mRNA_D-mesarthrocarpus_Contig9271.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9271.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9271.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9271.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9271contigD-mesarthrocarpus_Contig9271:4181..4300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps11346
Model size120
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000414
EggNOG OGs2CWY9@1|root,2RVMS@2759|Eukaryota,2XEBK@2836|Bacillariophyta
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791081.040228-CDS-D-mesarthrocarpus_Contig9271:4180..43001680791081.040228-CDS-D-mesarthrocarpus_Contig9271:4180..4300Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9271 4181..4300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9271.2.1prot_D-mesarthrocarpus_Contig9271.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9271 4181..4300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9271.2.1

>prot_D-mesarthrocarpus_Contig9271.2.1 ID=prot_D-mesarthrocarpus_Contig9271.2.1|Name=mRNA_D-mesarthrocarpus_Contig9271.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=40bp
MKVRDGLVSHVLPLLLRRDGVMVQAYTRRRLETMYDLQVS
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mRNA from alignment at D-mesarthrocarpus_Contig9271:4181..4300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9271.2.1 ID=mRNA_D-mesarthrocarpus_Contig9271.2.1|Name=mRNA_D-mesarthrocarpus_Contig9271.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=120bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9271:4181..4300- (Discosporangium mesarthrocarpum MT17_79)
ATGAAGGTGCGGGATGGCCTTGTGAGCCATGTTTTGCCACTTCTCCTTCG
TCGCGATGGGGTCATGGTGCAGGCGTACACCAGAAGACGACTAGAGACCA
TGTACGACCTCCAGGTGAGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9271:4181..4300-

>mRNA_D-mesarthrocarpus_Contig9271.2.1 ID=mRNA_D-mesarthrocarpus_Contig9271.2.1|Name=mRNA_D-mesarthrocarpus_Contig9271.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=120bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9271:4181..4300- (Discosporangium mesarthrocarpum MT17_79)
ATGAAGGTGCGGGATGGCCTTGTGAGCCATGTTTTGCCACTTCTCCTTCG
TCGCGATGGGGTCATGGTGCAGGCGTACACCAGAAGACGACTAGAGACCA
TGTACGACCTCCAGGTGAGC
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