mRNA_D-mesarthrocarpus_Contig937.10.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig937.10.1
Unique NamemRNA_D-mesarthrocarpus_Contig937.10.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: A0A293MAZ4_ORNER (WD-repeat protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MAZ4_ORNER)

HSP 1 Score: 97.4 bits (241), Expect = 8.700e-24
Identity = 50/110 (45.45%), Postives = 62/110 (56.36%), Query Frame = 1 
Query:   49 MPVRSLCFSADGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSD-----------------------RTVKIWDMAAKECVHNFDSVHANQ 309
            MP+RSL FS D  +L TASDD  + VYDV +  LV + +GH SWVL V  C D  HFA+  SD                       +TVK+WD+AAKECVH F S H++Q
Sbjct:    1 MPIRSLTFSPDSQMLVTASDDCHIKVYDVQHADLVTTLSGHGSWVLHVSFCSDNAHFASSSSDLRLALMENTSPVVLSMESSISSDKTVKVWDLAAKECVHTF-SEHSDQ 109
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: A0A5K0YPK7_9MAGN (ANAPC4_WD40 domain-containing protein (Fragment) n=3 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0YPK7_9MAGN)

HSP 1 Score: 99.0 bits (245), Expect = 1.210e-23
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:   19 KLHQKLEGHAMPVRSLCFS-ADGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVHANQ 309
            K    LEGH MPVRSL FS  D  +LF+ASDDM V++YD    SLV++ +GH+SWVL+VD  PD    ATG SDRTV++WD+  +  V    + H +Q
Sbjct:   76 KFLHHLEGHFMPVRSLVFSPVDPRVLFSASDDMHVHMYDADGKSLVSAMSGHSSWVLTVDASPDGAAVATGSSDRTVRLWDLTMRASVQTXXN-HTDQ 172
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: W1P8E5_AMBTC (ANAPC4_WD40 domain-containing protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1P8E5_AMBTC)

HSP 1 Score: 98.6 bits (244), Expect = 1.970e-23
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:   19 KLHQKLEGHAMPVRSLCFS-ADGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVHANQ 309
            K    LEGH MP+RSL FS AD  +LF+ASDD  +++YD    +LVAS +GH SWVLSVD  PD    A+G SDRTV++WD++ +  V    S H +Q
Sbjct:   82 KFLHHLEGHFMPIRSLVFSPADPRILFSASDDGHIHMYDSDGKTLVASMSGHASWVLSVDASPDGVAVASGSSDRTVRLWDLSMRAAVQTMSS-HGDQ 178
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: A0A835UP85_VANPL (ANAPC4_WD40 domain-containing protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UP85_VANPL)

HSP 1 Score: 100 bits (250), Expect = 1.070e-22
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:   22 LHQKLEGHAMPVRSLCFSA-DGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVHANQ 309
            LHQ LEGH MPVRSL +S  D  +LF+A DD  V++YD    +LVAS +GH SWVLSVD  PD    ATG SDRTV++WD++ +  V    S HA+Q
Sbjct:  176 LHQ-LEGHFMPVRSLVYSPLDPRVLFSACDDTHVHMYDAEGKNLVASMSGHASWVLSVDASPDGAAIATGSSDRTVRLWDLSMRASVQTMTS-HADQ 270
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: A0A2I0WT27_9ASPA (Dynein assembly factor with WDR repeat domains 1 n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WT27_9ASPA)

HSP 1 Score: 99.0 bits (245), Expect = 1.090e-22
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    7 YQGQKLHQKLEGHAMPVRSLCFSA-DGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVHANQ 309
            ++G+ LH  L+GH MPVRSL +S  D  +LF+A DD  V++YD    +LVAS +GH SWVLSVD  PD    ATG SDRTV++WD+  +  V    S H++Q
Sbjct:  189 HRGKFLHH-LDGHFMPVRSLVYSPLDSRVLFSACDDTHVHMYDAEGKNLVASMSGHASWVLSVDASPDGAAIATGSSDRTVRLWDLTMRASVQTMTS-HSDQ 288
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: A0A1Q3BY79_CEPFO (WD40 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BY79_CEPFO)

HSP 1 Score: 98.6 bits (244), Expect = 1.440e-22
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:   13 GQKLHQKLEGHAMPVRSLCFS-ADGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVHANQ 309
            G+ LH  LEGH MPVRSL +S  D  +LF+ASDD  V++YD    SL+ + +GH SWVLSVD  PD    ATG SD+TV++WD+  ++ V    + H++Q
Sbjct:  190 GKFLHH-LEGHFMPVRSLVYSPTDSRVLFSASDDCHVHMYDAEGKSLIGAMSGHASWVLSVDASPDGLAIATGSSDKTVRLWDLKMRQAVQTMSN-HSDQ 287
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: B9HDW2_POPTR (Uncharacterized protein n=10 Tax=Malpighiales TaxID=3646 RepID=B9HDW2_POPTR)

