mRNA_D-mesarthrocarpus_Contig9362.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9362.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9362.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9362.1.1 vs. uniprot
Match: A0A7S2SFB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFB7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.250e-17
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 3 
Query:  573 DLERRCVLQLAWLRRHPKVLTPCCEAPMCFKCKAN-WHDSIDCLQMMQDLVTGMVDVQYCPSCNVPTIKAEGCNHMICV---SRMWLGS 827
            D+ERRC L L+W+RR P V T CC+  +CFKCK + +H+   C +   D +   ++ QYCP C VPTI++EGC+HMICV   S +W G+
Sbjct:  432 DVERRCTLNLSWVRRFPFVYTRCCDCQVCFKCKTSGFHEGQTCAEKQADELE--IEAQYCPECGVPTIRSEGCSHMICVCGASWIWEGA 518
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BLAST of mRNA_D-mesarthrocarpus_Contig9362.1.1 vs. uniprot
Match: A0A813D6I4_POLGL (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D6I4_POLGL)

HSP 1 Score: 93.6 bits (231), Expect = 3.570e-16
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3 
Query:  573 DLERRCVLQLAWLRRHPKVLTPCCEAPMCFKCKAN-WHDSIDCLQMMQDLVTGMVDVQYCPSCNVPTIKAEGCNHMICV 806
            D ERR  +QLAWLRR+PKV T CC A +CFKCK   WH ++ C +  Q   TG  D Q+CP+C VPTI ++GCNH+ CV
Sbjct:  512 DPERRLAMQLAWLRRYPKVRTTCCRASVCFKCKVRGWHRNLSC-EERQRQETGR-DAQFCPNCQVPTIWSDGCNHIRCV 588
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BLAST of mRNA_D-mesarthrocarpus_Contig9362.1.1 vs. uniprot
Match: A0A813LKB7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LKB7_POLGL)

HSP 1 Score: 93.6 bits (231), Expect = 4.020e-16
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3 
Query:  573 DLERRCVLQLAWLRRHPKVLTPCCEAPMCFKCKAN-WHDSIDCLQMMQDLVTGMVDVQYCPSCNVPTIKAEGCNHMICV 806
            D ERR  +QLAWLRR+PKV T CC A +CFKCK   WH ++ C +  Q   TG  D Q+CP+C VPTI ++GCNH+ CV
Sbjct:  255 DPERRLAMQLAWLRRYPKVRTTCCRASVCFKCKVRGWHRNLSC-EERQRQETGR-DAQFCPNCQVPTIWSDGCNHIRCV 331
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BLAST of mRNA_D-mesarthrocarpus_Contig9362.1.1 vs. uniprot
Match: A0A7S0ZSN9_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZSN9_NOCSC)

HSP 1 Score: 93.2 bits (230), Expect = 4.340e-16
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 3 
Query:  573 DLERRCVLQLAWLRRHPKVLTPCCEAPMCFKCK-ANWHDSIDCLQMMQDLVTGMVDVQYCPSCNVPTIKAEGCNHMICV 806
            D ERR   QLA+ RR+PK+LTPCC    CFKCK  +WHD   C    +  +   ++VQ+CP C VPT+K+EGC+H++CV
Sbjct:  374 DPERRGCFQLAFFRRYPKILTPCCSVSFCFKCKIGDWHDGESCEDRQRAEMD--INVQFCPECGVPTVKSEGCDHIVCV 450
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BLAST of mRNA_D-mesarthrocarpus_Contig9362.1.1 vs. uniprot
Match: A0A813GAU2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GAU2_POLGL)

