mRNA_D-mesarthrocarpus_Contig9367.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9367.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9367.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9367.2.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.370e-12
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:  262 VSYPFFVPLVEEVRQQG*LGSGGADAAGRPGIPLEAKVLSVLHILGRETVLDGMFFMTGMSESTAWRVLHRFCECFSQHMFETWIGLPKNDEELQQTIE 558
            V YPFFV LVE VR +    +G +D  GR  +P+E KVL+ L IL R  V   ++ M+ +S  T     HRFC+ F+  +++ ++ LP   E+L++ +E
Sbjct:  138 VPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTG-EDLRKVME 235
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9367.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPH7_9PHAE3.370e-1238.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9367contigD-mesarthrocarpus_Contig9367:3162..3725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size564
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791090.4008272-UTR-D-mesarthrocarpus_Contig9367:3161..31631680791090.4008272-UTR-D-mesarthrocarpus_Contig9367:3161..3163Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9367 3162..3163 +
1680791090.4261215-UTR-D-mesarthrocarpus_Contig9367:3496..37251680791090.4261215-UTR-D-mesarthrocarpus_Contig9367:3496..3725Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9367 3497..3725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791090.4112432-CDS-D-mesarthrocarpus_Contig9367:3163..34961680791090.4112432-CDS-D-mesarthrocarpus_Contig9367:3163..3496Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9367 3164..3496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9367.2.1prot_D-mesarthrocarpus_Contig9367.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9367 3164..3496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9367.2.1

>prot_D-mesarthrocarpus_Contig9367.2.1 ID=prot_D-mesarthrocarpus_Contig9367.2.1|Name=mRNA_D-mesarthrocarpus_Contig9367.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
MTNASRRKTAGLLMLATAQNWERQRLCASWAVLESNDEEAQSVRERRYRD
MYPCPNYRESPWMKMLPDESLGDPESRSAIFFRRRLRFLSVLCTARRRGK
AAGLAWKWRG*
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mRNA from alignment at D-mesarthrocarpus_Contig9367:3162..3725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9367.2.1 ID=mRNA_D-mesarthrocarpus_Contig9367.2.1|Name=mRNA_D-mesarthrocarpus_Contig9367.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=564bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9367:3162..3725+ (Discosporangium mesarthrocarpum MT17_79)
CAATGACGAACGCGAGCAGACGAAAGACCGCTGGACTCCTCATGCTTGCT
ACCGCTCAAAACTGGGAGCGACAGAGGTTGTGCGCATCATGGGCGGTGCT
GGAGAGCAATGATGAAGAGGCGCAGTCCGTGAGGGAGAGGCGGTATCGTG
ACATGTATCCATGTCCCAATTACAGGGAGTCGCCATGGATGAAGATGCTC
CCAGATGAAAGCCTTGGCGACCCGGAGTCTAGGAGTGCGATATTTTTTCG
TCGGAGACTCCGTTTCCTATCCGTTCTTTGTACCGCTCGTAGAAGAGGTA
AGGCAGCAGGGTTAGCTTGGAAGTGGCGGGGCTGATGCTGCTGGCCGCCC
GGGCATCCCGCTGGAAGCGAAGGTGTTATCGGTCTTGCACATCCTCGGAA
GAGAAACTGTACTCGATGGTATGTTCTTTATGACGGGGATGAGTGAGAGT
ACGGCATGGAGAGTGTTGCACAGGTTTTGCGAGTGCTTCAGTCAACACAT
GTTCGAAACCTGGATTGGGTTGCCTAAGAATGACGAGGAATTGCAACAAA
CCATAGAAGTACCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9367:3162..3725+

>mRNA_D-mesarthrocarpus_Contig9367.2.1 ID=mRNA_D-mesarthrocarpus_Contig9367.2.1|Name=mRNA_D-mesarthrocarpus_Contig9367.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9367:3162..3725+ (Discosporangium mesarthrocarpum MT17_79)
ATGACGAACGCGAGCAGACGAAAGACCGCTGGACTCCTCATGCTTGCTAC
CGCTCAAAACTGGGAGCGACAGAGGTTGTGCGCATCATGGGCGGTGCTGG
AGAGCAATGATGAAGAGGCGCAGTCCGTGAGGGAGAGGCGGTATCGTGAC
ATGTATCCATGTCCCAATTACAGGGAGTCGCCATGGATGAAGATGCTCCC
AGATGAAAGCCTTGGCGACCCGGAGTCTAGGAGTGCGATATTTTTTCGTC
GGAGACTCCGTTTCCTATCCGTTCTTTGTACCGCTCGTAGAAGAGGTAAG
GCAGCAGGGTTAGCTTGGAAGTGGCGGGGCTGA
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