mRNA_D-mesarthrocarpus_Contig9270.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9270.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9270.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9270.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9270contigD-mesarthrocarpus_Contig9270:2072..2577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size243
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size129
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791080.9409428-UTR-D-mesarthrocarpus_Contig9270:2071..21851680791080.9409428-UTR-D-mesarthrocarpus_Contig9270:2071..2185Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9270 2072..2185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791080.9574673-CDS-D-mesarthrocarpus_Contig9270:2185..22851680791080.9574673-CDS-D-mesarthrocarpus_Contig9270:2185..2285Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9270 2186..2285 +
1680791080.9719343-CDS-D-mesarthrocarpus_Contig9270:2548..25771680791080.9719343-CDS-D-mesarthrocarpus_Contig9270:2548..2577Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9270 2549..2577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9270.2.1prot_D-mesarthrocarpus_Contig9270.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9270 2186..2577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9270.2.1

>prot_D-mesarthrocarpus_Contig9270.2.1 ID=prot_D-mesarthrocarpus_Contig9270.2.1|Name=mRNA_D-mesarthrocarpus_Contig9270.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=43bp
MGTALSPFVKWSSFRLGCGVGFRASLGTAKGGVICSRHCTSPV
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mRNA from alignment at D-mesarthrocarpus_Contig9270:2072..2577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9270.2.1 ID=mRNA_D-mesarthrocarpus_Contig9270.2.1|Name=mRNA_D-mesarthrocarpus_Contig9270.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=506bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9270:2072..2577+ (Discosporangium mesarthrocarpum MT17_79)
GCTGCCCTTGCATACCTTTGTTTCAGCAACTTCACACAAATGTCGTTACT
CCTGTTCCCTCCACAGTTTTCTAAAAAAGTTGGCATGTTTTCTTCGTTGG
GGTTCAAGTAACCTATGGGGACTGCTTTGTCGCCCTTTGTCAAATGGTCT
TCCTTTAGGTTGGGGTGTGGAGTTGGGTTTAGGGCCAGTTTAGGTACTGC
AAAAGGGGGTGTAAGTACAAAAACAAAACTAACAGGGGCTAAAATGAATT
GACAGGCGCTAAGATTAACTGAAAAGGGCTAAAAATAACTGATGGGGGTT
AGAAGTAACCGGCAGTAACGGCAGTTCCACCTCGTAGGTCGTGTTGGCGA
ATAGAGTCCTACAGGTTGGTACCAGACATCAGCATAGCTCTAGAGCTACA
ATATGATGCTCTAGAGCTACAACGTAATGCTCTGGACCCATCATGTAATG
CGTTCTGGGCGCTTGGTACCTCGTAAGTATGTTCAAGGCATTGTACATCT
CCAGTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9270:2072..2577+

>mRNA_D-mesarthrocarpus_Contig9270.2.1 ID=mRNA_D-mesarthrocarpus_Contig9270.2.1|Name=mRNA_D-mesarthrocarpus_Contig9270.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=129bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9270:2072..2577+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGGACTGCTTTGTCGCCCTTTGTCAAATGGTCTTCCTTTAGGTTGGG
GTGTGGAGTTGGGTTTAGGGCCAGTTTAGGTACTGCAAAAGGGGGTGTAA
TATGTTCAAGGCATTGTACATCTCCAGTC
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