mRNA_D-mesarthrocarpus_Contig9291.1.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9291.1.2
Unique NamemRNA_D-mesarthrocarpus_Contig9291.1.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A3S3N968_9MAGN (Putative cytochrome c biosynthesis protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3N968_9MAGN)

HSP 1 Score: 224 bits (571), Expect = 1.940e-71
Identity = 131/207 (63.29%), Postives = 145/207 (70.05%), Query Frame = 2
Query:   14 CAGPRQFL*VSLLRAYFRLSVSVMAQ*SAFAIGGLSNIYAFHRSTGNSLYPYHSLVY*LNKPPTDALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLKYKTFVRLACVKHTASVHPEPGSNS 634
            C  P   L   L    FRLSVSV AQ  AFA+G LS++YAFHRSTGNSL PYH                    N CIL LTAAAGTELADAYSS  V  SS  KEV++P AF+ HA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+AL  FP+V+P  +  S+ALLTRPPL+    VRLACV+H ASVHPEPGSNS
Sbjct:    6 CGPPSIPLSFILANLSFRLSVSVSAQQGAFAVGVLSDLYAFHRSTGNSLCPYH--------------------NACILCLTAAAGTELADAYSSDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALP-FPVVVPLPRAGSYALLTRPPLETPLPVRLACVRHAASVHPEPGSNS 191          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A834FX08_RHOSS (Uncharacterized protein n=3 Tax=asterids TaxID=71274 RepID=A0A834FX08_RHOSS)

HSP 1 Score: 204 bits (519), Expect = 4.550e-64
Identity = 111/149 (74.50%), Postives = 121/149 (81.21%), Query Frame = 2
Query:  188 LNKPPTDALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLKYKTFVRLACVKHTASVHPEPGSNS 634
            L KPPTDALRP+IPDN CIL LTAAAGTELADAYS  NV  SS  KEVY+P AF+ HA LL QAFAHC +F TAASRRSL RVSVPVWLIILS+QLLI+AL  FP V+P  +  S+ALLTRPPL+    VRLACVKH ASVHPEPGSNS
Sbjct:    7 LKKPPTDALRPIIPDNACILCLTAAAGTELADAYSPDNVIASSPGKEVYDPWAFYLHAALLRQAFAHCGRFRTAASRRSLGRVSVPVWLIILSDQLLIIALP-FPAVVPLPRAGSYALLTRPPLETPLPVRLACVKHAASVHPEPGSNS 154          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: M1BT56_SOLTU (Unknow protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1BT56_SOLTU)

HSP 1 Score: 203 bits (517), Expect = 1.760e-63
Identity = 112/152 (73.68%), Postives = 124/152 (81.58%), Query Frame = 2
Query:  188 LNKPPTDALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLK--YKTF-VRLACVKHTASVHPEPGSNS 634
            L KPPTDALRP+I DNTCIL +TAAAGTELADAYSS  V  SS  KEV++P AF+ H  LL QAFAHCRKFPTAASRRSL RVSVPVWLIILS+QLLI+AL  FP V+P  +  S+ALLTRPPL+  +  F VRLACVKH ASVHPEPGSNS
Sbjct:   24 LEKPPTDALRPIISDNTCILYITAAAGTELADAYSSDTVIASSPGKEVHDPWAFYLHTTLLLQAFAHCRKFPTAASRRSLGRVSVPVWLIILSDQLLIIALP-FPAVVPLPRAGSYALLTRPPLETPFPVFPVRLACVKHAASVHPEPGSNS 174          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A8J5H5C1_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5H5C1_ZINOF)

HSP 1 Score: 199 bits (507), Expect = 2.430e-61
Identity = 119/189 (62.96%), Postives = 135/189 (71.43%), Query Frame = 2
Query:   68 LSVSVMAQ*SAFAIGGLSNIYAFHRSTGNSLYPYHSLVY*LNKPPTDALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLKYKTFVRLACVKHTASVHPEPGSNS 634
            +S  V AQ SAFA+G LS++YAFHRSTGNSL PYH            ALRP+IPDN CIL LTAAAGTELADAYSS  V  SS  KEV++P AF+ HA LL QAFAHC KFPTAASRRSL RVSVPVWL ILS+QLLI+AL         ++V S+ALLTR PL+    VRL+CVKH AS    PG +S
Sbjct:    1 MSSPVSAQQSAFAVGVLSDLYAFHRSTGNSLCPYH------------ALRPIIPDNACILCLTAAAGTELADAYSSDTVIASSPRKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLNILSDQLLIIAL---------VRVGSYALLTRSPLETPLPVRLSCVKHAAS----PGVHS 164          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A6L2M4J0_TANCI (Uncharacterized protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2M4J0_TANCI)