HSP 1 Score: 93.6 bits (231), Expect = 4.420e-16
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3 
Query:  573 DLERRCVLQLAWLRRHPKVLTPCCEAPMCFKCKAN-WHDSIDCLQMMQDLVTGMVDVQYCPSCNVPTIKAEGCNHMICV 806
            D ERR  +QLAWLRR+PKV T CC A +CFKCK   WH ++ C +  Q   TG  D Q+CP+C VPTI ++GCNH+ CV
Sbjct:  958 DPERRLAMQLAWLRRYPKVRTTCCRASVCFKCKVRGWHRNLSC-EERQRQETGR-DAQFCPNCQVPTIWSDGCNHIRCV 1034
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9362.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2SFB7_9STRA5.250e-1748.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A813D6I4_POLGL3.570e-1655.70Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A813LKB7_POLGL4.020e-1655.70Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S0ZSN9_NOCSC4.340e-1650.63Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A813GAU2_POLGL4.420e-1655.70Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9362contigD-mesarthrocarpus_Contig9362:197..4258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008613042.1
Model size1692
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.42e-11
EggNOG OGs2EGD3@1|root,2SMBX@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_006520.1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791090.2191432-UTR-D-mesarthrocarpus_Contig9362:196..10581680791090.2191432-UTR-D-mesarthrocarpus_Contig9362:196..1058Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9362 197..1058 -
1680791090.2757335-UTR-D-mesarthrocarpus_Contig9362:3743..42581680791090.2757335-UTR-D-mesarthrocarpus_Contig9362:3743..4258Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9362 3744..4258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791090.2317111-CDS-D-mesarthrocarpus_Contig9362:1058..11041680791090.2317111-CDS-D-mesarthrocarpus_Contig9362:1058..1104Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9362 1059..1104 -
1680791090.2429788-CDS-D-mesarthrocarpus_Contig9362:2228..23861680791090.2429788-CDS-D-mesarthrocarpus_Contig9362:2228..2386Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9362 2229..2386 -
1680791090.2647243-CDS-D-mesarthrocarpus_Contig9362:3632..37431680791090.2647243-CDS-D-mesarthrocarpus_Contig9362:3632..3743Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9362 3633..3743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9362.1.1prot_D-mesarthrocarpus_Contig9362.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9362 1059..3743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9362.1.1

>prot_D-mesarthrocarpus_Contig9362.1.1 ID=prot_D-mesarthrocarpus_Contig9362.1.1|Name=mRNA_D-mesarthrocarpus_Contig9362.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=105bp
MVDLNMVNLNMVNLNKQENDLERRCVLQLAWLRRHPKVLTPCCEAPMCFK
