mRNA_D-mesarthrocarpus_Contig9294.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9294.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9294.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: A0A6H5KEG1_9PHAE (SMC hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.310e-16
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADK--FGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIRSTTRDLKNLSREQKNMQQKA 246
            AM Q+FGKKL+A +LE A   +++    MD +TM+GDE NRKG + GGY DE   +L+ LE+IR   RDL  L+ E+K MQ KA
Sbjct:  255 AMEQIFGKKLLAKDLETASKYSERKDCDMDVVTMNGDEFNRKGSISGGYHDERAGRLLTLEKIRGLRRDLDKLAAERKGMQAKA 338
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.570e-15
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADK--FGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIRSTTRDLKNLSREQKNMQQKA 246
            AM Q+FGKKL+A +LE A   +++    MD +TM+GDE NRKG + GGY DE   +L+ LE+IR   RDL  L+ E+K MQ K+
Sbjct:  639 AMEQIFGKKLLAKDLETASKYSERKECDMDVVTMNGDEFNRKGSISGGYHDERAGRLLTLEKIRGLRRDLDKLAGERKGMQAKS 722
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: A0A7S3Y4C3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4C3_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 3.530e-13
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIRSTTRDLKNLSREQKNMQQKAR 249
            AM+QVFG+KLIA N EVA   +    MD IT+DGDEVNRKG + GG+ DE  ++L  +E+ R   ++L+ +  +   M +K R
Sbjct:  197 AMLQVFGRKLIARNQEVAAHFSSLANMDAITLDGDEVNRKGAIQGGFYDERANRLAMMEKKRKADQELQPMQEKHDAMDRKVR 279
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: A0A7R9U6Y3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Y3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.410e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIRSTTRDLKNLSREQ 225
            AM +VFGKK++A N++VA   + K  MD IT+DGDEVNR+G L GG+ ++  S ++A   +R    +LK L  +Q
Sbjct:  617 AMQEVFGKKILARNMDVANEFSAKSNMDAITLDGDEVNRRGALYGGFHNQRESAILATMEVRKHRAELKTLEEKQ 691
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: A0A081CHX7_PSEA2 (Structural maintenance of chromosomes protein n=1 Tax=Pseudozyma antarctica TaxID=84753 RepID=A0A081CHX7_PSEA2)

HSP 1 Score: 69.7 bits (169), Expect = 6.200e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIR 186
            AM Q+FG+ +I PNLE+A       G++ +T+DGD+V RKG L GGYQD  RS+L A+  +R
Sbjct:  616 AMQQIFGRSIICPNLEIAAAYVRSHGVNAVTLDGDKVERKGALSGGYQDPRRSRLDAVNDVR 677
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: M9MFK2_PSEA3 (Structural maintenance of chromosome protein 3 n=1 Tax=Pseudozyma antarctica (strain T-34) TaxID=1151754 RepID=M9MFK2_PSEA3)

HSP 1 Score: 69.7 bits (169), Expect = 6.230e-12
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIR 186
            AM Q+FG+ +I PNLE+A       G++ +T+DGD+V RKG L GGYQD  RS+L A+  +R
Sbjct:  616 AMQQIFGRSIICPNLEIAAAYVRSHGVNAVTLDGDKVERKGALSGGYQDPRRSRLDAVNDVR 677
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: A0A7S4R573_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R573_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.150e-11
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIRSTTRDLKNLSREQKNMQQKA 246
            AM  VFGKKL+A N++VA   + + GMD IT++GD  +RKG + GGY D  +S++ A + +RS+    K L  ++  MQ+KA
Sbjct:  620 AMQHVFGKKLLARNVDVASTWSARCGMDAITLEGDLCSRKGAMSGGYIDLSKSRIRAHQSLRSSEERYKTLEDQRLEMQRKA 701
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: A0A5C3ELA8_9BASI (Structural maintenance of chromosomes protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3ELA8_9BASI)

