mRNA_D-mesarthrocarpus_Contig9353.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9353.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9353.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9353.2.1 vs. uniprot
Match: D7FSH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSH1_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 7.060e-33
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:  238 RGKPRLCMSTQGPHSSDSEMEFCARRLNDLVTVQAMRTATQYWLELRGNMYAEWLVRYTESQGGVEVIGWKAFLEGMLRAPVEEIVVKKLVKKPRGGSGTNPYLADR 558
            RG P   +     + +D+E EF A+RL DL+T  A+ TA  YW+ELRGNMY EWL RY E +GGVE +GW AF  GMLRAP E++VVKKL+K PRGGSG NP+LADR
Sbjct:   57 RGSP---LHMNQSYKNDAEAEFYAKRLLDLITHNALLTANTYWMELRGNMYIEWLNRYIEERGGVEDVGWHAFFAGMLRAPPEDVVVKKLIKSPRGGSGNNPFLADR 160
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BLAST of mRNA_D-mesarthrocarpus_Contig9353.2.1 vs. uniprot
Match: A0A835Z7Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.540e-24
Identity = 50/97 (51.55%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:  289 SEMEFCARRLNDLVTVQAMRTATQYWLELRGNMYAEWLVRYTESQGG---VEVIGWKAFLEGMLRAPVEEIVVKKLVKKPRGGSGTNPYLADRFVLA 570
            +E     RRL +++T ++++TA  YWLELRGNMY+E++ R+TE +GG   V   GW+ FL  +L +P EE++++K+VKKPRGGSGTNPYLA R V++
Sbjct:    3 AEAADAERRLKNVLTEKSLQTAMYYWLELRGNMYSEYMARFTEGEGGGGSVVARGWRTFLSNLLSSPPEEVIIEKVVKKPRGGSGTNPYLAARKVVS 99
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BLAST of mRNA_D-mesarthrocarpus_Contig9353.2.1 vs. uniprot
Match: A0A835YQU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.430e-14
Identity = 44/145 (30.34%), Postives = 76/145 (52.41%), Query Frame = 1 
Query:  148 RRGWGNLGFLLILVAYVSSFRGGLELSRLTRGKP---------RLCMSTQGPHSSDSEMEFCARRLNDLVTVQAMRTATQYWLELRGNMYAEWLVRYTESQGGVEVIGWKAFLEGMLRAPVEEIVVKKLVKKPRGGSGTNPYLAD 555
            RRG     + ++L++ +S+ R    L+ + R +          R+   + G   SD+E     R + +L+ VQA  +   YW+E R  +   WL  + E+   V  +GW  FL  ++R   EE+ V+K+ ++P+GGSG NP+L+D
Sbjct:    4 RRG----SYAVLLLSTLSAARAFAPLAPVARLRTIKKNSSSTLRMSSWSDGESESDAEAAHMERSVKNLLAVQASASVQYYWMEFRDELQPRWLKEFEEAGHNVGQVGWDHFLGSLMRTEPEEVTVRKMAQRPKGGSGNNPFLSD 144
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9353.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSH1_ECTSI7.060e-3359.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7Q1_9STRA5.540e-2451.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQU4_9STRA2.430e-1430.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9353contigD-mesarthrocarpus_Contig9353:3096..4373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEG6
Model size1025
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.79e-14
EggNOG OGs2E04B@1|root,2S7JZ@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_000870.1
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791089.2629979-UTR-D-mesarthrocarpus_Contig9353:3095..32061680791089.2629979-UTR-D-mesarthrocarpus_Contig9353:3095..3206Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9353 3096..3206 +
1680791089.301714-UTR-D-mesarthrocarpus_Contig9353:3948..43731680791089.301714-UTR-D-mesarthrocarpus_Contig9353:3948..4373Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9353 3949..4373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791089.2762206-CDS-D-mesarthrocarpus_Contig9353:3206..34741680791089.2762206-CDS-D-mesarthrocarpus_Contig9353:3206..3474Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9353 3207..3474 +
