mRNA_D-mesarthrocarpus_Contig937.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig937.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig937.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: D7G8W1_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W1_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.430e-67
Identity = 110/144 (76.39%), Postives = 125/144 (86.81%), Query Frame = 1
Query:    1 MAVSPALAEETANADEVPELKGSVPVDAFETMDIRVGRIVKAEQVPDPDHGNKPSRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGSAVSGL 432
            MAVS A AEE +N ++VP+LK  V +  FE +DIRVGRIV AE +PDPDHGNKPSRKYLSLVVDLG+EKR +VSA+R IVDVEDAIGKAVL+ AN++EETILG PS G++LS SNFSKEPMPRTLRTVLL GGGVPPGSAVSGL
Sbjct:    3 MAVSHAAAEEISNMEDVPKLKDPVAIADFEALDIRVGRIVLAELIPDPDHGNKPSRKYLSLVVDLGNEKRRVVSAVRSIVDVEDAIGKAVLMAANVEEETILGLPSRGKLLSGSNFSKEPMPRTLRTVLLGGGGVPPGSAVSGL 146          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A0A836CNH0_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 4.420e-60
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 1
Query:    1 MAVSPALAEETANADEVPELKGSVPVDAFETMDIRVGRIVKAEQVPDPDHGNKPSRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGSAVSGL 432
            +AVS AL EE  ++ +VP L+  V V ++E +DIRVGRIVKAE VPDPDHGNKPSRKYLSLVV LG+E R I+S +RP+ DVE+AIGK+VLVVAN +EE ILGRPS GR+L A+N+SK PMPRTLRTVLL GG VPPGS V+GL
Sbjct:   16 VAVSTALGEEATDSADVPALQPDVSVASYEALDIRVGRIVKAETVPDPDHGNKPSRKYLSLVVALGNEFRSIISGVRPVFDVEEAIGKSVLVVANTEEEVILGRPSRGRLLVAANYSKAPMPRTLRTVLLGGGPVPPGSQVTGL 159          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A0A7S0MGA1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGA1_9CRYP)

HSP 1 Score: 144 bits (363), Expect = 8.630e-41
Identity = 72/134 (53.73%), Postives = 103/134 (76.87%), Query Frame = 1
Query:   25 EETANADEVPELKGSVPVDAFETMDIRVGRIVKAEQVPDPDHGNKPSRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGSAVS 426
            E+  +  ++P +K  V     +++DIRVGRI +A+ +PDP+H  KPSRKYL L+V++G+EKR IV+A R I DVE++IG++VLV  N++++T+LG  S GR+LSASN ++ P+PRTLRTVL  GGG+PPGS VS
Sbjct:   71 EDNLDPSDIPPVKDEVSNALLDSLDIRVGRIERADLIPDPEHEMKPSRKYLRLIVNIGTEKRTIVAASRGIYDVEESIGRSVLVACNVEQQTVLGVASHGRLLSASNPTRRPIPRTLRTVLSKGGGLPPGSPVS 204          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A0A2R6X722_MARPO (tRNA-binding domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X722_MARPO)

HSP 1 Score: 102 bits (255), Expect = 1.970e-24
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   52 PELKGSVPVDAFETMDIRVGRIVKAEQVPDPDHGNKP-----SRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGSAVSG 429
            P +K  V V  FE++DIRVG I  A+ V DP+   K      SRK+L L VD+G E+R +VS  + ++DVEDA+GK VL VAN+    +LG  S G +L+  N+   PMPR+ + +L   G +PPGS V G
Sbjct:   82 PAVKPEVDVSTFESLDIRVGLITDAKAVADPEMSAKRGVPTMSRKHLQLTVDIGCEERIVVSECKYVMDVEDAVGKKVLFVANVPPCEVLGITSHGMLLTGFNYDPTPMPRSFKVILPGLGRLPPGSEVKG 212          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A0A176WMH6_MARPO (tRNA-binding domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WMH6_MARPO)