HSP 1 Score: 199 bits (505), Expect = 1.050e-59
Identity = 108/154 (70.13%), Postives = 120/154 (77.92%), Query Frame = 2
Query:  173 SLVY*LNKPPTDALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLKYKTFVRLACVKHTASVHPEPGSNS 634
            SL+     PPTDALRP+IPDN CIL +TAA GTELADAYS   V  SS  K+VY+P AF+ HA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+AL  FP V+P  +  S+ LLTRPPL+    VRLACVKH ASVHPEPGSNS
Sbjct:  170 SLIIPKPNPPTDALRPIIPDNACILCITAATGTELADAYSPDTVIASSPGKDVYDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALP-FPAVVPLPRAGSYTLLTRPPLETPLPVRLACVKHAASVHPEPGSNS 322          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A162A9Q8_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162A9Q8_DAUCS)

HSP 1 Score: 193 bits (490), Expect = 1.750e-57
Identity = 105/143 (73.43%), Postives = 116/143 (81.12%), Query Frame = 2
Query:  206 DALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLKYKTFVRLACVKHTASVHPEPGSNS 634
            DALRP+IPDN CIL +TAAAGTELADAYS   V  SS  KEV++P AF+ HA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+AL  FP V+P  +  S+ALLTRPPL+    VRLACVKH ASVHPEPGSNS
Sbjct:  178 DALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALP-FPAVVPLPRAGSYALLTRPPLETPLPVRLACVKHAASVHPEPGSNS 319          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A2G3BUH6_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BUH6_CAPCH)

HSP 1 Score: 191 bits (484), Expect = 4.620e-57
Identity = 103/152 (67.76%), Postives = 119/152 (78.29%), Query Frame = 2
Query:  188 LNKPPTDALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLK--YKTF-VRLACVKHTASVHPEPGSNS 634
            L KPP DALRP+I DN  I+ +TA AGTELADAYS   +  SS +KEV++P AF+ HA LL QAFAHCRKFPT AS RSL  VSVPVWLIILS+QLLI+AL+ FP V+P  +  S+ALLTRPPL+  +  F VRLACVKH ASVHPEPGSNS
Sbjct:  129 LKKPPIDALRPIILDNAYIICITATAGTELADAYSPDTITASSPSKEVHDPWAFYLHAALLHQAFAHCRKFPTDASHRSLGSVSVPVWLIILSDQLLIIALEPFPAVVPLPRAGSYALLTRPPLETPFPVFPVRLACVKHAASVHPEPGSNS 280          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A5N6NM02_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NM02_9ASTR)

HSP 1 Score: 193 bits (490), Expect = 7.200e-57
Identity = 105/143 (73.43%), Postives = 116/143 (81.12%), Query Frame = 2
Query:  206 DALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLKYKTFVRLACVKHTASVHPEPGSNS 634
            DALRP+IPDN CIL +TAAAGTELADAYS   V  SS  KEV++P AF+ HA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+AL  FP V+P  +  S+ALLTRPPL+    VRLACVKH ASVHPEPGSNS
Sbjct:  231 DALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALP-FPAVVPLPRAGSYALLTRPPLETPLPVRLACVKHAASVHPEPGSNS 372          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A5N6PVU4_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PVU4_9ASTR)

HSP 1 Score: 193 bits (490), Expect = 4.560e-55
Identity = 105/143 (73.43%), Postives = 116/143 (81.12%), Query Frame = 2
Query:  206 DALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQSFPIVIPHLKVNSHALLTRPPLKYKTFVRLACVKHTASVHPEPGSNS 634
            DALRP+IPDN CIL +TAAAGTELADAYS   V  SS  KEV++P AF+ HA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+AL  FP V+P  +  S+ALLTRPPL+    VRLACVKH ASVHPEPGSNS
Sbjct:  422 DALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALP-FPAVVPLPRAGSYALLTRPPLETPLPVRLACVKHAASVHPEPGSNS 563          
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Match: A0A6L2P7F0_TANCI (Carotenoid cleavage dioxygenase 1 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P7F0_TANCI)

