mRNA_D-mesarthrocarpus_Contig9243.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9243.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9243.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: W4H282_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H282_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.500e-14
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 GTLMLKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGGGLEAIQA--KAGYSIILETQPGNSPDLSVNDLGFF 258
            GTL L+P  V    YK ++ID VIPAIKA+ P     +  +QQD A PH     ++ +QA    G+S+ L+ QP NSPDL++ DLGFF
Sbjct:  192 GTLELRPINVTRTIYKRILIDNVIPAIKAKWPAEATRSVIIQQDNARPHVSPWDIDIVQACTSTGWSMQLKCQPPNSPDLNLLDLGFF 279          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: A0A6A4Z322_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z322_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.170e-12
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 GTLMLKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGGGLEAIQA--KAGYSIILETQPGNSPDLSVNDLGFF 258
            GTL L+P  V    YK+++ID VIPAIKA+ P     +  +QQD A PH        + A    G+S+ L+ QP NSPDL+V DLGFF
Sbjct:  265 GTLELRPINVTRPIYKKMLIDNVIPAIKAKWPAESSRSVVIQQDNARPHVAPWDAAVVSACTSDGWSMSLKCQPPNSPDLNVLDLGFF 352          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.680e-12
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 GTLMLKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTN-FVQQDGATPH--TGGGGLEAIQAKAGYSIILETQPGNSPDLSVNDLGFFH 261
            GTL+ KP  V  E YK ++++KV+PAI  + PR       F+Q+D A PH  T    ++A  A  G++I ++TQP NSPD++V DLGFF+
Sbjct:  348 GTLVTKPQNVDGEVYKRMLLEKVLPAIYEKWPRGSSTPEIFIQEDNAKPHKATIREEVKAAAASKGWNITVKTQPPNSPDMNVLDLGFFN 437          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: W4FGU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGU6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.210e-11
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 GTLMLKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGGGLEAIQA--KAGYSIILETQPGNSPDLSVNDLGFF 258
            GT+ L+P  V    +K+++ID VIPAIKA  P     T F+QQD A PH      + ++A    G+++ L+ QP NSPD+++ DLGFF
Sbjct:  192 GTMELRPVNVTRPVHKKMLIDNVIPAIKALWPADCSKTVFIQQDNARPHVPPSDADIVKACTSDGWAMKLKYQPPNSPDMNILDLGFF 279          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: W4FWJ6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWJ6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.430e-11
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 GTLMLKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGGGLEAIQA--KAGYSIILETQPGNSPDLSVNDLGFF 258
            GT+ L+P  V    YK+++ID VIPAIKA  P     T F+QQD A  H      + I+A    G+++ L+ QP NSPD++V DLGFF
Sbjct:   87 GTMELRPVNVTRPVYKKMLIDNVIPAIKALWPADCSKTVFIQQDNARLHVPPSDADIIKACTSDGWAMKLKYQPPNSPDMNVLDLGFF 174          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.770e-11
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   25 TVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGGGLEAIQAKA---GYSIILETQPGNSPDLSVNDLGFF 258
            T+  E YK+  ID ++PAIK +MP        VQQDGA+PHTG G  E + +     G+ + L TQP  SPDL++NDLG F
Sbjct:  265 TIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCF 345          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: W4G786_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G786_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.110e-11
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   13 LKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGGGLEAIQA-KA-GYSIILETQPGNSPDLSVNDLGFF 258
            +K  +V  E YK +++DKVIPAI+A+ PR       +QQD A PH     ++ + A KA G+ + +  QP NSPDL+V DLGFF
Sbjct:    1 MKTVSVTRETYKAMLVDKVIPAIRAKWPRGETKAVKIQQDNARPHVPPSDVDVVAACKADGWDMEVVFQPPNSPDLNVLDLGFF 84          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: W4GP40_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP40_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.930e-11
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 GTLMLKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHT--GGGGLEAIQAKAGYSIILETQPGNSPDLSVNDLGFF 258
            GT++  P TV  + Y++++ID VIPAIKA+ P        +QQD A PH       + A  A  G++I +  QP NSPD++V DLGFF
Sbjct:  171 GTMVTVPCTVTRDTYRDMLIDNVIPAIKAKWPNDKAARILLQQDNARPHVPLSDERVAAACASDGWAIEVVCQPPNSPDMNVLDLGFF 258          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: UPI0007EEFD65 (uncharacterized protein LOC108203252 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EEFD65)