CKANWHDSIDCLQMMQDLVTGMVDVQYCPSCNVPTIKAEGCNHMICVSRM
WLGS*
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mRNA from alignment at D-mesarthrocarpus_Contig9362:197..4258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9362.1.1 ID=mRNA_D-mesarthrocarpus_Contig9362.1.1|Name=mRNA_D-mesarthrocarpus_Contig9362.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4062bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9362:197..4258- (Discosporangium mesarthrocarpum MT17_79)
TTGCAGGTCAGGGGGAAGAAACGGACAGCCTGCCCCAGCTGACAGATGAC
TGGAGCCGGAACATCGAGCACTTCCTGCAAAAGGCGCGGTCCGTGTTATG
CAAGGGTGCTTTCTTTTTTTTCCCCTGGATCCCAGAGTTGCTCATGGACA
AGAGGGGATGTGCCTCTCCTCTCTCTGATCTCGTGTCTGTCGTGGATGGT
GTTGAGTCAAGCAGGCACTCTCAAGGGGGCTACAGGGAAATGGGCATCCC
ACCCACCGTACTTTGTAAAGTATGTGATTATGGGGTGACCTCACCATGAC
GTGTGATATCCCGCTCCCCTTGTGTTTTTTCCGCGTTTATTTTTGCTGGT
GCCCTGGAGTATGCTGCCTTCACCTAGGAAAACACCGATCACCAGTGCCC
AACGCTTATCACTCAACCTGGGGGGCAGAGTGCGCCCCTCCCTGCCTCTT
AATGTTGCATAGTGAGGCTCTGCCCCTTTGTGGTGTGGTGTGGCGTGGCG
TGATTTTTTGTGCACATGGTGGACCTCAACATGGTGAACCTCAACATGGT
AAACCTTAACAAACAGGAGAATGACCTGGAGAGGAGATGCGTACTTCAAC
TCGCATGGCTCCGTCGCCACCCCAAGGTGAGGTCATCAATTAATTGTGAT
TGAACCGTTTTTTTTCTTGTTTAATTGGCTTTTTTCCCCTTCTTTTGTTG
GAAGTCTCAAGAGTGTGAAATGAGCTTGGTGTTGGGTCAAAGCGTGCCCA
TCTTCTCAACTATTTATTGTGTGGAGGTGTAAACATTGCTTGAAGGCTTA
TCTAAATGTTTGAAGGCATTTCTTCAGTGTCTGACATCGGCATCAGGGTT
TGGAATTGAAAACAAAGGGTGTTAATCGATAGCAAAGGTTTTAACCAATA
GCAAAAGATATTAATCGCTATTCGAATCATAGACTTAGATGTAGCAGCCT
CAGGTATCCAACCTATCAGGTGGCAATGACTCCTTTCCACAACCTGGTTT
GCTTGTTGTCCTTACTGGCAATTATTTTCGTAGAGAGGTGGATGGTTTTT
GCACTTGAAGAGGGTGGTTGACGGAGGTGAGGCTGTCTTTTTGTTCCTGC
ACAGATCTTGCCAGGTGTTTTTCTTCTTTGTTCAAATAAAGAACAGCTAC
CCCAAAAAAAAAGAAAGTTTTTATGACTTGGGAACAATATTTAGGGAAGG
TTGTATTGGTCTGCACAAGCAGGTCCAAGTCAAGGCAAATCTTTCCATTT
TGCTAGAAAGTTTGAGGAACCCCCCGATCCAATCCATAGCTCACATTCTC
CGAGGGGTTAGGGTTAGGGTTAGGGTTAGGTTAGAGCAAAGCTAGTGTAC
TACCGAAGGGTTAGGGTTAGGGTTAGGGTTAGGTTCGAGAACGTGTTCAT
GTGCACTGCCGCAAGAAAGCTGTAGTGTGTATTTGCTGTACATGGACATC
CATATGATACCAGACTCCTCCATGTACATGGGATATTAGGCCCTGGCACC
CCGAACTCCTCTGAGCCAAGCAATATTTTTCTAACGTTTGGTTAACATAC
TCCCTTAGGTAAAGACATGACACCCCACGTCCCAATCCTGTTTCTTGGCC
ATGTTGATCAAGCAGCCAAGGAAGTCCACCGAGATGCTTTATCCTTTGAC
AGGGTTGTGGTGGTGTGGGTAGAAGGGTAATCATTGCCCTCCCCTGCGGC
AAACGATTTTCCATTTTTTTCACCCCCCTCAACTGCTCGGGAGTGGTATG
CATTGAAGGGTCAAAAGCTCACCCAACGGATCCGGCCGCAGTCCTGCTCG
AGAAGGCAACTCGAGAAAGTGAAAGCGACTTCAGCAGCTCCTTGCTTGCC
CTTGCTCCGTAACCTGCACCAGGTATTAACACCTTGCTGCGAGGCGCCCA
TGTGCTTCAAGTGCAAGGCGAACTGGCACGATTCCATCGATTGCCTGCAG
ATGATGCAGGACCTTGTAACCGGTATGGTGGACGTTCAGTACTGCCCGAG
CTGCAATGTGCCGACAATTAAGGCGGAGGGGTGAGCCAACTCCCCAGTCT
GTGAATAGGGCTAGGGTTACCTGAGACCCGAGCACTGCCCTTGTCCTGGT
GTCCCTCACTATTGCCCCTCTGTCAGGGAGGTTTTTGCCCTTTTTTCGGT
