mRNA_D-mesarthrocarpus_Contig9290.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig9290.1.1
Unique Name	mRNA_D-mesarthrocarpus_Contig9290.1.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: A0A6H5KES1_9PHAE (Epimerase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KES1_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.500e-32
Identity = 58/70 (82.86%), Postives = 67/70 (95.71%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HDVI+VDNLSRR+IDLELGCESLTPIQSPQTRVK WKE+ GRE+K+VNIDVAKEY+LLL+LFK+ KPD+V
Sbjct:  112 HDVIMVDNLSRRRIDLELGCESLTPIQSPQTRVKTWKEVTGREIKYVNIDVAKEYELLLKLFKEHKPDTV 181

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: A0A1E7FH02_9STRA (Putative plastid UDP-sulfoquinovose synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH02_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.150e-30
Identity = 54/70 (77.14%), Postives = 65/70 (92.86%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HDV++VDNLSRRKIDL+LGC+SLTPI SP+TRV+ WKE+ G+E+KF NIDVAKEYDLL+QL KDEKPDS+
Sbjct:   72 HDVVIVDNLSRRKIDLDLGCDSLTPISSPETRVQAWKEVSGKEIKFHNIDVAKEYDLLVQLIKDEKPDSI 141

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: B8C7K5_THAPS (Sulfolipid biosynthesis protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7K5_THAPS)

HSP 1 Score: 119 bits (297), Expect = 4.330e-30
Identity = 53/70 (75.71%), Postives = 64/70 (91.43%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HDV++VDNLSRR ID+ELGC+SLTPIQSP  RV+ WKE+ G+EMKFVN+DVAKEYDLL+QL K+EKPDS+
Sbjct:   85 HDVVMVDNLSRRNIDVELGCDSLTPIQSPDVRVQAWKEVSGKEMKFVNLDVAKEYDLLVQLIKEEKPDSI 154

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: L1I739_GUITC (Epimerase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I739_GUITC)

HSP 1 Score: 113 bits (283), Expect = 7.200e-29
Identity = 50/70 (71.43%), Postives = 63/70 (90.00%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HDV++VDNLSRR ID+E+GC+SLTPIQ P+ R+K W+E+ GR M+FVN+DVAKEYDLL+QLFK EKPD+V
Sbjct:  103 HDVVVVDNLSRRNIDIEMGCDSLTPIQHPEIRLKAWEEVGGRAMRFVNLDVAKEYDLLVQLFKQEKPDAV 172

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: A0A7S1BMK8_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMK8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.230e-28
Identity = 50/70 (71.43%), Postives = 63/70 (90.00%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HD+++VDNLSRR ID ELGC+SLTPIQ P+ RVK WKE+ G++MKFVN+DVAK+YDLL+QL KDE+PDS+
Sbjct:   92 HDIVIVDNLSRRNIDNELGCDSLTPIQPPEVRVKAWKEVSGKDMKFVNLDVAKDYDLLVQLIKDEQPDSI 161

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: A0A7S3V8N9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8N9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.310e-28
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HDV++VDNLSRR ID ELGC SLTPIQSP+ RV+ WKE+ G+++KFVN+DVAKEYDLL+QL KDE+PD+V
Sbjct:  121 HDVVMVDNLSRRNIDTELGCSSLTPIQSPEVRVEAWKEVSGKDIKFVNLDVAKEYDLLVQLIKDEQPDAV 190

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: A0A6U3UIB3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UIB3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.820e-28
Identity = 50/70 (71.43%), Postives = 63/70 (90.00%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HDV++VDNLSRR ID ELGC+SLTPIQSP  RV+ WKE+ G+++KFVN+DVAKEYDLL+QL K+E+PDS+
Sbjct:   76 HDVVIVDNLSRRNIDTELGCDSLTPIQSPSVRVQAWKEVSGKDIKFVNLDVAKEYDLLVQLIKEEQPDSI 145

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: A0A7S4N1Z5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1Z5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.450e-28
Identity = 49/70 (70.00%), Postives = 63/70 (90.00%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HD+++VDNLSRR ID ELGC+SLTPIQSP+ RV+ WKE  G+++KFVN+DVAK+YDLL+QL K+EKPDS+
Sbjct:   88 HDIVIVDNLSRRNIDTELGCDSLTPIQSPELRVQAWKEATGKDIKFVNLDVAKDYDLLVQLIKEEKPDSI 157