HSP 1 Score: 100 bits (250), Expect = 1.850e-22
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   52 PELKGSVPVDAFETMDIRVGRIVKAEQVPDPDHGNKP-----SRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGSAV 423
            P +K  V V  FE++DIRVG I  A+ V DP+   K      SRK+L L VD+G E+R +VS  + ++DVEDA+GK VL VAN+    +LG  S G +L+  N+   PMPR+ + +L   G +PPGS V
Sbjct:   82 PAVKPEVDVSTFESLDIRVGLITDAKAVADPEMSAKRGVPTMSRKHLQLTVDIGCEERIVVSECKYVMDVEDAVGKKVLFVANVPPCEVLGITSHGMLLTGFNYDPTPMPRSFKVILPGLGRLPPGSEV 210          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A0A2K1L6P8_PHYPA (tRNA-binding domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L6P8_PHYPA)

HSP 1 Score: 97.8 bits (242), Expect = 1.940e-22
Identity = 59/139 (42.45%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   28 ETANADEVPELKGSVPVDAFETMDIRVGRIVKAEQVPDPD---HGNKP--SRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGSAVSG 429
            ET +    P +K  V    FE++D+RVG I  A+ V D +      KP  SRK+L L VD+G E+R IVS  + ++DVEDA+GK VL+VAN+    + G  S G +L+  N+   PMPR+ + +L   G +PPGS V G
Sbjct:   81 ETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGSQVKG 219          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A0A1Y1HKH6_KLENI (tRNA-binding domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HKH6_KLENI)

HSP 1 Score: 95.1 bits (235), Expect = 7.560e-22
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   52 PELKGSVPVDAFETMDIRVGRIVKAEQVPDPDHGNKP-----SRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGSAV 423
            P++K  +    F  +DIRVG +  A+ VPD +   K      SRK+L L VD+GSE R +VS  + ++DVEDA+GK VL VANL    + G  S G +L   N+   PMPR+ + +L   G +PPGS +
Sbjct:   43 PKIKEQIGFSDFAKVDIRVGLVTDAKAVPDKEMTEKRGKPTMSRKFLQLKVDIGSETRTVVSQCKYVMDVEDAVGKKVLFVANLPPTEVEGITSHGLVLQGLNYDPTPMPRSFKVILPGLGKLPPGSPI 171          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A9TWI9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TWI9_PHYPA)

HSP 1 Score: 94.7 bits (234), Expect = 2.800e-21
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   28 ETANADEVPELKGSVPVDAFETMDIRVGRIVKAEQVPDPD---HGNKP--SRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGS 417
            ET +    P +K  V    FE++D+RVG I  A+ V D +      KP  SRK+L L VD+G E+R IVS  + ++DVEDA+GK VL+VAN+    + G  S G +L+  N+   PMPR+ + +L   G +PPGS
Sbjct:   53 ETTDRVACPAVKPEVDPSIFESVDVRVGLITDAKPVQDAEMTAKRGKPTLSRKFLQLTVDIGCEQRTIVSECKYVMDVEDAVGKKVLIVANVPPTEVNGIKSHGVVLTGFNYDPTPMPRSFKVILPGLGRLPPGS 187          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A0A0V8RUX0_PYROC (Methionine--tRNA ligase n=1 Tax=Pyrodictium occultum TaxID=2309 RepID=A0A0V8RUX0_PYROC)

HSP 1 Score: 71.6 bits (174), Expect = 2.030e-13
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   49 VPELKGSVPVDAFETMDIRVGRIVKAEQVPDPDHGNKPSRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSA 339
            +P  +G + +D F  +D+RVG++V+AE++P          + L L+VDLGSEKR IVS I      ED +GK V+VV NL  + I G  S G IL+A
Sbjct:    1 MPGEEGYITIDEFSRVDLRVGKVVEAERIP--------GTRLLKLIVDLGSEKRQIVSGIAEYYKPEDLLGKKVVVVVNLKPKKIRGYLSEGMILAA 89          
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Match: A0A0P0N3E0_9CREN (Methionine--tRNA ligase subunit beta n=1 Tax=Pyrodictium delaneyi TaxID=1273541 RepID=A0A0P0N3E0_9CREN)