GAATCAGTGGGAAGCTTTTCACTTTTGTGGTTTTTGGCCTCCTTGTTATC
GCTTGTGAGTGTCGTGTCTGAGCCCGGCTGTGTTGTAGCTCTGCAATTCT
CTGGGGGAAGTGGAGCATTAACCGGATGTGGGGGAAGAATCTCGAGGAAG
GAATCGAATCGCTGTACTTTCCCGGCCTTGAGACGCAGCATTGAGACCAA
ACAGTCAAGGTGCAGTTGTCCTGCAGTCTTCTGTACTTTGTCCCTTGTCC
CTCAAGGTCATCTATTCAACGCCCATCTGCATGCTTGGTTGTCCTGTCCC
GTTGCCCCAAGTTGAAGTTCATGAATGTGTGTACCCAGCCCAGCCCTCCT
TCCCATTTTATCGGGACAGCTGATCTAGAATGCGCCGCAACACCAACAAG
AGCACACTCTCAGTTCTCGTGGAAGTAAGATCCCATGCCTTTTTGTGATT
TAGGAAGTATGATGACACTCCCAGAACTATTATTATTATTATTATTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATATTGTTGTTA
TTACTATTATTATTATTATTAATACTATTATTATTAATACTATTATTATT
ATTGTTATTATTATATTGTTGTTATTACTATTATTATTATTATTATTATT
ATTATTATTATTATTATTGGAGTGATAATGTTAATAGTAATGTTGTCCAG
ATCTGTCCGGTGCTCCTTCATGGATTGGGTTTTTTTGCCTTCATATTTTT
GGGAGTTCGTGTGTGTGCACAGTAACGGCAATTAAGGACACCCGGTCATA
ACACCTGCTCACGGCAAAGCGCTCGCATCAAAGTATTGGCTTCTGCTTCA
CTCATTGTGTACCTGTACTCCCCTTGGCCATGCAAAATGATGCAACCCTA
ACCCTGAGCCTAACCCTATCCCGATCCCTGCCTGCCTTGCCGTCACTTAT
TTTGCTGTCCCTGACCTTGCTCTGCTGGCACCATATCCATGCGCATTGAG
GCAGCTGCAACCACATGATATGTGTAAGTCGGATGTGGCTAGGCTCATAG
TTGACTGAGGCTTCTTGTTCTCCTCGGAAGTTTGGAGATATGTAGTTCTT
TAAGGGTAGGTTTAATTTTATTTTTCTGCAGCTCCTGTCTGAAGAACTGA
CCCCAACTTCTACCCCTGACGTCAAAATTACTTGGTACCTTGAGCTAGCA
GGATATGCCACTTTGAGTCTGAACAGAAGTGCGTTTTTTTTGTCGATTGC
AGCAGCAATTGCAGTTGTTGACCGCTAGGGGTCTGCAGTAGGAGCCCTGC
CGAGATTTGCCTGAGATGACCTCCACCAAGAGCGTATTCCCGAGGGCATT
GCATTGCGTACCTCTTGCCACCTTCGAAACTGTGTTGTGTGAGAGCAAGA
GGGAAAAACTCTTCGAAGGCGTTTCGCTTGCTTCGGACTTATTCTTCGCC
TCCTGCAAATTTTTCCAACTCGATGGCGGCCCCCAGGTGCCAACTACGCC
CTCTCATGGTTGCCACCTCCCTCCCTACTCTCCCCTCAGGTCTGCGGGGT
GGAATGGAAGTGGGAGGGGGGCCCAGATGTAGAAGACTATTAACCTATGC
AGTAGACGGGCGGTGGCTTCAATCATGCTGCACCAATCATCTGAACTCAT
ATGGTGGGCTTTGCGGATGGTTGTAGGTACAGCAAGTACTGGCCCAACAT
GCATATATTGTCCAGTGGGTTCTTTCAGCCCGCCTCAATCATGCACAAGG
CACCAAGTCGTTGCAGACTTTCCTTCTTGTACACCAAGTAGCAGTAGCAA
AATCTAGATGCCAATGTTTGCGTGGATAGTAAGACTTTCTATGGATGCCA
AGGTTTTACCTGTGAAGTTGTCCTTTTGCTTCATAATGCACGGTTAAACA
GCTGGTGAGAAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9362:197..4258-

>mRNA_D-mesarthrocarpus_Contig9362.1.1 ID=mRNA_D-mesarthrocarpus_Contig9362.1.1|Name=mRNA_D-mesarthrocarpus_Contig9362.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=315bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9362:197..4258- (Discosporangium mesarthrocarpum MT17_79)
ATGGTGGACCTCAACATGGTGAACCTCAACATGGTAAACCTTAACAAACA
GGAGAATGACCTGGAGAGGAGATGCGTACTTCAACTCGCATGGCTCCGTC
GCCACCCCAAGGTATTAACACCTTGCTGCGAGGCGCCCATGTGCTTCAAG
TGCAAGGCGAACTGGCACGATTCCATCGATTGCCTGCAGATGATGCAGGA
CCTTGTAACCGGTATGGTGGACGTTCAGTACTGCCCGAGCTGCAATGTGC
CGACAATTAAGGCGGAGGGCTGCAACCACATGATATGTGTAAGTCGGATG
TGGCTAGGCTCATAG
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