HSP 1 Score: 67.8 bits (164), Expect = 8.210e-11
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 GTLMLKPA-TVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGGGLEAIQAKA--GYSIILETQPGNSPDLSVNDLGFF 258
            G + LKP   +     K+ +++K++PAIKA+ P+       +QQD   PH  G  +E ++     G++I L  QP NSPDL+++DLGFF
Sbjct:  112 GVMELKPIENITKVVVKQCLVEKILPAIKAKWPQDNKKHIVIQQDNVRPHISGDDIEFVEVAESDGFNITLANQPANSPDLNISDLGFF 200          
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Match: A0A3R7YI76_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7YI76_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-10
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   13 LKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGGGLEAIQA--KAGYSIILETQPGNSPDLSVNDLGFF 258
            L+P  V    +K+++ID VIPAIKA  P     T F+QQD A PH      + ++A    G+++ L+ QP NSPD+++ DLGFF
Sbjct:    3 LRPVNVTRPVHKKMLIDNVIPAIKALWPADCSKTVFIQQDNARPHVPPSDADIVKACTSDGWAMKLKYQPPNSPDMNILDLGFF 86          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9243.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4H282_9STRA8.500e-1446.59Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4Z322_9STRA1.170e-1246.59Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A448ZNT1_9STRA7.680e-1244.44Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
W4FGU6_9STRA1.210e-1143.18Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4FWJ6_9STRA1.430e-1145.45Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6H5JIM0_9PHAE2.770e-1146.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4G786_9STRA4.110e-1145.24Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GP40_9STRA4.930e-1143.18Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI0007EEFD658.210e-1138.20uncharacterized protein LOC108203252 n=1 Tax=Daucu... [more]
A0A3R7YI76_9STRA1.000e-1042.86Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9243contigD-mesarthrocarpus_Contig9243:4430..4946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008881338.1
Model size517
Max annot lvl157072.XP_008881338.1|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.27e-11
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791078.4005625-UTR-D-mesarthrocarpus_Contig9243:4429..46461680791078.4005625-UTR-D-mesarthrocarpus_Contig9243:4429..4646Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9243 4430..4646 -
1680791078.42799-UTR-D-mesarthrocarpus_Contig9243:4937..49461680791078.42799-UTR-D-mesarthrocarpus_Contig9243:4937..4946Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9243 4938..4946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791078.4132824-CDS-D-mesarthrocarpus_Contig9243:4646..49371680791078.4132824-CDS-D-mesarthrocarpus_Contig9243:4646..4937Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9243 4647..4937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9243.1.1prot_D-mesarthrocarpus_Contig9243.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9243 4647..4937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9243.1.1

>prot_D-mesarthrocarpus_Contig9243.1.1 ID=prot_D-mesarthrocarpus_Contig9243.1.1|Name=mRNA_D-mesarthrocarpus_Contig9243.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=97bp
MLKPATVKVERYKEVMIDKVIPAIKARMPRPPGHTNFVQQDGATPHTGGG
GLEAIQAKAGYSIILETQPGNSPDLSVNDLGFFHPAAEGGCGSVFS*
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mRNA from alignment at D-mesarthrocarpus_Contig9243:4430..4946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9243.1.1 ID=mRNA_D-mesarthrocarpus_Contig9243.1.1|Name=mRNA_D-mesarthrocarpus_Contig9243.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=517bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9243:4430..4946- (Discosporangium mesarthrocarpum MT17_79)
GGAACTCTGATGCTGAAACCAGCCACAGTTAAGGTGGAGAGGTACAAGGA AGTCATGATCGATAAGGTCATCCCCGCAATCAAGGCGAGAATGCCTAGAC CACCAGGTCACACGAACTTCGTGCAGCAGGATGGTGCAACGCCGCACACG GGGGGGGGGGGCTTGGAGGCAATTCAGGCAAAGGCGGGGTACAGCATCAT CCTGGAAACCCAGCCTGGCAACTCACCTGACCTCAGCGTGAACGATCTTG GATTCTTCCATCCAGCAGCTGAAGGAGGATGTGGGAGTGTCTTCTCCTGA GGATCTGTTGGAGGCCACAATGGAGGCCTTCGATGTCTACCCCCGGGAGA CACTAGAACGAGTCTGGCAGAGCCTGTTCGCAGTCCTCGGGGAAGTTCTT GGCTCTAAGGGTGATAATAGCTACAAGTTGCCCCATTTGGGCTATAATCT CGGTAGGGCAGGCAAACTTCCGGTCAACGGGCGGGTGGATGAGGAAAAAT ACCGTGTCGGAAAGGCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9243:4430..4946-

>mRNA_D-mesarthrocarpus_Contig9243.1.1 ID=mRNA_D-mesarthrocarpus_Contig9243.1.1|Name=mRNA_D-mesarthrocarpus_Contig9243.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=291bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9243:4430..4946- (Discosporangium mesarthrocarpum MT17_79)
ATGCTGAAACCAGCCACAGTTAAGGTGGAGAGGTACAAGGAAGTCATGAT
CGATAAGGTCATCCCCGCAATCAAGGCGAGAATGCCTAGACCACCAGGTC
ACACGAACTTCGTGCAGCAGGATGGTGCAACGCCGCACACGGGGGGGGGG
GGCTTGGAGGCAATTCAGGCAAAGGCGGGGTACAGCATCATCCTGGAAAC
CCAGCCTGGCAACTCACCTGACCTCAGCGTGAACGATCTTGGATTCTTCC
ATCCAGCAGCTGAAGGAGGATGTGGGAGTGTCTTCTCCTGA
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