mRNA_D-mesarthrocarpus_Contig9366.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9366.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9366.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A6H5JUC6_9PHAE (TOPEUc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 6.600e-28
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 1
Query:  310 KFKEMNRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
            K K++ R  KI++AM+VY WWEE  HE GKQW+SLEHNG HF+PEY+PHGVKL YDGK VNLT++QEEVATFYAS+
Sbjct:  389 KPKKLTRAEKIEKAMKVYMWWEEPAHEPGKQWDSLEHNGAHFAPEYKPHGVKLKYDGKEVNLTTQQEEVATFYASM 464          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: D7G042_ECTSI (TOPEUc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G042_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.310e-27
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 1
Query:  313 FKEMN-RTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
            FKEM  R  KI++AM+VY WWEE  HE GKQW+SLEHNG HF+PEY+PHGVKL YDGK V+LT++QEEVATFYAS+
Sbjct:  337 FKEMTTRAEKIEKAMKVYMWWEEPAHEPGKQWDSLEHNGAHFAPEYKPHGVKLKYDGKEVHLTTQQEEVATFYASM 412          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A7S2W7J0_9STRA (DNA topoisomerase I n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W7J0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.380e-19
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  277 VQPKAAPQNTLKFK-EMNRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
            V+ + AP  T+K K E+ R  +++ AM+ +KWWE+  HE G +W +LEHNG  F P Y+ HG+KL+YDG+ + LT  QEEVAT YA +
Sbjct:   78 VRSRPAPTGTVKVKKEVPRLTQLETAMKAHKWWEDPRHESGTKWTTLEHNGVMFPPPYKSHGIKLIYDGREIELTPEQEEVATLYADM 165          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A7S2CY07_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY07_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.130e-18
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  313 FKEMNRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
             K+MN+  ++DQAM+ +KWWE      G QW  +EHNG  F PEY+PHGV LLY G+P+ L+   EE+ATFYA+V
Sbjct:  179 LKQMNKMERLDQAMKAFKWWEHEDLPDGVQWLGMEHNGLAFPPEYEPHGVPLLYKGEPIELSPELEELATFYAAV 253          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A4D9D5J1_9STRA (TOPEUc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5J1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.920e-18
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  325 NRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
            ++  +I+QAM+ +KWW++ P   G QW +LEHNG  F P+Y PHGVK+LYDGK V L S  EEVATF+AS+
Sbjct:  212 SKAVRIEQAMKAFKWWDQEPLPQGIQWRALEHNGIFFPPDYVPHGVKMLYDGKEVELPSDLEEVATFFASM 282          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A7S1CPK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPK8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.250e-18
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  277 VQPKAAPQNTLKFKEMNRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
             +PK A     K K +  T K+D AM  YKWW++     G  W +LEH G  FS EY PHG+++ YDGKPV LT  QEEVAT+YA+V
Sbjct:   27 AKPKVAA-GPKKKKALTATEKLDLAMTSYKWWDDEELPKGINWRTLEHCGVAFSDEYTPHGIRMFYDGKPVELTPAQEEVATWYATV 112          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A6G0WXZ6_9STRA (TOPEUc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXZ6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.410e-17
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  310 KFKEMNRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
            K K  N++ ++D A++ Y+WW       G QW SLEHNG  F P Y PHG+ LLYDG+P  LT  QEE+A+F+AS+
Sbjct:   84 KLKVQNKSERLDMAIKAYRWWNAEELPEGIQWRSLEHNGVLFPPTYVPHGIPLLYDGQPAELTPEQEEIASFFASI 159          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A7S3XV41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV41_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 1.170e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  313 FKEMNRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
            FKE  R  K+D AM+ +KWWE    E G  W  LEHNG  F PE++ HG+KLLY+G+P++L+  QEE+AT YA++
Sbjct:  171 FKEATRVEKLDLAMKAFKWWEAPELEEGILWRYLEHNGIIFPPEHKVHGIKLLYEGEPLDLSPEQEELATLYAAM 245          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A024G3P1_9STRA (TOPEUc domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G3P1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.300e-16
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  310 KFKEMNRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
            K K  ++  ++D A++ Y+WW+      G QW +LEHNG  F P Y PHGV LLY GKP+ LT  QEE+ +FYA++
Sbjct:  136 KLKVHSKAERLDMAIKAYRWWKAEELPEGIQWRTLEHNGVFFPPAYAPHGVSLLYKGKPLKLTPAQEEIVSFYAAI 211          
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Match: A0A7S0W828_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W828_9CRYP)

