mRNA_D-mesarthrocarpus_Contig9280.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9280.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9280.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9280.2.1 vs. uniprot
Match: A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.190e-5
Identity = 38/71 (53.52%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:  769 EQRKVKMHSADASADNEVCAILSSP----KYVVKPQPRPGGVGDKARIGPASPRANGSHVGVGMLGATTAG 969
            EQ + +    DASAD EV AILSSP    K+VVKPQPRPGG        PASP ANG+   V    ATT G
Sbjct:    3 EQHQHQQQGGDASADKEVMAILSSPVQQKKFVVKPQPRPGGAI------PASPAANGNAAFVPPASATTLG 67
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9280.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNA0_9PHAE3.190e-553.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9280contigD-mesarthrocarpus_Contig9280:2389..3809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1029
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791082.0628846-CDS-D-mesarthrocarpus_Contig9280:2388..26311680791082.0628846-CDS-D-mesarthrocarpus_Contig9280:2388..2631Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9280 2389..2631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791082.0784702-UTR-D-mesarthrocarpus_Contig9280:2631..29111680791082.0784702-UTR-D-mesarthrocarpus_Contig9280:2631..2911Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9280 2632..2911 -
1680791082.0901344-UTR-D-mesarthrocarpus_Contig9280:3303..38091680791082.0901344-UTR-D-mesarthrocarpus_Contig9280:3303..3809Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9280 3304..3809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9280.2.1prot_D-mesarthrocarpus_Contig9280.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9280 2389..2631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9280.2.1

>prot_D-mesarthrocarpus_Contig9280.2.1 ID=prot_D-mesarthrocarpus_Contig9280.2.1|Name=mRNA_D-mesarthrocarpus_Contig9280.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=81bp
MHSADASADNEVCAILSSPKYVVKPQPRPGGVGDKARIGPASPRANGSHV
GVGMLGATTAGVAGAGGAGSGVGGSGNRDMV
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mRNA from alignment at D-mesarthrocarpus_Contig9280:2389..3809-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9280.2.1 ID=mRNA_D-mesarthrocarpus_Contig9280.2.1|Name=mRNA_D-mesarthrocarpus_Contig9280.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1421bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9280:2389..3809- (Discosporangium mesarthrocarpum MT17_79)
CATCGGTGAGTTGTATGCCCAGTGGGTAGTGGTAATATGGTCAAAGAACG
CACAGAGACAACACTATTCTAATTAGTTGATCCCTTTCACGGAGTGTCTC
ATGATTCCCGAAAGAACGGGACAACTTATTTGTAAAACGCGTTTTGGGGG
GTCTCCAGGTTTCCACGAAATAACTTTTGACTAACCCTAACACTACACTT
GCCAACGGCCTCTGAGGGAGTTACTAACACACATCTCCTTCTTGCCTGAC
TACTCGCAACCTCAACGAAGCACCCATCAACAGACTGGTGTGTCCTTGAA
CAGTGCTCTTGTTCTTGTCGATGGAATCATCGTCATTTTTTCCATTGTAT
TTGCTGTAAGTGATGTAAGGAGTGGTGATTCTTGTGTGTGAGGTGGGGTG
GAGGAGCAGATTGGCCATGCCGCGGAAAACTCGAGGGTGCCGTTATAACC
TATGAGCATGGTGGGAACTAGGTCCGGGAGTAGATTTTAAGCAGTCGGCG
AGATGAGTGAGTAGTAAAAATGTCTAGCTGAAAGTTGGTGCGGATCGAGC
TAAGCGCGAGGTTTCTGGGAGAGGGTGGGTGTAGGGTAAGATGCTTGCGA
AATGAACTCGTGCCACGAAGGTACAATTGGGAATTAGGGGTCATAAGTAT
CGTGGGAGAGATTCTTGGAGGATACTTGACTTGTTCCTGAGCGGTGGTGG
TCATCTGAACGCCGTCAGCGTGCAGATCGGTTAGGTTTGAATTTGGAGGC
GGGGAGGAGAGACTTTAGTCATCCCATGGATTGGCAACGAATCAAACTTT
ACGCCGGGAGGGGTAGTGATCCGTACGTGCGTTAGTCGCGCCGTAAGTAC
TGCACTTTGGTCCTGATCCTAGTTTTGCTGATTGTTTAAATTTCACAGGT
GAGCGGGGCCCCCTTGACCTCCAACGGTGACTCCAACCGTGGTCAGGGGA
GCGTAAGGTGCGACGGATCGGGTGGGGAGAAAGGCATGATGCCCGGACGC
TCGAACGGCAGCTGGATGGACAAGGGATAAAGCGGACACTACGCGACAAA
AAGGCCGCAGGTATCCTCGAGATATCCTTTCGCGCGGCCACGTGTGGTGA
GCGAGATCCCTGCTTCGGCGGACGCGTTGCAAAGCGTGGCTCTAAGAGAG
GGCCAGGCGCGAACAGCGTAAAGTCAAAATGCATTCTGCGGATGCCTCGG
CGGATAACGAGGTATGCGCGATCCTCTCCAGCCCCAAGTATGTCGTGAAA
CCACAGCCTAGGCCTGGGGGGGTGGGGGATAAGGCCAGGATCGGCCCCGC
ATCTCCGAGGGCAAACGGCTCCCACGTCGGAGTGGGCATGCTCGGGGCGA
CAACGGCCGGTGTCGCCGGTGCCGGTGGGGCAGGCAGCGGGGTTGGCGGG
TCTGGGAACAGAGACATGGTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9280:2389..3809-

>mRNA_D-mesarthrocarpus_Contig9280.2.1 ID=mRNA_D-mesarthrocarpus_Contig9280.2.1|Name=mRNA_D-mesarthrocarpus_Contig9280.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=243bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9280:2389..3809- (Discosporangium mesarthrocarpum MT17_79)
ATGCATTCTGCGGATGCCTCGGCGGATAACGAGGTATGCGCGATCCTCTC
CAGCCCCAAGTATGTCGTGAAACCACAGCCTAGGCCTGGGGGGGTGGGGG
ATAAGGCCAGGATCGGCCCCGCATCTCCGAGGGCAAACGGCTCCCACGTC
GGAGTGGGCATGCTCGGGGCGACAACGGCCGGTGTCGCCGGTGCCGGTGG
GGCAGGCAGCGGGGTTGGCGGGTCTGGGAACAGAGACATGGTT
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