HSP 1 Score: 98.6 bits (244), Expect = 1.500e-22
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   19 KLHQKLEGHAMPVRSLCFS-ADGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVHANQ 309
            K    LEGH MPVRSL +S AD  +LF+ASDD  V++YD    S++A+ +GH SWVLSVD  PD    ATG SD+TV++WD+  +  V    + H +Q
Sbjct:  191 KFLHHLEGHFMPVRSLVYSPADPRVLFSASDDAHVHMYDAEGKSMIAALSGHASWVLSVDASPDGAAIATGSSDKTVRLWDLGMRAAVQTMSN-HVDQ 287
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: A0A7J6H9G7_CANSA (ANAPC4_WD40 domain-containing protein n=6 Tax=Rosales TaxID=3744 RepID=A0A7J6H9G7_CANSA)

HSP 1 Score: 97.8 bits (242), Expect = 2.770e-22
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   19 KLHQKLEGHAMPVRSLCFS-ADGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVHANQ 309
            K    LEGH MPVRSL +S  +  LLF+ASDD  V++YD    +LV + +GH+SWVLSVD  PD    ATG SDRTV++WD+  +  V    + HA+Q
Sbjct:  191 KFLHHLEGHFMPVRSLAYSPTEPRLLFSASDDAHVHMYDAEGKTLVGAMSGHSSWVLSVDVSPDGTAIATGSSDRTVRLWDIGMRAAVQTMSN-HADQ 287
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: A0A6A1VB21_9ROSI (WD repeat-containing protein 61 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VB21_9ROSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.240e-22
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:   19 KLHQKLEGHAMPVRSLCFSA-DGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDS 294
            K    LEGH MPVRSL +S  +  LLF+ASDDM V++YD    SLV + TGH SWVLSVD  PD    ATG SD TV++WD++ +  V    +
Sbjct:  135 KFLHHLEGHFMPVRSLVYSPIEPRLLFSASDDMHVHMYDAEGKSLVGAMTGHGSWVLSVDVSPDGAAIATGSSDATVRLWDISMRAAVQTMSN 227
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BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Match: A0A6P4A2U7_ZIZJJ (WD repeat-containing protein VIP3 n=2 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P4A2U7_ZIZJJ)

HSP 1 Score: 97.4 bits (241), Expect = 3.880e-22
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:   19 KLHQKLEGHAMPVRSLCFS-ADGTLLFTASDDMRVNVYDVANTSLVASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVHANQ 309
            K    LEGH MPVRSL +S A+  LLF+ASDD  V++YD    +L+ + +GH SWVLSVD  PD    ATG SDRTV++WD++ +  V    + H +Q
Sbjct:  191 KFLHHLEGHYMPVRSLVYSPAEPRLLFSASDDTHVHMYDAEGKTLIGAMSGHASWVLSVDVSPDGAAIATGSSDRTVRLWDLSMRAAVQTMSN-HTDQ 287
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig937.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293MAZ4_ORNER8.700e-2445.45WD-repeat protein (Fragment) n=1 Tax=Ornithodoros ... [more]
A0A5K0YPK7_9MAGN1.210e-2351.02ANAPC4_WD40 domain-containing protein (Fragment) n... [more]
W1P8E5_AMBTC1.970e-2351.02ANAPC4_WD40 domain-containing protein n=2 Tax=Ambo... [more]
A0A835UP85_VANPL1.070e-2254.64ANAPC4_WD40 domain-containing protein n=2 Tax=Vani... [more]
A0A2I0WT27_9ASPA1.090e-2250.00Dynein assembly factor with WDR repeat domains 1 n... [more]
A0A1Q3BY79_CEPFO1.440e-2249.00WD40 domain-containing protein n=1 Tax=Cephalotus ... [more]
B9HDW2_POPTR1.500e-2248.98Uncharacterized protein n=10 Tax=Malpighiales TaxI... [more]
A0A7J6H9G7_CANSA2.770e-2250.00ANAPC4_WD40 domain-containing protein n=6 Tax=Rosa... [more]
A0A6A1VB21_9ROSI3.240e-2251.61WD repeat-containing protein 61 n=1 Tax=Morella ru... [more]
A0A6P4A2U7_ZIZJJ3.880e-2248.98WD repeat-containing protein VIP3 n=2 Tax=Rhamnace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig937contigD-mesarthrocarpus_Contig937:23531..24480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog13333.ERN03255
PFAMsWD40
Model size321
Max annot lvl35493|Streptophyta
KEGG koko:K12602
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000428,GO:0000785,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0008213,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010452,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016441,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016591,GO:0016593,GO:0018022,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031461,GO:0031974,GO:0031981,GO:0032259,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034968,GO:0035327,GO:0036211,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048580,GO:0048581,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0055029,GO:0055087,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:1901564,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000241,GO:2000242,GO:2001141
Exons3
Evalue3.23e-24
EggNOG OGsKOG4155@1|root,KOG4155@2759|Eukaryota,37HG0@33090|Viridiplantae,3GH8D@35493|Streptophyta
DescriptionWD repeat-containing protein
Cds size321
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791090.7021232-CDS-D-mesarthrocarpus_Contig937:23530..236241680791090.7021232-CDS-D-mesarthrocarpus_Contig937:23530..23624Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig937 23531..23624 -
1680791090.7186842-CDS-D-mesarthrocarpus_Contig937:24032..241251680791090.7186842-CDS-D-mesarthrocarpus_Contig937:24032..24125Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig937 24033..24125 -
1680791090.7301137-CDS-D-mesarthrocarpus_Contig937:24346..244801680791090.7301137-CDS-D-mesarthrocarpus_Contig937:24346..24480Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig937 24347..24480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig937.10.1prot_D-mesarthrocarpus_Contig937.10.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig937 23531..24480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig937.10.1