HSP 1 Score: 186 bits (472), Expect = 1.320e-54
Identity = 104/145 (71.72%), Postives = 113/145 (77.93%), Query Frame = 2
Query:   62 FRLSVSVMAQ*SAFAIGGLSNIYAFHRSTGNSLYPYHSLVY*LNKPPTDALRPVIPDNTCILRLTAAAGTELADAYSSSNVRTSSLTKEVYNPKAFFPHAVLLCQAFAHCRKFPTAASRRSLDRVSVPVWLIILSNQLLIVALQS 496
            FRLSVSV AQ SAFA+G LS++YAFHRSTGNSL PYH            ALRP+IPDN CIL +TAAAGTELADAYS   V  SS  KEVY+P AF+ HA LL QAFAHC KFPTAASRRSL RVSVPVWLIILS+QLLI+AL S
Sbjct:   19 FRLSVSVSAQQSAFAVGVLSDLYAFHRSTGNSLCPYH------------ALRPIIPDNACILCITAAAGTELADAYSPDTVIASSPGKEVYDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALDS 151          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9291.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3S3N968_9MAGN1.940e-7163.29Putative cytochrome c biosynthesis protein n=1 Tax... [more]
A0A834FX08_RHOSS4.550e-6474.50Uncharacterized protein n=3 Tax=asterids TaxID=712... [more]
M1BT56_SOLTU1.760e-6373.68Unknow protein n=1 Tax=Solanum tuberosum TaxID=411... [more]
A0A8J5H5C1_ZINOF2.430e-6162.96Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A6L2M4J0_TANCI1.050e-5970.13Uncharacterized protein n=1 Tax=Tanacetum cinerari... [more]
A0A162A9Q8_DAUCS1.750e-5773.43Uncharacterized protein n=2 Tax=Daucus carota subs... [more]
A0A2G3BUH6_CAPCH4.620e-5767.76Uncharacterized protein n=1 Tax=Capsicum chinense ... [more]
A0A5N6NM02_9ASTR7.200e-5773.43Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A5N6PVU4_9ASTR4.560e-5573.43Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6L2P7F0_TANCI1.320e-5471.72Carotenoid cleavage dioxygenase 1 n=1 Tax=Tanacetu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9291contigD-mesarthrocarpus_Contig9291:4017..4909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1125701.HMPREF1221_00764
Model size634
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000297
EggNOG OGs2DPM9@1|root,332MQ@2|Bacteria
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791083.0731423-CDS-D-mesarthrocarpus_Contig9291:4016..40761680791083.0731423-CDS-D-mesarthrocarpus_Contig9291:4016..4076Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9291 4017..4076 +
1680791083.085234-CDS-D-mesarthrocarpus_Contig9291:4198..43241680791083.085234-CDS-D-mesarthrocarpus_Contig9291:4198..4324Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9291 4199..4324 +
1680791083.0977073-CDS-D-mesarthrocarpus_Contig9291:4369..43751680791083.0977073-CDS-D-mesarthrocarpus_Contig9291:4369..4375Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9291 4370..4375 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791083.1098995-UTR-D-mesarthrocarpus_Contig9291:4375..46731680791083.1098995-UTR-D-mesarthrocarpus_Contig9291:4375..4673Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9291 4376..4673 +
1680791083.1252835-UTR-D-mesarthrocarpus_Contig9291:4765..49091680791083.1252835-UTR-D-mesarthrocarpus_Contig9291:4765..4909Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9291 4766..4909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9291.1.2prot_D-mesarthrocarpus_Contig9291.1.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9291 4017..4375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9291.1.2

>prot_D-mesarthrocarpus_Contig9291.1.2 ID=prot_D-mesarthrocarpus_Contig9291.1.2|Name=mRNA_D-mesarthrocarpus_Contig9291.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=64bp
MLHRLCGSPSIPLSFTLASILSSLSVSNGPVECLRHWWSFQYLRISPLHW
KFPLPLPFSSLLT*
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mRNA from alignment at D-mesarthrocarpus_Contig9291:4017..4909+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9291.1.2 ID=mRNA_D-mesarthrocarpus_Contig9291.1.2|Name=mRNA_D-mesarthrocarpus_Contig9291.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=893bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9291:4017..4909+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCACTCT TGCGAGCATAGTTCCCAGGCGGGATACTTAACGCGTTAGCTACGATACTG CATGGATCGATACACGCAACATCTAGTATCCATCGTTTACGGCTAGGACT ACTGGGGTATCTAATCCCATTTGCTCCCCTAGCTTTCGTCTCTCAGTGTC AGTAATGGCCCAGTAGAGTGCCTTCGCCATTGGTGGTCTTTCCAATATCT ACGCATTTCACCGCTCCACTGGAAATTCCCTCTACCCCTACCATTCTCTA GTCTACTAGTTTCTATTATAGGTTTGAAGTTAAGCTTCAAGATTTGATAA TAGACTTAATAAACCACCTACAGACGCTTTACGCCCAGTGATTCCGGATA ACACTTGCATCCTCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGAT GCTTATTCGTCAAGTAACGTCAGAACTTCCTCCTTGACAAAAGAGGTTTA CAACCCGAAGGCCTTTTTCCCTCACGCGGTATTGCTCTGTCAGGCTTTCG CCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT GTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGATCGT CGCCTTGGTAGGCCATTACCCTACCAACTAGCTAATCAGACGCAAGCTTT TCTTTAGGCGGATTTCTCCTTTGACTATTATAGTATTATGCGGCATTAGC AATCGTTTCCAATTGTTATTCCCCACCTAAAGGTAAATTCTCACGCGTTA CTCACCCGTCCGCCACTAAAGTATAAAACTTTCGTTCGACTTGCATGTGT AAAGCATACCGCCAGCGTTCATCCTGAGCCAGGATCAAACTCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9291:4017..4909+

>mRNA_D-mesarthrocarpus_Contig9291.1.2 ID=mRNA_D-mesarthrocarpus_Contig9291.1.2|Name=mRNA_D-mesarthrocarpus_Contig9291.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=192bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9291:4017..4909+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTCCACCGCTTGTGCGGGTCCCCGTCAATTCCTTTGAGTTTCACTCT
TGCGAGCATACTTTCGTCTCTCAGTGTCAGTAATGGCCCAGTAGAGTGCC
TTCGCCATTGGTGGTCTTTCCAATATCTACGCATTTCACCGCTCCACTGG
AAATTCCCTCTACCCCTACCATTCTCTAGTCTACTAACTTAA
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