mRNA_D-mesarthrocarpus_Contig9235.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9235.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9235.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9235.1.1 vs. uniprot
Match: A0A6H5J734_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J734_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.370e-44
Identity = 119/262 (45.42%), Postives = 148/262 (56.49%), Query Frame = 1 
Query:    1 QVLSPPGGFPALNGRIHEVSALLNPPTLDVFSLLLSREDTRDWAEWVEKAGLSPMLSDPSAGPFTVFAPVSTSLADIPARETILAKAATDPSTLAPLILFHVARGAGPWG--SRIFTPSLANASECHRNILAGERFVSGIELQTLLADWDGS-YEGMGTERAGRQEWPRAGGGGGAEGWPWASTGEKVGGASRAG----FQVFLGPASSCDTGGGRDGGRAGLRLMLGAFSTRVVVPDLNAVNGVVHGISGVLTYPGYKRPR 765
            +VL P  G  ALNGRIH++S  L  P  DVFSLL S      WA+W+E  GL+ +LSD +AGPFTVFAPV ++L  +    TI    A+   +L  L+ FHVA G       SR+FTPSLANA+   R+ L+G+RFVSG +L TLL   DG  +EG       R    +    G       A+T    G  + AG     +VF+GP                  L LGAF+  VV+PDLNAVNGVVHGISGV+TYPGY RPR
Sbjct: 1260 EVLRPEVGMAALNGRIHQISEPLRVPAPDVFSLLSSHPQLTGWADWIELTGLAELLSDRTAGPFTVFAPVDSALEQVAGLMTI----ASHTESLTKLVRFHVALGTATTAAASRLFTPSLANATAEERSTLSGDRFVSGPQLWTLLDHEDGGDHEGSSDRAQARMLSVQIAAAG-------AATDNDGGSGASAGSSDCVRVFVGPDGXXXX--XXXXXXXXXDLFLGAFTAEVVLPDLNAVNGVVHGISGVMTYPGYVRPR 1508
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BLAST of mRNA_D-mesarthrocarpus_Contig9235.1.1 vs. uniprot
Match: D7FXZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ5_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 3.010e-43
Identity = 118/257 (45.91%), Postives = 146/257 (56.81%), Query Frame = 1 
Query:    1 QVLSPPGGFPALNGRIHEVSALLNPPTLDVFSLLLSREDTRDWAEWVEKAGLSPMLSDPSAGPFTVFAPVSTSLADIPARETILAKAATDPSTLAPLILFHVARGAGPW--GSRIFTPSLANASECHRNILAGERFVSGIELQTLLA-DWDGSYEGMGTERAGRQEWPRAGGGGGAEGWPWASTGEKVGGASRAGFQVFLGPASSCDTGGGRDGGRAGLRLMLGAFSTRVVVPDLNAVNGVVHGISGVLTYPGYKRP 762
            +VL P  G  ALNGRIH++S  L  P  DVFSLL S      WA+WVE  GL+ +LSDP+AGPFTVFAPV ++L  +    TI    A+   +L  L+ FHVA G       SR+FTPSLANA+   R+ L+G+RFVSG  L TLL  + DG +EG  ++R   +                               +VF+GP      G    GG  G  L LGAF+  VV+PDLNAVNGVVHGISGV+TYPGY RP
Sbjct:  919 EVLRPDVGMAALNGRIHQISEPLRVPAPDVFSLLSSHPQLTGWADWVELTGLAELLSDPTAGPFTVFAPVDSALEQVAGLMTI----ASHTESLTKLVRFHVALGTATTTTASRLFTPSLANATAEERSALSGDRFVSGPRLWTLLDHEDDGDHEGS-SDRERARMLSXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVFVGPDG---VGQQHKGGGGG--LFLGAFTAEVVLPDLNAVNGVVHGISGVMTYPGYVRP 1165
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BLAST of mRNA_D-mesarthrocarpus_Contig9235.1.1 vs. uniprot
Match: A0A835Z7H6_9STRA (FAS1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.650e-12
Identity = 78/250 (31.20%), Postives = 102/250 (40.80%), Query Frame = 1 
Query:   31 ALNGRIHEVSALLNPPTLDVFSLLLSREDTRD-WAEWVE-KAGLSPMLSDPSAGPFTVFAPVSTSLADIPARETILAKAATDPSTLAPLILFHVARGAGPWGSRIFTPSLANASECHRNILAGERFVSGIELQTLLADWDGSYEGMGTERAGRQEWPRAGGGG----GAEGWPWASTGEKVGGASRAGFQVFLGPASSCDTGGGRDGGRAGLRLMLGAFSTRVVVPDLNAVNGVVHGISGVLTYPGYKRP 762
            A+NGR   +   L  P   +  LL + +     WAEWV     L+ ML+DP  G +T+FAP  +++  IP R      A      LA L+ FH++ G   W     +  L+NA+E  R  LAGER+ SG  LQT   D +     M T+          G GG    G  GWP                                             FS  V+  DL A NGV+H IS VLTY GY+ P
Sbjct:  563 AINGRAWVLDVPLVVPAPTIMDLLRASDSGASMWAEWVSLDEELAAMLADPEKGSYTIFAPADSAMLAIPERRR---PAIQHDRQLAQLLRFHLSPG---WH---MSHMLSNATEAERQQLAGERYCSGTTLQTQRTDCE-----MHTQ---------VGEGGLLFMGTPGWP---------------------------------------------FSADVITRDLVASNGVLHIISSVLTYDGYRLP 744
