mRNA_D-mesarthrocarpus_Contig9280.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9280.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9280.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9280.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9280contigD-mesarthrocarpus_Contig9280:862..2238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size799
Hectar predicted targeting categoryother localisation
Exons3
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791081.974259-UTR-D-mesarthrocarpus_Contig9280:861..8711680791081.974259-UTR-D-mesarthrocarpus_Contig9280:861..871Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9280 862..871 -
1680791082.0096383-UTR-D-mesarthrocarpus_Contig9280:1302..15211680791082.0096383-UTR-D-mesarthrocarpus_Contig9280:1302..1521Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9280 1303..1521 -
1680791082.0255063-UTR-D-mesarthrocarpus_Contig9280:2088..22381680791082.0255063-UTR-D-mesarthrocarpus_Contig9280:2088..2238Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9280 2089..2238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791081.9877665-CDS-D-mesarthrocarpus_Contig9280:871..9441680791081.9877665-CDS-D-mesarthrocarpus_Contig9280:871..944Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9280 872..944 -
1680791081.9989607-CDS-D-mesarthrocarpus_Contig9280:955..13021680791081.9989607-CDS-D-mesarthrocarpus_Contig9280:955..1302Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9280 956..1302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9280.1.1prot_D-mesarthrocarpus_Contig9280.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9280 872..1302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9280.1.1

>prot_D-mesarthrocarpus_Contig9280.1.1 ID=prot_D-mesarthrocarpus_Contig9280.1.1|Name=mRNA_D-mesarthrocarpus_Contig9280.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=140bp
MTVAQEQEPHQGEAYGYGGFEGAPFTPQSGPLGPGDRGMDSGLLDTSPSQ
PLASPPLASQAGVPSSKDGGGGGSVGQYSSSADWVMMRYGLTLSTPVSGQ
MHEEGPRPDRGPPGQGAGARAGAGRGLFQHGVDAGRAQP*
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mRNA from alignment at D-mesarthrocarpus_Contig9280:862..2238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9280.1.1 ID=mRNA_D-mesarthrocarpus_Contig9280.1.1|Name=mRNA_D-mesarthrocarpus_Contig9280.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1377bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9280:862..2238- (Discosporangium mesarthrocarpum MT17_79)
TCCGGCAGCAGTGTGGGGCTAGGGGGGAGGGGGAGTGGTCAGCAGGGGCT
TGGGAGGGGGGCGGAAAATGGTGGAATTGGTTCGGTGGACCTTGGAAGTT
TCAGGGTGTTAGGAGGAGATGGGCTGGTTGAGGGATCTACCGGGTTTCAG
GTGCGGGGGAGAGGGAAAAGCGGGCACGGGGAGAGTTGCTCCTGATTTTT
TTTTTTGGGGTGGGGGGAGGGGAGGTCATGGTGAGGTTGAGGTTGAGGTT
GAGGTTGAGGTTGAGGTTGACGTTTGGGGTGGACTCTTTAAGTCTTGGGT
CCTGGAGTCTGTTGTGGTTACCACGGAATCTTGCTCTTGGATCTTTGATG
TAACAGGTCCATCGTTGAAAGATCTGGATTGCTGTGAGAGGCATGTCTTT
ACCGTGAAATACATCTGTCGGAAGTCATCGCTTCAAACGTGCTGCGGTCA
CGGCTAACGCAGCTGCATACAGTGACCTTTATGCTACTCTGTACGGTACG
CTGCTGCTGTGATTTTTGTTTGAGGGTCTTTCCGTTTAAGTGCCGTGTCT
TGGTGAAGAACAACCACGCATGCAGAAGTACAACACCCCCATTTTTCCCG
GCCCTCCCTAGTCTCTTTTCTTTTTAAAAGCAGGATCCCCCCACAAAAAA
GGATAAATGCTTACCCTGCCTTTTCCGAAATGCCTCTCCACCACTGAACA
TTCCGTCTGAAATGCAGGGCTATGCTGGGCAGCAAGGACACGGACAGGGG
CAAGGGAAGGGAGGGAAGGAGCATGGCACCCTCCCCAGGGGTCTGTCCCA
GGATGGAAACCTTCGGTCTGGGGGGGGCAGGACTCCAGGACCCCTGAGAA
ACCGCCTGGGGCGGGGGGAGCAGTGGGAGGGGCTGAAGGAGGGGGGTGAA
GGGCTCCAGCACCAAGGGGTTGGGCCACAGGGCCGCATGACAGTGGCCCA
GGAGCAGGAGCCCCATCAGGGAGAGGCCTACGGGTATGGGGGGTTCGAGG
GTGCCCCATTCACACCCCAGAGCGGCCCCCTGGGGCCTGGGGACAGGGGC
ATGGACTCTGGGCTGCTGGATACGTCACCCTCGCAGCCACTGGCTTCTCC
TCCTCTAGCATCGCAGGCAGGTGTTCCCAGCTCTAAGGACGGTGGCGGAG
GAGGGTCAGTAGGCCAGTACAGCTCCTCAGCAGACTGGGTGATGATGAGG
TACGGGCTCACGCTTTCCACCCCGGTGTCCGGGCAGATGCATGAGGAGGG
TCCGAGGCCAGACCGGGGACCCCCAGGCCAGGGGCTGGGGCCAGGGCTGG
GGCAAGGGCAGGGGCAGGGAGAGGGCTCTTCCAACATGGTGTCGATGCTG
GAAGGGCTCAGCCTTGAGAACGAGCTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9280:862..2238-

>mRNA_D-mesarthrocarpus_Contig9280.1.1 ID=mRNA_D-mesarthrocarpus_Contig9280.1.1|Name=mRNA_D-mesarthrocarpus_Contig9280.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=420bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9280:862..2238- (Discosporangium mesarthrocarpum MT17_79)
ATGACAGTGGCCCAGGAGCAGGAGCCCCATCAGGGAGAGGCCTACGGGTA
TGGGGGGTTCGAGGGTGCCCCATTCACACCCCAGAGCGGCCCCCTGGGGC
CTGGGGACAGGGGCATGGACTCTGGGCTGCTGGATACGTCACCCTCGCAG
CCACTGGCTTCTCCTCCTCTAGCATCGCAGGCAGGTGTTCCCAGCTCTAA
GGACGGTGGCGGAGGAGGGTCAGTAGGCCAGTACAGCTCCTCAGCAGACT
GGGTGATGATGAGGTACGGGCTCACGCTTTCCACCCCGGTGTCCGGGCAG
ATGCATGAGGAGGGTCCGAGGCCAGACCGGGGACCCCCAGGCCAGGGGGC
TGGGGCAAGGGCAGGGGCAGGGAGAGGGCTCTTCCAACATGGTGTCGATG
CTGGAAGGGCTCAGCCTTGA
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