HSP 1 Score: 71.2 bits (173), Expect = 2.860e-13
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   61 KGSVPVDAFETMDIRVGRIVKAEQVPDPDHGNKPSRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEETILGRPSCGRILSA 339
            K  + +D F  +D+RVG++V+AE++P          + L LVVDLGSEKR I+S I      ED +GK V+VVANL  + I G  S G IL+A
Sbjct:    5 KAYITIDEFARIDLRVGKVVEAERIP--------GTRLLKLVVDLGSEKRQIISGIAEYYSPEDLLGKKVVVVANLKPKKIRGYLSEGMILAA 89          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig937.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W1_ECTSI1.430e-6776.39tRNA-binding domain-containing protein n=2 Tax=Ect... [more]
A0A836CNH0_9STRA4.420e-6069.44tRNA-binding domain-containing protein n=1 Tax=Tri... [more]
A0A7S0MGA1_9CRYP8.630e-4153.73Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A2R6X722_MARPO1.970e-2445.04tRNA-binding domain-containing protein n=1 Tax=Mar... [more]
A0A176WMH6_MARPO1.850e-2244.96tRNA-binding domain-containing protein n=1 Tax=Mar... [more]
A0A2K1L6P8_PHYPA1.940e-2242.45tRNA-binding domain-containing protein n=1 Tax=Phy... [more]
A0A1Y1HKH6_KLENI7.560e-2241.86tRNA-binding domain-containing protein n=1 Tax=Kle... [more]
A9TWI9_PHYPA2.800e-2142.22Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A0V8RUX0_PYROC2.030e-1343.30Methionine--tRNA ligase n=1 Tax=Pyrodictium occult... [more]
A0A0P0N3E0_9CREN2.860e-1345.16Methionine--tRNA ligase subunit beta n=1 Tax=Pyrod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig937contigD-mesarthrocarpus_Contig937:11636..13257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8W1
PFAMstRNA_bind
Model size435
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.34e-68
EggNOG OGs2D3XM@1|root,2ST4W@2759|Eukaryota
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-15_004450.1
DescriptionPutative tRNA binding domain
Cds size435
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791090.544456-CDS-D-mesarthrocarpus_Contig937:11635..118061680791090.544456-CDS-D-mesarthrocarpus_Contig937:11635..11806Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig937 11636..11806 -
1680791090.5577552-CDS-D-mesarthrocarpus_Contig937:12244..123981680791090.5577552-CDS-D-mesarthrocarpus_Contig937:12244..12398Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig937 12245..12398 -
1680791090.5712352-CDS-D-mesarthrocarpus_Contig937:12890..129521680791090.5712352-CDS-D-mesarthrocarpus_Contig937:12890..12952Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig937 12891..12952 -
1680791090.5861747-CDS-D-mesarthrocarpus_Contig937:13209..132571680791090.5861747-CDS-D-mesarthrocarpus_Contig937:13209..13257Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig937 13210..13257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig937.3.1prot_D-mesarthrocarpus_Contig937.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig937 11636..13257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig937.3.1

