mRNA_D-mesarthrocarpus_Contig9348.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9348.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9348.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9348.3.1 vs. uniprot
Match: D8LMV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV7_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.160e-9
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   97 GDFSNISRVRRFKASLRSAAAHASKMRMAYAKRELNLEGLVKGCDGMEAGVLTKSTNP 270
            G F+   R+R F+A L+ AAAHASKM+ A+A REL++EG V+G D ++A VL KSTNP
Sbjct:  175 GRFATAGRLREFRAMLKGAAAHASKMKTAHANRELSIEGAVRGHD-VDAAVLNKSTNP 231
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9348.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMV7_ECTSI4.160e-956.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9348contigD-mesarthrocarpus_Contig9348:3945..4732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size272
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_003800.1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791088.7406437-CDS-D-mesarthrocarpus_Contig9348:3946..40391680791088.7406437-CDS-D-mesarthrocarpus_Contig9348:3946..4039Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9348 3947..4039 -
1680791088.755038-CDS-D-mesarthrocarpus_Contig9348:4555..47321680791088.755038-CDS-D-mesarthrocarpus_Contig9348:4555..4732Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9348 4556..4732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9348.3.1prot_D-mesarthrocarpus_Contig9348.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9348 3947..4732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9348.3.1

>prot_D-mesarthrocarpus_Contig9348.3.1 ID=prot_D-mesarthrocarpus_Contig9348.3.1|Name=mRNA_D-mesarthrocarpus_Contig9348.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=90bp
PGSLKVTAATKAVVQLGVASGGSLSLSESSDEGDFSNISRVRRFKASLRS
AAAHASKMRMAYAKRELNLEGLVKGCDGMEAGVLTKSTNP
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mRNA from alignment at D-mesarthrocarpus_Contig9348:3945..4732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9348.3.1 ID=mRNA_D-mesarthrocarpus_Contig9348.3.1|Name=mRNA_D-mesarthrocarpus_Contig9348.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=788bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9348:3945..4732- (Discosporangium mesarthrocarpum MT17_79)
CCTGGGTCCTTAAAAGTCACCGCAGCGACAAAAGCCGTCGTGCAACTAGG
AGTTGCTTCCGGTGGAAGCCTCTCCCTGTCAGAATCTTCAGACGAAGGCG
ATTTTTCCAACATATCGCGAGTGCGGCGGTTCAAGGCCTCCCTCAGGAGT
GCTGCGGCACACGCATCCAAGATGAGGGTATGGCAATAGTGCTAAAATAT
GGGGTAACTCGTGGTATCTCCCGGTCATTGCCGCGGATAATGAACGAATA
CGCTGGGTACTGAAAGTAATGGGGATTAGACTGGGGCAGAGCTCGCAGTT
TCCGACTCATTTCTTTGAAGTACATGCATCTCCATGAATTCTTTCGTTTT
TGCACTTTCCTGGTGTTGGTCTCCGAGTTTGTCACTTTTGTTTTGCTTGA
CTTGTTTTCGTACGGAAACGGGGTGGGCTTGGAAGCTCGTGTACTGATAG
CTCTACAAGGCGTGAGAGTACTCTTCTGTTAGAGATTTCCTGCACTTCGG
ACTTCTCGGCAACCCCGTCAAGAAGTCGCTCAGTTCATCTAGAGCACAGG
CTTGTGGGGTCGCGACCAACAATACATACTGCAGAGTACGAACGATTCGT
CGGCATGTTGTGAAACCAATGATATCCAAGGAGACAAGCCTTCACCATTC
CCTTCAACAACCTTTTCCCAACCTTGCTTAATCGTGCTCCAAGATGGCCT
ACGCCAAGCGCGAGCTGAACCTAGAAGGCCTTGTCAAAGGGTGCGACGGC
ATGGAGGCAGGGGTGCTGACCAAGTCTACCAATCCCGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9348:3945..4732-

>mRNA_D-mesarthrocarpus_Contig9348.3.1 ID=mRNA_D-mesarthrocarpus_Contig9348.3.1|Name=mRNA_D-mesarthrocarpus_Contig9348.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9348:3945..4732- (Discosporangium mesarthrocarpum MT17_79)
CCTGGGTCCTTAAAAGTCACCGCAGCGACAAAAGCCGTCGTGCAACTAGG
AGTTGCTTCCGGTGGAAGCCTCTCCCTGTCAGAATCTTCAGACGAAGGCG
ATTTTTCCAACATATCGCGAGTGCGGCGGTTCAAGGCCTCCCTCAGGAGT
GCTGCGGCACACGCATCCAAGATGAGGATGGCCTACGCCAAGCGCGAGCT
GAACCTAGAAGGCCTTGTCAAAGGGTGCGACGGCATGGAGGCAGGGGTGC
TGACCAAGTCTACCAATCCC
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