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: A0A7S4U6C5_GUITH (Hypothetical protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S4U6C5_GUITH)

HSP 1 Score: 113 bits (283), Expect = 5.700e-28
Identity = 50/70 (71.43%), Postives = 63/70 (90.00%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HDV++VDNLSRR ID+E+GC+SLTPIQ P+ R+K W+E+ GR M+FVN+DVAKEYDLL+QLFK EKPD+V
Sbjct:  108 HDVVVVDNLSRRNIDIEMGCDSLTPIQHPEIRLKAWEEVGGRAMRFVNLDVAKEYDLLVQLFKQEKPDAV 177

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BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Match: A0A448ZIZ1_9STRA (Epimerase domain-containing protein n=3 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZIZ1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.770e-28
Identity = 49/70 (70.00%), Postives = 64/70 (91.43%), Query Frame = 1

Query:    1 HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNIDVAKEYDLLLQLFKDEKPDSV 210
            HDV++VDNLSRRKIDL+LGC+SLTPI SP+TRV+ WKE+ G+++ F N+DVAK+YDLL+QL KDE+PDS+
Sbjct:   72 HDVVIVDNLSRRKIDLDLGCDSLTPISSPETRVQAWKEVTGKDIPFHNLDVAKDYDLLVQLIKDEQPDSI 141

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig9290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KES1_9PHAE	4.500e-32	82.86	Epimerase domain-containing protein n=2 Tax=Ectoca...	[more]
A0A1E7FH02_9STRA	2.150e-30	77.14	Putative plastid UDP-sulfoquinovose synthase n=1 T...	[more]
B8C7K5_THAPS	4.330e-30	75.71	Sulfolipid biosynthesis protein n=1 Tax=Thalassios...	[more]
L1I739_GUITC	7.200e-29	71.43	Epimerase domain-containing protein n=1 Tax=Guilla...	[more]
A0A7S1BMK8_9STRA	1.230e-28	71.43	Hypothetical protein n=2 Tax=Corethron hystrix Tax...	[more]
A0A7S3V8N9_9STRA	2.310e-28	72.86	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A6U3UIB3_9STRA	2.820e-28	71.43	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7S4N1Z5_9STRA	4.450e-28	70.00	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7S4U6C5_GUITH	5.700e-28	71.43	Hypothetical protein n=2 Tax=Geminigeraceae TaxID=...	[more]
A0A448ZIZ1_9STRA	7.770e-28	70.00	Epimerase domain-containing protein n=3 Tax=Pseudo...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-mesarthrocarpus_Contig9290	contig	D-mesarthrocarpus_Contig9290:707..1637 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D8LSQ1
Preferred name	SQD1
PFAMs	Aldose_epim,Epimerase
Model size	210
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00563,RC01469
KEGG ko	ko:K01785,ko:K06118
KEGG Reaction	R01602,R05775,R10619
KEGG Pathway	ko00010,ko00052,ko00520,ko00561,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map00520,map00561,map01100,map01110,map01120,map01130
KEGG Module	M00632
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006643,GO:0006664,GO:0006950,GO:0007154,GO:0008146,GO:0008150,GO:0008152,GO:0008270,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016782,GO:0019899,GO:0019904,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042594,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0101016,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Exons	2
Evalue	7.58e-33
EggNOG OGs	COG1087@1\|root,KOG1371@2759\|Eukaryota
Ec32 ortholog description	UDP-sulfoquinovose synthase, plastid precursor
Ec32 ortholog	Ec-15_003040.1
EC	3.13.1.1,5.1.3.3
Description	racemase and epimerase activity, acting on carbohydrates and derivatives
Cds size	210
COG category	M
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791082.9191704-CDS-D-mesarthrocarpus_Contig9290:706..808	1680791082.9191704-CDS-D-mesarthrocarpus_Contig9290:706..808	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig9290 707..808 +
1680791082.934963-CDS-D-mesarthrocarpus_Contig9290:1529..1637	1680791082.934963-CDS-D-mesarthrocarpus_Contig9290:1529..1637	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig9290 1530..1637 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig9290.1.1	prot_D-mesarthrocarpus_Contig9290.1.1	Discosporangium mesarthrocarpum MT17_79	polypeptide	D-mesarthrocarpus_Contig9290 707..1637 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig9290:707..1637+
coding sequence from alignment at D-mesarthrocarpus_Contig9290:707..1637+