>prot_D-mesarthrocarpus_Contig937.3.1 ID=prot_D-mesarthrocarpus_Contig937.3.1|Name=mRNA_D-mesarthrocarpus_Contig937.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=145bp
MAVSPALAEETANADEVPELKGSVPVDAFETMDIRVGRIVKAEQVPDPDH
GNKPSRKYLSLVVDLGSEKRGIVSAIRPIVDVEDAIGKAVLVVANLDEET
ILGRPSCGRILSASNFSKEPMPRTLRTVLLAGGGVPPGSAVSGL*
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mRNA from alignment at D-mesarthrocarpus_Contig937:11636..13257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig937.3.1 ID=mRNA_D-mesarthrocarpus_Contig937.3.1|Name=mRNA_D-mesarthrocarpus_Contig937.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1622bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig937:11636..13257- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTGTATCGCCAGCTCTTGCCGAGGAGACAGCGAACGCCGATGAGGT AATGGTGCATAGCTGACCTCCTATATTCGAATTTGCACGGATATGCATAG AATGGAGGATATGTTCTCTTGTATGCGAGTTTAAGCTCGCCTCTTCATAG ATTGTTGTGATTTTACTCGATGACTGTGTCTCTCAATTATGGCATCTCAA CAAGAACCAGTCAAATGTACGCGCATCTACCGGTATGTTCACAAGAATGC GTTTAACTAACTGCGCCTGTGACCCCACACTTTTTTTGTTGCATCCTCCT CTTAGGTCCCGGAGCTGAAGGGAAGTGTACCTGTGGACGCGTTTGAGACT ATGGATATTCGAGTTGGGTGAGGCTACTTTTTTTCCCATCCTCAAGGGCG TGGTGTTCGAGTTGGTGTACGAAATGCCTTCTTGTCATGTACGGAGAAAA ACTTGCAGTCTTTCATTCCTTTTGCGATAGGTTAGAAGCAGGAGACGGCT GAAGATGACTTTATTTGAAGAAGCAATCCTCTCATGTGAAACTCTTGGAT GCACATCACACAGCTTGAAAGATACTTCAAGCATTGCACTTATCGAAGCA TTGCACGTATCCAAGCAATGGACACATTGCCACTGTGAAGATATCTGACA TTCTGTGGAGGGAATATTCAAACGCAATGCAATCGCACCTAAGTAAAGTC TTTTCAGCACACGAATCAAACAAGAGCCTAGCCAACCAACCTTAAACCCT TCAGCATACCTTGTCATCCCGTACCCTTACCGTCCCTCATTGCTACCTCT GGAACGGGATGTGTGTGTGGGGTGGCCAAAACGGTGCCGCGGGTACACTG TTACTACAGGCGAATTGTAAAAGCAGAGCAAGTGCCTGACCCAGACCACG GGAACAAGCCGAGTCGCAAGTACCTGTCCCTGGTAGTGGATCTGGGAAGT GAAAAAAGGGGCATTGTGAGCGCCATCCGTCCCATTGTCGACGTGGAAGA TGCTATCGGAAAGGTGCATGGAACAAATGGGAAAATGTATTGTACGTAAA ATGTGCACACGTATGTCCTATGGTCAGCTCCCAGCGAATGGGGGTGCTGG GCAGCTTCTCATCCTCCAGCGGAAAGGACACACCTTCCACGGCTCACTGT GTGCTCGTTTGTGTTTGCTGGGCCTTCTTTCAATTGCACTTTCCTTCCGT ACGAGAAAAAACTGAGTCCCCGGTGAGGACCCTGCAGGTGGCAGAGGGGT TGTTTCCACCACTATGGGGAGCTGACAGTCGGTACCTTCACCCGCCGTTC GAAGCCCATGGCGCTGTGTAGGGTGCTCTTCTGCCCTTTCCCCGACGGCT GTGACCCGACTCACCACCCTTTCCCCCCATCTCAGCCCGTGCCGCTCCTG CCCGGCGTGTTGTTGTGTTTTTTTATGCCTGACTGACCCCACGCCCTGCA GGCAGTGCTAGTGGTGGCCAACCTAGACGAGGAGACCATCCTAGGGCGCC CCAGCTGTGGGCGTATCCTGTCAGCCTCGAACTTTAGCAAGGAGCCCATG CCCCGAACCCTTCGCACGGTGTTGCTGGCTGGAGGGGGGGTCCCGCCAGG AAGTGCAGTTTCAGGCCTCTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig937:11636..13257-

>mRNA_D-mesarthrocarpus_Contig937.3.1 ID=mRNA_D-mesarthrocarpus_Contig937.3.1|Name=mRNA_D-mesarthrocarpus_Contig937.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=435bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig937:11636..13257- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTGTATCGCCAGCTCTTGCCGAGGAGACAGCGAACGCCGATGAGGT
CCCGGAGCTGAAGGGAAGTGTACCTGTGGACGCGTTTGAGACTATGGATA
TTCGAGTTGGGCGAATTGTAAAAGCAGAGCAAGTGCCTGACCCAGACCAC
GGGAACAAGCCGAGTCGCAAGTACCTGTCCCTGGTAGTGGATCTGGGAAG
TGAAAAAAGGGGCATTGTGAGCGCCATCCGTCCCATTGTCGACGTGGAAG
ATGCTATCGGAAAGGCAGTGCTAGTGGTGGCCAACCTAGACGAGGAGACC
ATCCTAGGGCGCCCCAGCTGTGGGCGTATCCTGTCAGCCTCGAACTTTAG
CAAGGAGCCCATGCCCCGAACCCTTCGCACGGTGTTGCTGGCTGGAGGGG
GGGTCCCGCCAGGAAGTGCAGTTTCAGGCCTCTGA
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