mRNA_D-mesarthrocarpus_Contig9249.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9249.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9249.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9249.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9249contigD-mesarthrocarpus_Contig9249:2806..4735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791078.542827-UTR-D-mesarthrocarpus_Contig9249:2805..28291680791078.542827-UTR-D-mesarthrocarpus_Contig9249:2805..2829Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9249 2806..2829 -
1680791078.576651-UTR-D-mesarthrocarpus_Contig9249:4717..47351680791078.576651-UTR-D-mesarthrocarpus_Contig9249:4717..4735Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9249 4718..4735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791078.5550692-CDS-D-mesarthrocarpus_Contig9249:2829..28531680791078.5550692-CDS-D-mesarthrocarpus_Contig9249:2829..2853Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9249 2830..2853 -
1680791078.5659091-CDS-D-mesarthrocarpus_Contig9249:4438..47171680791078.5659091-CDS-D-mesarthrocarpus_Contig9249:4438..4717Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9249 4439..4717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9249.3.1prot_D-mesarthrocarpus_Contig9249.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9249 2830..4717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9249.3.1

>prot_D-mesarthrocarpus_Contig9249.3.1 ID=prot_D-mesarthrocarpus_Contig9249.3.1|Name=mRNA_D-mesarthrocarpus_Contig9249.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=101bp
MDSTATIITDSESDRSTACTGADQKKRGAEYMSQQSDTDHLCILFAHGRN
WKQQWVSEHGYYAQPGQVRAGQGRARGMDCAVLAPTCSVINARTHPPVAG
*
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mRNA from alignment at D-mesarthrocarpus_Contig9249:2806..4735-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9249.3.1 ID=mRNA_D-mesarthrocarpus_Contig9249.3.1|Name=mRNA_D-mesarthrocarpus_Contig9249.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1930bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9249:2806..4735- (Discosporangium mesarthrocarpum MT17_79)
GCCAGGAACAGCGTCATAATGGACAGCACCGCCACCATCATCACAGACTC
GGAGAGTGACAGGAGCACCGCCTGCACAGGCGCCGACCAGAAGAAGAGAG
GGGCGGAATACATGAGTCAACAATCGGACACAGACCATCTTTGCATCTTG
TTTGCTCATGGACGCAACTGGAAGCAGCAGTGGGTCAGTGAACACGGGTA
TTACGCCCAGCCAGGGCAGGTCAGGGCAGGTCAGGGCAGGGCACGAGGAA
TGGACTGCGCCGTGCTCGCTCCAACCTGTTCAGTCATCAATGCCAGGGCC
TAAGGCCATGCTGTAATCAGGGGGACCAAGAGACCTGGGTTCAAGCGGCT
CAGAGGGGGGGGGGTGGGAAACTGCCTCAAGGCTGGCAAAGACAGAGAAC
ATATAATGTGAGGGAGAGTAGGACAGTTACAGCTATGGTGTACAATGATT
ATGGCGAGGGTACCCCTGTGCTGTTTGGAAACAGACGGGGCCTTGTCCCC
CCACCTGTGTGGGCCCTGTGAAATCATCCCCAGACACTTCACAGGACATG
TCTGCTGCCTTGCCCGTCATGCCTCCAACACAATCCCCGCAGGAGTCTCG
AAACGCTTCTCCATGGCACCACCCCCCTGCCGTTTCCGGGGTTGGGTTTT
TCACTTAATGCCTTAGTAATCATGCCATTGGCACGAGACTGGGTTAGGGT
TAGGGTCAGGGTTAGGCGTGGGGCACGATGAGGGTAAAAACCTGAGGTCC
GTGCACAGCCACAGCGACCACAGTTACACTGCAGGCCCACCCCACAAGAA
ACGTGTGGAGCTCAAGTTGGAGGGGGGGGGGGGGGGTAATGGGGAAACTG
AGAGTGGGGAATGGTTCAAGCTCTTGGCTGCTGACACTCCTGCTGGATAA
TCAGAGAACATGGGGGAGGACAACAGGACATCAAGCATGGCTTGTCCTTT
CCTGCAGCACTCAGGTACAGCGCTGGCTGTGACCTTTTTTTTTCCTTTTG
TGACTTTTTTTGAGCATGAGCTGCGACCTGCAACAGACCTCTTCTCTCAG
GTTCTTATGAGGCATAATCCACCGGAAGCAACACCATCAAGCCATCCCAC
TGATAGCTGTCAGGGTGAGGCCCCTCTAATCAAGAGGGTCACAACAACAC
AAGAAGGGGACTGGGAATTGGGGGCTGGGACTAGAGTGTCTGGTAGCAGG
GGAGAAGGCTCTCTGTAAAAAGCTCAGGACAAGGACTCACCGCAGTCCCT
TGTGGAGTTATTCCCTCCACACACAAGACAGGAGTCACAGGTGCTGTCAG
ACTGGCTGGCCAGTGGGCTGCAGCCACAATCTGACACCGGCACTCCACTG
CGGTAGTACCTGTGATGCAGGTTTGGGTGTGTGCGTGGGGGGGGGGGGAG
GGAGGGGGGAAGGAGAGAATGCAGACTTTGGTTAGGGTTATGGTTATGGT
TAAAGAACAGCTTTTACTGCACTCACAATAGTCTGGCTGCTGAAAGAAGG
GTCCTGGGGTCATATTGAACCTGTCAAAGTATGGTCTCATTTCTCTGGAT
CAATCTGTGTGTACTGTCCTTTAGAAGCATGTAGTACTAAGATTAGAGCT
GAATAGGTGCCACAATAGGTTAGGTAACTCTAACCCAAACCCTAACCCTC
TCCAGCGAAAGGGTGACACAAACCAAAAAAAGGACCAAAAAAAGGCCAAA
GCAAAAGAGTGTTTTGTTGGTCATGCCTATGCTGCAGCACAACTTTAAAA
CAACGATGACAGACTCCCACTGTGTTAACTCACACACACACATGGACACA
CACCTGAAAGACATAACATGACTATTCACACGCCCAGTGCTCCCGCTGAC
AGATAGGCCCCGCACTGACTCATCCATCCAAGACCCACCCACCAGTCGCA
GGCTAGATGTCACCCCCCCCTGCCCCCCCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9249:2806..4735-

>mRNA_D-mesarthrocarpus_Contig9249.3.1 ID=mRNA_D-mesarthrocarpus_Contig9249.3.1|Name=mRNA_D-mesarthrocarpus_Contig9249.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=303bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9249:2806..4735- (Discosporangium mesarthrocarpum MT17_79)
ATGGACAGCACCGCCACCATCATCACAGACTCGGAGAGTGACAGGAGCAC
CGCCTGCACAGGCGCCGACCAGAAGAAGAGAGGGGCGGAATACATGAGTC
AACAATCGGACACAGACCATCTTTGCATCTTGTTTGCTCATGGACGCAAC
TGGAAGCAGCAGTGGGTCAGTGAACACGGGTATTACGCCCAGCCAGGGCA
GGTCAGGGCAGGTCAGGGCAGGGCACGAGGAATGGACTGCGCCGTGCTCG
CTCCAACCTGTTCAGTCATCAATGCCAGGACCCACCCACCAGTCGCAGGC
TAG
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