>prot_D-mesarthrocarpus_Contig937.10.1 ID=prot_D-mesarthrocarpus_Contig937.10.1|Name=mRNA_D-mesarthrocarpus_Contig937.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=107bp
MRYQGQKLHQKLEGHAMPVRSLCFSADGTLLFTASDDMRVNVYDVANTSL
VASFTGHTSWVLSVDCCPDKRHFATGGSDRTVKIWDMAAKECVHNFDSVH
ANQARYN
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mRNA from alignment at D-mesarthrocarpus_Contig937:23531..24480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig937.10.1 ID=mRNA_D-mesarthrocarpus_Contig937.10.1|Name=mRNA_D-mesarthrocarpus_Contig937.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=950bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig937:23531..24480- (Discosporangium mesarthrocarpum MT17_79)
ATGCGTTATCAGGGGCAGAAGCTCCACCAAAAACTGGAGGGGCATGCGAT
GCCCGTCCGAAGTTTATGCTTTTCTGCAGACGGGACCCTCCTCTTCACGG
CTTCAGATGACATGAGGGTCAATGTCTATGACGTGTGAGTGCCATGGGCC
GTTGTTTGTGGGGGTATGTCCCCCGCATTGAGTTGGACTACCCGTTCAAC
TCCCTCTCCTCCGCCCCCTGGTCATTGTTTATCACACTACTGCAGCGCCT
GGTATACAAGATGCAGGTGGAAAAACGTTTCCTGGCCTTTTATGGCTGCT
TCCCCAATTGATGCACCCCAAGTGATCCTCTCCCTGTGCTTCCGGTTAAT
ATCAGGGCAAACACAAGCCTGGTGGCATCGTTCACAGGGCACACATCTTG
GGTTCTCAGTGTGGATTGCTGCCCAGACAAGAGGCACTTTGCTACTGGGT
GAGAAGAAGAACATTTGAGGATGTATGCGACATAAGGGCTGGTGCAAGCT
GCAATTGCTGGGCTCCAGCATAATTGATTGAACTCACCTGTGTTTTCATG
CTGAAGGTGGTTGGTGGCTGTTTGGAGAGGCTGAACCTATGCTATAGCCT
GAACTAACGGTTGATTGGCTTTGTCCACACACTGCGCTTCATTGGGTGGC
AGGAGAAGCGGCAAAAAACAGTTCTGTTTTGTGAGTACAAATTCACTAGA
AGTCAAGGCATCCATCCACGGCAACCGTCCTTGGAAGAGGGGTGACCGCC
GTCAGTGGCAGTGCAGGACGTGTCCACCAAAATCCCCAGCAAACTCAATG
TGCCATGATGTGCCTTTCTGTTCTCAACTCTTTCATTTGGTGTTCGTAAT
CATCAGGGGGAGTGACCGGACGGTCAAGATATGGGACATGGCTGCCAAGG
AATGTGTGCACAATTTCGACTCCGTGCATGCGAACCAGGCAAGATACAAT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig937:23531..24480-

>mRNA_D-mesarthrocarpus_Contig937.10.1 ID=mRNA_D-mesarthrocarpus_Contig937.10.1|Name=mRNA_D-mesarthrocarpus_Contig937.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=321bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig937:23531..24480- (Discosporangium mesarthrocarpum MT17_79)
ATGCGTTATCAGGGGCAGAAGCTCCACCAAAAACTGGAGGGGCATGCGAT
GCCCGTCCGAAGTTTATGCTTTTCTGCAGACGGGACCCTCCTCTTCACGG
CTTCAGATGACATGAGGGTCAATGTCTATGACGTGGCAAACACAAGCCTG
GTGGCATCGTTCACAGGGCACACATCTTGGGTTCTCAGTGTGGATTGCTG
CCCAGACAAGAGGCACTTTGCTACTGGGGGGAGTGACCGGACGGTCAAGA
TATGGGACATGGCTGCCAAGGAATGTGTGCACAATTTCGACTCCGTGCAT
GCGAACCAGGCAAGATACAAT
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