFESWWGDG-NVVTPREGRGDAPVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAM-TTLEARRAAGEDT 945
            G+ L + V+       L     A  + C EP + +AGRLL E    + H+GC   + E   +   G       GV +A+A  R +V RY   S+A++RL + C    IV  E    +   +  WWS                    +D + P   E+ W +L ++ P L P +  +K LE    +T SLV  ++ DL  +L  A++  +   S  + S  ++   ++  C   +  +    W DG +V+   EG    P GF + QVLATALDPR+K LYGI E EH  VW+ V  EA+   +EA+  A EDT
Sbjct:   39 GEDLVEAVKAMIARNGLTGRTVATTTDC-EPFMVKAGRLLEENE-GVSHLGCFCHRFESITSQAFG-----GPGVSKALALPRGVVTRYTMSSQASNRLEQMC---DIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAY-SCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAK--ATEDT 322          
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.560e-26
Identity = 115/257 (44.75%), Postives = 151/257 (58.75%), Query Frame = 1
Query:  721 NFESWWGDG-NVVTPREGRGDAPVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAMT-TLEARRAAGEDTTTPEXXXRAVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------EGDESAMVRSRLRQSAQLELSAFREAPGMPMYDHIAGDRGGGRVKLDPLQWWARRVKEFPILARVARRVLATPATQAQAEGAFLSGSGPDGAPLSPEQLPGAAMNLPHT--DLLVYLRNTWPTVDKW 1458
            +F + WGDG N++  +EGR   P GF   QVLATALDPRTK+LYG+ E+E   VW +V  EA+   +E R +      + +        XXXXXXXXXXXXXXXXXXXXXXXXXXXX             EG +S+ VR  +  S ++EL+AF+ + G+ MY+    D+ G +V LDPL WW  R  +FP LA +ARRVLA PATQA++E  F               +     NL  T  +LLV LR++W  V++W
Sbjct:   50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRL-ITSSVRVELTAFKVSTGIKMYEE---DKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAG---------NIVTKNRNNLAPTTVELLVLLRHSWKIVEEW 293          
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.560e-13
Identity = 52/152 (34.21%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  529 VETRKMLEDHDSITSSLVIPFLHDLLGDLRTAVKDFEGKESRDSSSTSSDTLFNMRVCCQQMLGNFESWWGDG-NVVTPREGRGDAPVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAMT-TLEARRAAGEDTTTPEXXXRAVA 978
            V+ +++++D   +T SLV+PF++DL   L  A+ D   +   DS +  +     +  C + +  ++   WGDG N++  +EG    P GF    VLATALDPRTK+ YG+ E+E   VW +V  EA+   +E R A     T+ +    A A
Sbjct:  188 VDNKRVIQD--VVTGSLVVPFIYDLRNSLEDAIDDLV-ELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETRNAENSQRTSSQQGPEAAA 336          
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.750e-8
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  700 CCQQMLGNFESWWGDG-NVVTPREGRGDAPVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAMTTL--EARRAAGEDTTT 951
            C + +  +F + WGDG N++  +EG    P GF   QVLATALDPRTK+L+G+ E+E   VW +V  E    +  E R A     T+
Sbjct:  165 CIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKIAVETRNAENSQRTS 251          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9371.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LCS5_ECTSI5.740e-5933.54Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE3.180e-5030.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE9.120e-3733.78Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE5.800e-3032.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KVI1_9PHAE2.430e-2631.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI1_9PHAE2.560e-2644.75Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE6.560e-1334.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE5_9PHAE2.750e-841.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9371contigD-mesarthrocarpus_Contig9371:2903..4897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size1458