1680791089.2864876-CDS-D-mesarthrocarpus_Contig9353:3727..39481680791089.2864876-CDS-D-mesarthrocarpus_Contig9353:3727..3948Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9353 3728..3948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9353.2.1prot_D-mesarthrocarpus_Contig9353.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9353 3207..3948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9353.2.1

>prot_D-mesarthrocarpus_Contig9353.2.1 ID=prot_D-mesarthrocarpus_Contig9353.2.1|Name=mRNA_D-mesarthrocarpus_Contig9353.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=163bp
MPSCAAYTWRRLRRGWGNLGFLLILVAYVSSFRGGLELSRLTRGKPRLCM
STQGPHSSDSEMEFCARRLNDLVTVQAMRTATQYWLELRGNMYAEWLVRY
TESQGGVEVIGWKAFLEGMLRAPVEEIVVKKLVKKPRGGSGTNPYLADRF
VLARNLDIVVCI*
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mRNA from alignment at D-mesarthrocarpus_Contig9353:3096..4373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9353.2.1 ID=mRNA_D-mesarthrocarpus_Contig9353.2.1|Name=mRNA_D-mesarthrocarpus_Contig9353.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1278bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9353:3096..4373+ (Discosporangium mesarthrocarpum MT17_79)
TTCTCTCAGAAGATACTGAGTAGTACTGTTGAGACTTAATGAAAAACATC
GTCTAATCTCTGGAAACAACCTTGGTCGCACCGTTCTGCTGCTCGGCCTT
TGACCGGCACGATGCCTTCTTGTGCGGCTTACACCTGGAGACGACTCCGA
CGTGGCTGGGGGAACCTCGGATTCTTGTTGATTTTGGTTGCTTATGTCTC
TTCCTTCCGGGGAGGACTTGAGTTATCTAGACTTACGCGAGGAAAGCCCC
GTCTGTGCATGTCAACTCAGGGCCCTCACTCGAGCGACTCGGAAATGGAG
TTTTGCGCCAGGCGTTTGAATGATCTCGTCACCGTGCAAGCGATGCGTAC
CGCAACTCAATACTGGCTTGAGCTCCGAGGTTCGTGACGTACTTCGTAGC
TCCGAGAGTTCCACTCTTACCCTTTGTCTAGTATGCCGTCTCCAACTTCT
CATCCAGAGAAGGTTGTGGACATCAACTGCCCCGTTGTGCTCTGCACCTC
TGCCTTCATGCTTTCCCCTTCGGTGTTGCACTTGATAGACGTGGATCCTG
GTGTCCTCATCGGACATCCGCGTATCCGCCACGCCACTCTTCGCCTGCTT
TTATGGGCGCGCACCCTCCTCGTTTCCTCCAGGCAATATGTATGCGGAAT
GGTTAGTCAGGTACACCGAGTCCCAGGGCGGAGTCGAAGTCATCGGTTGG
AAGGCTTTTCTGGAGGGCATGCTTCGGGCACCCGTAGAGGAGATCGTAGT
GAAAAAATTGGTTAAAAAACCCAGGGGGGGGTCAGGCACAAATCCCTACC
TCGCGGACAGGTTTGTGCTGGCGCGTAATTTAGATATCGTCGTTTGTATA
TGAAAAAGAGTGACTGATGCTACCATCTGGCCCTGGTCTTTGATTTCGCC
AGGGTGCCGCGATTGTTTTCGTCTCTCAGACAGATAATAGAATTTGTACT
TGTCTTAACAGGGTGCCCTTGCTTGCCCATGCCCCATGCCATTCCTCCTG
CGGCCCCTGATTACGATGGATTGCTGTGGCTCTCAGGCAGGCCCACACTC
AGCTCTAAAAAGCTAATATCAACGACAGTTTCGTAGGTAGTGATGCAGGG
TTGTTCCTTCGAAGTACCTGCTACGGTACAATCGAAGTACAGTAGTGCTT
TATTTTGTTGTTTTGTTTTTTTTTAATGTTTTTCCCCCTTCTCTAGCCCT
GCTGTGTCAGTTTGTTAGCAGTTGATGATTGCTCTTGGTCCTGCAGCCTC
TGTGGGCGTTCCCCATTCTTGTGCTCCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9353:3096..4373+

>mRNA_D-mesarthrocarpus_Contig9353.2.1 ID=mRNA_D-mesarthrocarpus_Contig9353.2.1|Name=mRNA_D-mesarthrocarpus_Contig9353.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=489bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9353:3096..4373+ (Discosporangium mesarthrocarpum MT17_79)
ATGCCTTCTTGTGCGGCTTACACCTGGAGACGACTCCGACGTGGCTGGGG
GAACCTCGGATTCTTGTTGATTTTGGTTGCTTATGTCTCTTCCTTCCGGG
GAGGACTTGAGTTATCTAGACTTACGCGAGGAAAGCCCCGTCTGTGCATG
TCAACTCAGGGCCCTCACTCGAGCGACTCGGAAATGGAGTTTTGCGCCAG
GCGTTTGAATGATCTCGTCACCGTGCAAGCGATGCGTACCGCAACTCAAT
ACTGGCTTGAGCTCCGAGGCAATATGTATGCGGAATGGTTAGTCAGGTAC
ACCGAGTCCCAGGGCGGAGTCGAAGTCATCGGTTGGAAGGCTTTTCTGGA
GGGCATGCTTCGGGCACCCGTAGAGGAGATCGTAGTGAAAAAATTGGTTA
AAAAACCCAGGGGGGGGTCAGGCACAAATCCCTACCTCGCGGACAGGTTT
GTGCTGGCGCGTAATTTAGATATCGTCGTTTGTATATGA
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