HSP 1 Score: 68.9 bits (167), Expect = 1.160e-11
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIRSTTRDLKNLSREQKNMQQK 243
            A  Q+FG+ +I PNLE+A       G++ +T+DGD+V RKG L GGYQD  RS+L A+  +R     ++  + +Q+ +Q++
Sbjct:  616 AFQQIFGRSIICPNLEIASAYVRSHGINAVTLDGDKVERKGALTGGYQDPRRSRLDAVNDVRKWKTQIEQDTAKQQEVQRR 696
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: A0A7S4R7T2_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R7T2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.160e-11
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIRSTTRDLKNLSREQKNMQQKA 246
            AM  VFGKKL+A N++VA   + + GMD IT++GD  +RKG + GGY D  +S++ A + +RS+    K L  ++  MQ+KA
Sbjct:  620 AMQHVFGKKLLARNVDVASTWSARCGMDAITLEGDLCSRKGAMSGGYIDLSKSRIRAHQSLRSSEERYKTLEDQRLEMQRKA 701
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Match: A0A316W4Z2_9BASI (Structural maintenance of chromosomes protein n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A316W4Z2_9BASI)

HSP 1 Score: 68.6 bits (166), Expect = 1.580e-11
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 AMMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEGRSKLVALERIR 186
            A+ QVFGK +I PNLE+AG      G++ IT+DGD V RKG L GGY D  RS+L A+  ++
Sbjct:  620 ALQQVFGKTIICPNLEIAGAYVRSHGLNAITLDGDRVERKGSLHGGYHDPRRSRLDAVRDVK 681
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9294.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEG1_9PHAE7.310e-1651.19SMC hinge domain-containing protein n=1 Tax=Ectoca... [more]
D8LEU4_ECTSI2.570e-1550.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S3Y4C3_HETAK3.530e-1345.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U6Y3_9STRA2.410e-1245.33Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A081CHX7_PSEA26.200e-1250.00Structural maintenance of chromosomes protein n=1 ... [more]
M9MFK2_PSEA36.230e-1250.00Structural maintenance of chromosome protein 3 n=1... [more]
A0A7S4R573_9STRA1.150e-1143.90Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A5C3ELA8_9BASI1.160e-1139.51Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S4R7T2_9STRA1.160e-1143.90Structural maintenance of chromosomes protein n=1 ... [more]
A0A316W4Z2_9BASI1.580e-1151.61Structural maintenance of chromosomes protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9294contigD-mesarthrocarpus_Contig9294:835..1216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEU4
Preferred nameSMC3
PFAMsSMC_N,SMC_hinge
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000922,GO:0001736,GO:0001737,GO:0001738,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003774,GO:0003777,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007164,GO:0007275,GO:0007346,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008092,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008278,GO:0008544,GO:0009506,GO:0009507,GO:0009536,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0015630,GO:0015631,GO:0016043,GO:0016301,GO:0016310,GO:0016363,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030435,GO:0030437,GO:0030855,GO:0030892,GO:0030893,GO:0031012,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032505,GO:0032875,GO:0032876,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034293,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0034991,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035821,GO:0035825,GO:0036033,GO:0036211,GO:0040012,GO:0040017,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044788,GO:0044789,GO:0044791,GO:0044794,GO:0044877,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048468,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048563,GO:0048569,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051171,GO:0051172,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051493,GO:0051641,GO:0051702,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051817,GO:0051851,GO:0055044,GO:0060147,GO:0060236,GO:0060255,GO:0060429,GO:0060562,GO:0060966,GO:0060968,GO:0061775,GO:0061780,GO:0061982,GO:0061983,GO:0062022,GO:0062023,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0070601,GO:0070727,GO:0070840,GO:0071168,GO:0071704,GO:0071840,GO:0071921,GO:0071960,GO:0071962,GO:0072686,GO:0080090,GO:0090169,GO:0090224,GO:0090304,GO:0090329,GO:0097159,GO:0097431,GO:0098687,GO:0098727,GO:0098813,GO:0099086,GO:0120036,GO:0140013,GO:0140014,GO:0140096,GO:1900368,GO:1901360,GO:1901363,GO:1901564,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903046,GO:1903047,GO:1903900,GO:1903902,GO:1990414,GO:2000104,GO:2000112,GO:2000113
Exons2
Evalue1.92e-15
EggNOG OGsCOG1196@1|root,KOG0964@2759|Eukaryota
Ec32 ortholog descriptionsimilar to Structural maintenance of chromosome 3
Ec32 orthologEc-21_005610.1
Descriptionmaintenance of mitotic sister chromatid cohesion, centromeric
Cds size264
COG categoryD
BRITEko00000,ko00001,ko00535,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791083.5146255-CDS-D-mesarthrocarpus_Contig9294:834..10291680791083.5146255-CDS-D-mesarthrocarpus_Contig9294:834..1029Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9294 835..1029 -
1680791083.5323021-CDS-D-mesarthrocarpus_Contig9294:1144..12131680791083.5323021-CDS-D-mesarthrocarpus_Contig9294:1144..1213Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9294 1145..1213 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791083.5442104-UTR-D-mesarthrocarpus_Contig9294:1213..12161680791083.5442104-UTR-D-mesarthrocarpus_Contig9294:1213..1216Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9294 1214..1216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9294.1.1prot_D-mesarthrocarpus_Contig9294.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9294 835..1213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9294.1.1