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.25e-60
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size1428
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791091.0721624-CDS-D-mesarthrocarpus_Contig9371:2902..32761680791091.0721624-CDS-D-mesarthrocarpus_Contig9371:2902..3276Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9371 2903..3276 -
1680791091.0848124-CDS-D-mesarthrocarpus_Contig9371:3627..40201680791091.0848124-CDS-D-mesarthrocarpus_Contig9371:3627..4020Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9371 3628..4020 -
1680791091.098568-CDS-D-mesarthrocarpus_Contig9371:4116..44381680791091.098568-CDS-D-mesarthrocarpus_Contig9371:4116..4438Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9371 4117..4438 -
1680791091.1146686-CDS-D-mesarthrocarpus_Contig9371:4528..48671680791091.1146686-CDS-D-mesarthrocarpus_Contig9371:4528..4867Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9371 4529..4867 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791091.1310976-UTR-D-mesarthrocarpus_Contig9371:4867..48971680791091.1310976-UTR-D-mesarthrocarpus_Contig9371:4867..4897Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9371 4868..4897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9371.4.1prot_D-mesarthrocarpus_Contig9371.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9371 2903..4867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9371.4.1

>prot_D-mesarthrocarpus_Contig9371.4.1 ID=prot_D-mesarthrocarpus_Contig9371.4.1|Name=mRNA_D-mesarthrocarpus_Contig9371.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=476bp
MVEDTAGARALQRPVQAFVSSCHEPTVCRAGRLLTERAFALEHVGCASRK
LEQTLAVGLGILGGEAAGVQEAVAAARRLVCRYAPQSRAASRLRECCILK
GIVLEESLWRLGRKDCSWWSVYTVVEGLLRMREAVRLHEHVDGLAPAATE
EHWTILSMLLPKLDPLVETRKMLEDHDSITSSLVIPFLHDLLGDLRTAVK
DFEGKESRDSSSTSSDTLFNMRVCCQQMLGNFESWWGDGNVVTPREGRGD
APVGFSRGQVLATALDPRTKVLYGIPEEEHPAVWDMVVMEAMTTLEARRA
AGEDTTTPEPPPRAVAPGAGAGLGWGARGAVGIGAGTGARAGAAVGVGAG
AEGDESAMVRSRLRQSAQLELSAFREAPGMPMYDHIAGDRGGGRVKLDPL
QWWARRVKEFPILARVARRVLATPATQAQAEGAFLSGSGPDGAPLSPEQL
PGAAMNLPHTDLLVYLRNTWPTVDKW
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9371:2903..4897-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9371.4.1 ID=mRNA_D-mesarthrocarpus_Contig9371.4.1|Name=mRNA_D-mesarthrocarpus_Contig9371.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1995bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9371:2903..4897- (Discosporangium mesarthrocarpum MT17_79)
GGGGTTGGAGCTGGGGACCTGCTTGCGCAGATGGTGGAGGATACTGCTGG GGCCCGGGCTCTCCAGAGACCTGTGCAGGCATTTGTGTCGAGCTGCCATG AGCCGACGGTGTGCAGAGCAGGCCGGCTGCTGACGGAACGGGCGTTTGCC CTGGAGCACGTCGGGTGCGCCAGCCGGAAGCTAGAACAGACACTGGCGGT CGGCCTGGGCATCCTGGGCGGGGAGGCAGCCGGAGTCCAGGAGGCGGTGG CAGCGGCCCGGAGGCTGGTGTGCCGCTACGCGCCTCAGAGCCGAGCTGCT AGCAGGCTGCGGGAGTGCTGCATTCTTAAGGGCATAGTACTGGAGGAGTC CCTGTGGCGCCTGGGGCGGGTCTGGGCCTCCGAGAACTCAGACCGCGAGA TCTATGGGGAACGTAGAGGGCAGGGCAAGAGAGACTTTATGGGAGAGGAA GCCTTTGAGAAAGACTGCTCATGGTGGTCAGTGTACACCGTGGTGGAGGG TTTGCTGAGGATGAGGGAGGCAGTGCGACTGCATGAGCATGTGGACGGGC TGGCCCCGGCTGCTACAGAGGAGCACTGGACGATCCTGAGCATGCTCCTG