HSP 1 Score: 79.0 bits (193), Expect = 1.130e-15
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  358 VYKWW-EEAPHEHGKQWESLEHNGTHFSPEYQPHGVKLLYDGKPVNLTSRQEEVATFYASV 537
            VY+WW EE P   GK+W  LEHNG  F P+Y+PHGVK+ YDG  V LT+ QE VAT YAS+
Sbjct:   42 VYEWWKEEEPLPEGKKWRFLEHNGVIFPPKYEPHGVKMKYDGHDVELTADQEAVATMYASM 102          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9366.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUC6_9PHAE6.600e-2871.05TOPEUc domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G042_ECTSI2.310e-2772.37TOPEUc domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2W7J0_9STRA2.380e-1948.86DNA topoisomerase I n=1 Tax=labyrinthulid quahog p... [more]
A0A7S2CY07_9STRA2.130e-1853.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9D5J1_9STRA2.920e-1856.34TOPEUc domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S1CPK8_9STRA3.250e-1850.57Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6G0WXZ6_9STRA2.410e-1750.00TOPEUc domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A7S3XV41_HETAK1.170e-1652.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024G3P1_9STRA7.300e-1647.37TOPEUc domain-containing protein n=1 Tax=Albugo ca... [more]
A0A7S0W828_9CRYP1.130e-1560.66Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9366contigD-mesarthrocarpus_Contig9366:3920..4456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G042
Preferred nameTOP1
PFAMsTopo_C_assoc,Topoisom_I,Topoisom_I_N
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K03163
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000228,GO:0000932,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001650,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0003916,GO:0003917,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006325,GO:0006338,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007059,GO:0007623,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009330,GO:0009987,GO:0010468,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016853,GO:0017076,GO:0018105,GO:0018193,GO:0018209,GO:0019222,GO:0019538,GO:0019904,GO:0030554,GO:0031298,GO:0031974,GO:0031981,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0032922,GO:0032991,GO:0032993,GO:0034641,GO:0034645,GO:0035639,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0042221,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0046483,GO:0048511,GO:0050789,GO:0050896,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097100,GO:0097159,GO:0097367,GO:0140096,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1990837,GO:1990904
Exons1
Evalue3.79e-28
EggNOG OGsCOG3569@1|root,KOG0981@2759|Eukaryota
EC5.99.1.2
DescriptionDNA topoisomerase type I activity
Cds size537
COG categoryL
BRITEko00000,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791090.362382-CDS-D-mesarthrocarpus_Contig9366:3919..44561680791090.362382-CDS-D-mesarthrocarpus_Contig9366:3919..4456Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9366 3920..4456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9366.2.1prot_D-mesarthrocarpus_Contig9366.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9366 3920..4456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9366.2.1

>prot_D-mesarthrocarpus_Contig9366.2.1 ID=prot_D-mesarthrocarpus_Contig9366.2.1|Name=mRNA_D-mesarthrocarpus_Contig9366.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=179bp
DDDSDFEVKPKDKKRKVSSGGGVSKNGRSREDGGDTDDSSDDDFEEASKK
RAKKHNKSMAKGSGKGSGKATSRSGGAGAGAGTGGRRAKEKAVQPKAAPQ
NTLKFKEMNRTAKIDQAMRVYKWWEEAPHEHGKQWESLEHNGTHFSPEYQ
PHGVKLLYDGKPVNLTSRQEEVATFYASV
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mRNA from alignment at D-mesarthrocarpus_Contig9366:3920..4456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9366.2.1 ID=mRNA_D-mesarthrocarpus_Contig9366.2.1|Name=mRNA_D-mesarthrocarpus_Contig9366.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=537bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9366:3920..4456- (Discosporangium mesarthrocarpum MT17_79)
GACGACGACAGCGACTTCGAGGTCAAGCCAAAGGACAAGAAGCGGAAGGT GTCCTCGGGGGGAGGGGTTAGCAAGAATGGTCGCTCGCGGGAGGATGGGG GGGATACGGATGACTCCAGCGATGATGACTTCGAGGAGGCAAGCAAGAAA AGGGCCAAGAAGCACAACAAGAGCATGGCGAAAGGTTCTGGGAAGGGCAG CGGCAAGGCCACCTCGCGGAGTGGGGGAGCAGGAGCAGGGGCTGGGACCG GGGGGAGGAGGGCGAAAGAGAAGGCTGTGCAGCCGAAGGCCGCCCCACAG AATACTCTTAAGTTCAAGGAGATGAACCGTACTGCGAAGATCGACCAGGC GATGAGGGTGTACAAGTGGTGGGAGGAGGCCCCCCACGAGCATGGCAAGC AGTGGGAGTCGCTGGAGCACAACGGGACACACTTTTCCCCCGAGTACCAG CCGCACGGGGTGAAACTGCTGTACGACGGGAAGCCCGTCAACCTCACCTC GAGGCAGGAGGAGGTGGCCACCTTCTACGCCAGCGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9366:3920..4456-

>mRNA_D-mesarthrocarpus_Contig9366.2.1 ID=mRNA_D-mesarthrocarpus_Contig9366.2.1|Name=mRNA_D-mesarthrocarpus_Contig9366.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=537bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9366:3920..4456- (Discosporangium mesarthrocarpum MT17_79)
GACGACGACAGCGACTTCGAGGTCAAGCCAAAGGACAAGAAGCGGAAGGT
GTCCTCGGGGGGAGGGGTTAGCAAGAATGGTCGCTCGCGGGAGGATGGGG
GGGATACGGATGACTCCAGCGATGATGACTTCGAGGAGGCAAGCAAGAAA
AGGGCCAAGAAGCACAACAAGAGCATGGCGAAAGGTTCTGGGAAGGGCAG
CGGCAAGGCCACCTCGCGGAGTGGGGGAGCAGGAGCAGGGGCTGGGACCG
GGGGGAGGAGGGCGAAAGAGAAGGCTGTGCAGCCGAAGGCCGCCCCACAG
AATACTCTTAAGTTCAAGGAGATGAACCGTACTGCGAAGATCGACCAGGC
GATGAGGGTGTACAAGTGGTGGGAGGAGGCCCCCCACGAGCATGGCAAGC
AGTGGGAGTCGCTGGAGCACAACGGGACACACTTTTCCCCCGAGTACCAG
CCGCACGGGGTGAAACTGCTGTACGACGGGAAGCCCGTCAACCTCACCTC
GAGGCAGGAGGAGGTGGCCACCTTCTACGCCAGCGTG
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