>prot_D-mesarthrocarpus_Contig9294.1.1 ID=prot_D-mesarthrocarpus_Contig9294.1.1|Name=mRNA_D-mesarthrocarpus_Contig9294.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=88bp
MMQVFGKKLIAPNLEVAGVMADKFGMDTITMDGDEVNRKGGLCGGYQDEG
RSKLVALERIRSTTRDLKNLSREQKNMQQKARSQRFY*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9294:835..1216-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9294.1.1 ID=mRNA_D-mesarthrocarpus_Contig9294.1.1|Name=mRNA_D-mesarthrocarpus_Contig9294.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=382bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9294:835..1216- (Discosporangium mesarthrocarpum MT17_79)
GCAATGATGCAGGTGTTCGGGAAGAAGCTCATTGCCCCAAACCTGGAGGT
CGCAGGCGTTATGGCAGACAAGGTGAGGATAGTTGGGCCTGAGAAACAAG
CCACTCAGAAGGATGCGCAAAGTGTGACAATATCTAATCCTAACCCTGAA
CTTCAACCATTCTGTTAATATTTATTTAAAACAACAGTTTGGCATGGATA
CAATCACCATGGATGGCGATGAGGTCAACCGAAAAGGGGGGCTCTGTGGC
GGCTACCAGGATGAGGGTAGAAGCAAACTGGTTGCCCTGGAACGTATCCG
CTCTACAACCAGGGACCTTAAGAACCTGTCCAGGGAACAGAAGAACATGC
AGCAGAAGGCAAGGAGCCAAAGATTCTACTGA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9294:835..1216-

>mRNA_D-mesarthrocarpus_Contig9294.1.1 ID=mRNA_D-mesarthrocarpus_Contig9294.1.1|Name=mRNA_D-mesarthrocarpus_Contig9294.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=264bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9294:835..1216- (Discosporangium mesarthrocarpum MT17_79)
ATGATGCAGGTGTTCGGGAAGAAGCTCATTGCCCCAAACCTGGAGGTCGC
AGGCGTTATGGCAGACAAGTTTGGCATGGATACAATCACCATGGATGGCG
ATGAGGTCAACCGAAAAGGGGGGCTCTGTGGCGGCTACCAGGATGAGGGT
AGAAGCAAACTGGTTGCCCTGGAACGTATCCGCTCTACAACCAGGGACCT
TAAGAACCTGTCCAGGGAACAGAAGAACATGCAGCAGAAGGCAAGGAGCC
AAAGATTCTACTGA
back to top