CCCAAGCTAGACCCCCTGGTGGAGACACGGAAGATGCTGGAGGACCATGA CTCCATCACTAGCAGCCTGGTCATCCCCTTCCTGCACGACCTGCTGGGGG ACCTTAGGACTGCGGTGAAGGACTTTGAGGGGAAGGAAAGCAGAGACTCG AGCAGCACCAGCAGCGACACCCTCTTCAACAGTGAAGCTGCCAGTGGCAG CAAGAATGGCGGCGGTGGGGGCAGTGGGGGTGGCCTGGGTGCCAGGTTGG GCGAATTGGAGGGTGCCAGGCGCACAGTGAGGGTATGCTGTCAGCAGATG CTGGGCAACTTTGAGAGCTGGTGGGGGGACGGGAACGTAGTCACCCCACG GGAGGGCCGGGGAGATGCCCCTGTGGGGTTCTCAAGAGGGCAGGTGCTGG CAACAGCTCTGGATCCCAGGACCAAGGTGCTCTACGGCATACCTGAGGAG GAACACCCTGCGGTGTGGGACATGGTGGTCATGGAGGCAATGACAACCCT TGAGGCAAGGAGAGCTGCTGGGGAGGATACAACCACTCCAGAGCCACCAC CAAGAGCAGTGGCCCCTGGGGCAGGAGCAGGGCTGGGTTGGGGGGCAAGG GGGGCAGTAGGAATCGGGGCAGGGACAGGGGCCAGGGCTGGGGCCGCGGT CGGTGTTGGGGCTGGGGCCGGTGCTGGGGCTGGGGCTGGAGCTGGGGTTG GGGCTGGAGCTGGGGTTGGGGCTGGGGCTGAGGCTGGGGCTGGGGCTGGG GCTGGGGCTGGGGCTGGGGTCCCCTCGTCTCCCTTTTCTGGTAGCCCCTC TCTGGGCGGGGTGGTCTCGGACACAGCTGCTACAGTGCCAGTGGATGTGG CCATGGAAGGGTCATCATCTCTGGGGGTCGTCACTGTGGCGGGGGGTGCT GGGGGGCTGGTATCACCATCACCACCGGGGGCAGAGGTGGTCGACCGACC GGCCAAGAGGCTGCGGGGCTTCATGGCGATGAGCCAGGCCCTCAAGGGGA GCCAGCACCCGCGAACTGAAGAGGGGGATGAAAGTGCAATGGTGAGGTCA CGGCTCCGGCAGAGCGCCCAGCTTGAGCTGTCAGCCTTCCGGGAAGCCCC TGGCATGCCCATGTACGACCACATAGCAGGAGATCGGGGTGGGGGGCGGG TCAAGCTGGACCCGCTCCAATGGTGGGCGAGGCGGGTCAAGGAGTTCCCG ATCCTTGCAAGGGTTGCCCGCCGAGTGCTGGCAACGCCTGCGACCCAGGC GCAGGCTGAGGGGGCATTCCTGAGCGGCTCCGGGCCAGATGGGGCTCCAC TCTCACCAGAGCAGCTGCCTGGAGCCGCCATGAACCTGCCCCACACAGAT CTCCTGGTGTATCTGAGGAATACCTGGCCCACAGTAGACAAGTGG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9371:2903..4897-

>mRNA_D-mesarthrocarpus_Contig9371.4.1 ID=mRNA_D-mesarthrocarpus_Contig9371.4.1|Name=mRNA_D-mesarthrocarpus_Contig9371.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1428bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9371:2903..4897- (Discosporangium mesarthrocarpum MT17_79)
ATGGTGGAGGATACTGCTGGGGCCCGGGCTCTCCAGAGACCTGTGCAGGC
ATTTGTGTCGAGCTGCCATGAGCCGACGGTGTGCAGAGCAGGCCGGCTGC
TGACGGAACGGGCGTTTGCCCTGGAGCACGTCGGGTGCGCCAGCCGGAAG
CTAGAACAGACACTGGCGGTCGGCCTGGGCATCCTGGGCGGGGAGGCAGC
CGGAGTCCAGGAGGCGGTGGCAGCGGCCCGGAGGCTGGTGTGCCGCTACG
CGCCTCAGAGCCGAGCTGCTAGCAGGCTGCGGGAGTGCTGCATTCTTAAG
GGCATAGTACTGGAGGAGTCCCTGTGGCGCCTGGGGCGGAAAGACTGCTC
ATGGTGGTCAGTGTACACCGTGGTGGAGGGTTTGCTGAGGATGAGGGAGG
CAGTGCGACTGCATGAGCATGTGGACGGGCTGGCCCCGGCTGCTACAGAG
GAGCACTGGACGATCCTGAGCATGCTCCTGCCCAAGCTAGACCCCCTGGT
GGAGACACGGAAGATGCTGGAGGACCATGACTCCATCACTAGCAGCCTGG
TCATCCCCTTCCTGCACGACCTGCTGGGGGACCTTAGGACTGCGGTGAAG
GACTTTGAGGGGAAGGAAAGCAGAGACTCGAGCAGCACCAGCAGCGACAC
CCTCTTCAACATGAGGGTATGCTGTCAGCAGATGCTGGGCAACTTTGAGA
GCTGGTGGGGGGACGGGAACGTAGTCACCCCACGGGAGGGCCGGGGAGAT
GCCCCTGTGGGGTTCTCAAGAGGGCAGGTGCTGGCAACAGCTCTGGATCC
CAGGACCAAGGTGCTCTACGGCATACCTGAGGAGGAACACCCTGCGGTGT
GGGACATGGTGGTCATGGAGGCAATGACAACCCTTGAGGCAAGGAGAGCT
GCTGGGGAGGATACAACCACTCCAGAGCCACCACCAAGAGCAGTGGCCCC
TGGGGCAGGAGCAGGGCTGGGTTGGGGGGCAAGGGGGGCAGTAGGAATCG
GGGCAGGGACAGGGGCCAGGGCTGGGGCCGCGGTCGGTGTTGGGGCTGGG
GCCGAGGGGGATGAAAGTGCAATGGTGAGGTCACGGCTCCGGCAGAGCGC
CCAGCTTGAGCTGTCAGCCTTCCGGGAAGCCCCTGGCATGCCCATGTACG
ACCACATAGCAGGAGATCGGGGTGGGGGGCGGGTCAAGCTGGACCCGCTC
CAATGGTGGGCGAGGCGGGTCAAGGAGTTCCCGATCCTTGCAAGGGTTGC
CCGCCGAGTGCTGGCAACGCCTGCGACCCAGGCGCAGGCTGAGGGGGCAT
TCCTGAGCGGCTCCGGGCCAGATGGGGCTCCACTCTCACCAGAGCAGCTG
CCTGGAGCCGCCATGAACCTGCCCCACACAGATCTCCTGGTGTATCTGAG
GAATACCTGGCCCACAGTAGACAAGTGG
back to top