protein sequence of mRNA_D-mesarthrocarpus_Contig9290.1.1

>prot_D-mesarthrocarpus_Contig9290.1.1 ID=prot_D-mesarthrocarpus_Contig9290.1.1|Name=mRNA_D-mesarthrocarpus_Contig9290.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=70bp
HDVILVDNLSRRKIDLELGCESLTPIQSPQTRVKVWKELRGREMKFVNID
VAKEYDLLLQLFKDEKPDSV

mRNA from alignment at D-mesarthrocarpus_Contig9290:707..1637+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig9290.1.1 ID=mRNA_D-mesarthrocarpus_Contig9290.1.1|Name=mRNA_D-mesarthrocarpus_Contig9290.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=931bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9290:707..1637+ (Discosporangium mesarthrocarpum MT17_79)
CATGACGTGATCCTTGTCGACAACCTCAGCCGGAGGAAGATTGACCTGGA
GCTAGGCTGCGAGTCTCTGACCCCAATTCAGAGCCCCCAGACAAGAGTGA
AGGTTAGGGTTAAGGAGGGACCCTTTACGCTTTTTGCGCTTGCTTGACCG
AGATAGTTAGGGTTAGGGTTAAGGTTAAGGTTGAAGGTGGTCCCCTGTGC
TGTTTTACGCCAGCCCCAACTGAGATGTTCGGATGGGTTAGGGTGTCAAG
GTTTCAGCATGCTTTTTTTTTTGCTCTTTGCACTAGAAACGTGCTGGAGA
ACGTGAGGGTTAGGGTTAGGGTGAAGGAAATTCGGCATGACCTTTTCCCT
TGTAAGAGTTGCCGCATGATGTCCTGTTTGGCTGTAGTTCTAAAGACATT
GAGCGAAACTGTATGCCTTGGGGATTAGGGTTGGAGAACGAGACATGTGT
TGGAATAACGACAGTACATGTAGGAAGATGGCTGTGTGGGTTAGGGTTAG
GGTTAGGGTTAGGGTTAGGGTTAGGGTGAGGCTTGTGAACATAGTACCTG
CAGCCCTATCCGAAGATGTCCTTAATTCAGCGAAGGCTTCTCTTTAAGAC
TCTTGATTCGACCCTTGTCTTTTTTTTTTTCACAACATGATGTCAGCAAG
GAGCTGATTGGGTGGGAGATGAAGATTGCGGGCAGTAGCGCTGTGACCCC
AGCGTGCATGTGACCCTAAGTGAATTTTTTTTTTTTCGACCCCTTGATGG
TGAGACCCCTTCCCTCTTCTTGTTGTCATCCTCACAATGATAGTAAACAA
TGCAAAAAACACACACAACACAGGTCTGGAAGGAGCTGCGTGGAAGGGAG
ATGAAGTTTGTCAACATTGATGTGGCTAAGGAGTATGACCTCCTCCTGCA
GCTCTTTAAGGATGAAAAGCCGGACTCGGTG

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9290:707..1637+

>mRNA_D-mesarthrocarpus_Contig9290.1.1 ID=mRNA_D-mesarthrocarpus_Contig9290.1.1|Name=mRNA_D-mesarthrocarpus_Contig9290.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=210bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9290:707..1637+ (Discosporangium mesarthrocarpum MT17_79)
CATGACGTGATCCTTGTCGACAACCTCAGCCGGAGGAAGATTGACCTGGA
GCTAGGCTGCGAGTCTCTGACCCCAATTCAGAGCCCCCAGACAAGAGTGA
AGGTCTGGAAGGAGCTGCGTGGAAGGGAGATGAAGTTTGTCAACATTGAT
GTGGCTAAGGAGTATGACCTCCTCCTGCAGCTCTTTAAGGATGAAAAGCC
GGACTCGGTG