mRNA_D-mesarthrocarpus_Contig934.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig934.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig934.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig934.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig934contigD-mesarthrocarpus_Contig934:18119..18669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog40384.G7Y1M8
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,Death,F-box-like,NACHT,PNP_UDP_1,ZU5
Model size552
Max annot lvl33154|Opisthokonta
KEGG koko:K10380,ko:K10799,ko:K15502
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000573
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,38BVK@33154|Opisthokonta
EC2.4.2.30
Descriptionprotein localization to T-tubule
Cds size312
COG categoryM
BRITEko00000,ko00001,ko01000,ko01009,ko03032,ko03036,ko03400,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791088.0732226-CDS-D-mesarthrocarpus_Contig934:18118..184301680791088.0732226-CDS-D-mesarthrocarpus_Contig934:18118..18430Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig934 18119..18430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791088.0884144-UTR-D-mesarthrocarpus_Contig934:18430..186691680791088.0884144-UTR-D-mesarthrocarpus_Contig934:18430..18669Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig934 18431..18669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig934.5.1prot_D-mesarthrocarpus_Contig934.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig934 18119..18430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig934.5.1

>prot_D-mesarthrocarpus_Contig934.5.1 ID=prot_D-mesarthrocarpus_Contig934.5.1|Name=mRNA_D-mesarthrocarpus_Contig934.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=104bp
MVQELVGAGADIRVNTEDGRTLLHYAFLSGYGLVVRMLLRAGAPHEIRDE
AGGTAIRYAAQSGSVDAVKLLKAGAGTEESPIDGSTPLMASAEMGHHGVV
KELL
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mRNA from alignment at D-mesarthrocarpus_Contig934:18119..18669-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig934.5.1 ID=mRNA_D-mesarthrocarpus_Contig934.5.1|Name=mRNA_D-mesarthrocarpus_Contig934.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=551bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig934:18119..18669- (Discosporangium mesarthrocarpum MT17_79)
CGTCGGTGAACCTCAAGAAAGAGTACGTAGAGGAACGAGGAGGAAGGGCG
TGTAGTATAAAAGAAGGAAGGCCGTGTCTAATTTCGAGATGGATGCCGCC
CTGTGCAAACCCGCTGATGCCGGCCGCCTTGGAATTGTGCCAGGTTTTAA
TATTGCTGAGGGGCGGACTGCCGAAAAATGACGGGCAAGCATGAGTGGCC
TTGTCAACATGTCCCGCGGCATCCACCGGCCAAGCGCAGATGGTTCAAGA
ACTAGTGGGAGCTGGAGCTGATATAAGAGTGAATACAGAGGACGGGCGAA
CTCTCCTTCACTATGCTTTTCTCTCGGGATACGGGCTTGTGGTACGTATG
TTATTGAGAGCTGGGGCGCCTCACGAGATCAGAGACGAGGCTGGGGGCAC
CGCAATTCGATACGCCGCCCAGTCCGGAAGCGTAGATGCTGTAAAGTTGC
TGAAGGCGGGAGCAGGCACCGAAGAATCTCCGATCGATGGAAGCACCCCC
CTCATGGCTTCTGCCGAGATGGGACACCATGGTGTTGTAAAGGAGTTGCT
A
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig934:18119..18669-

>mRNA_D-mesarthrocarpus_Contig934.5.1 ID=mRNA_D-mesarthrocarpus_Contig934.5.1|Name=mRNA_D-mesarthrocarpus_Contig934.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=312bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig934:18119..18669- (Discosporangium mesarthrocarpum MT17_79)
ATGGTTCAAGAACTAGTGGGAGCTGGAGCTGATATAAGAGTGAATACAGA
GGACGGGCGAACTCTCCTTCACTATGCTTTTCTCTCGGGATACGGGCTTG
TGGTACGTATGTTATTGAGAGCTGGGGCGCCTCACGAGATCAGAGACGAG
GCTGGGGGCACCGCAATTCGATACGCCGCCCAGTCCGGAAGCGTAGATGC
TGTAAAGTTGCTGAAGGCGGGAGCAGGCACCGAAGAATCTCCGATCGATG
GAAGCACCCCCCTCATGGCTTCTGCCGAGATGGGACACCATGGTGTTGTA
AAGGAGTTGCTA
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