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9235.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J734_9PHAE2.370e-4445.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXZ5_ECTSI3.010e-4345.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7H6_9STRA3.650e-1231.20FAS1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9235contigD-mesarthrocarpus_Contig9235:1483..4430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1667
Hectar predicted targeting categoryother localisation
Exons4
Cds size618
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9235.1.1prot_D-mesarthrocarpus_Contig9235.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9235 2370..3386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791077.8107655-UTR-D-mesarthrocarpus_Contig9235:1482..23691680791077.8107655-UTR-D-mesarthrocarpus_Contig9235:1482..2369Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9235 1483..2369 -
1680791077.8599374-UTR-D-mesarthrocarpus_Contig9235:3386..34011680791077.8599374-UTR-D-mesarthrocarpus_Contig9235:3386..3401Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9235 3387..3401 -
1680791077.8704207-UTR-D-mesarthrocarpus_Contig9235:4283..44301680791077.8704207-UTR-D-mesarthrocarpus_Contig9235:4283..4430Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9235 4284..4430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791077.8217695-CDS-D-mesarthrocarpus_Contig9235:2369..25911680791077.8217695-CDS-D-mesarthrocarpus_Contig9235:2369..2591Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9235 2370..2591 -
1680791077.835081-CDS-D-mesarthrocarpus_Contig9235:2813..30651680791077.835081-CDS-D-mesarthrocarpus_Contig9235:2813..3065Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9235 2814..3065 -
1680791077.8469338-CDS-D-mesarthrocarpus_Contig9235:3242..33861680791077.8469338-CDS-D-mesarthrocarpus_Contig9235:3242..3386Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9235 3243..3386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9235.1.1

>prot_D-mesarthrocarpus_Contig9235.1.1 ID=prot_D-mesarthrocarpus_Contig9235.1.1|Name=mRNA_D-mesarthrocarpus_Contig9235.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=206bp
MLSDPSAGPFTVFAPVSTSLADIPARETILAKAATDPSTLAPLILFHVAR
GAGPWGSRIFTPSLANASECHRNILAGERFVSGIELQTLLADWDGSYEGM
GTERAGRQEWPRAGGGGGAEGWPWASTGEKVGGASRAGFQVFLGPASSCD
TGGGRDGGRAGLRLMLGAFSTRVVVPDLNAVNGVVHGISGVLTYPGYKRP
RIDEG*
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mRNA from alignment at D-mesarthrocarpus_Contig9235:1483..4430-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9235.1.1 ID=mRNA_D-mesarthrocarpus_Contig9235.1.1|Name=mRNA_D-mesarthrocarpus_Contig9235.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2948bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9235:1483..4430- (Discosporangium mesarthrocarpum MT17_79)
CAGGTCCTTTCCCCACCAGGCGGTTTCCCTGCCCTCAATGGGCGAATACA
TGAGGTCTCAGCGCTACTGAACCCACCCACCCTTGATGTATTCTCCCTGC
TGCTGTCAAGGGAAGACACAAGGGACTGGGCTGAGTGGGTCGAGAAGGTT
TGTTTTTTTGGGCAGGCAGCTCAGATAGAGGTCAGGGTTCTGGAAGGATC
GGGGTGGGATCTTTTGTGGAAATGTGTGTGTATGCTCCCACTTCTGCCCC
CTTACCCCAACTGCTACTACTACTACTACAGCAGTTGCAGTACAGACTAC
TTACGGTTATGATTAGTCCCCTCGCCCTGATATCCCTGTTGTTTTCCAGC
AGTGCATTTTGCGTGTGATTATGCAGCTGCTACCTTACTCCTTACGTTAT
TTTAAGAAGTCCGAGAGGCTTGAGCTTTATGTCTGCATCAGTCGAGCTTT
GTGGGGGGAGGGTGGGGTCGTGGGGGGGAGGCAGAGGGGGGAGCAAACTC
CCCTTCCTTCAACTTGATTGGGACAGGATGTCACAAGATGCAGTACCCGG
AATATCCTGTACACCTGGATGGTGTGCGTGCGCGCCCATGACTAGCCCCC
AAGACTGTGCTTTTCGTTCCCCTGACAAATGAAACTACGCTTGTAATATT
GCCTCCTAAATGCATTCCCTGTGCCTCCCCCCTCCTGCAATTTCCGTGCA
GTCCCCGCGCACCCTCTGTGAGTCCCAGACAGCACTGACGTTTCTCCACA
TGCCAGCCACTCTAATGTGCTGTGCTGTAGTTCTGAGAAACAAAGCACAG
TAGTGCACACATCTGTGCTTCATGCTTCATTGGCTCCAATGTAAATCATT
CCATGTGGGTTCTCTCTTCTTGCCCTGTACCCCTTCTCCGTATCCTTATT
TTTCCCACCCTTACCCGAACCAGCCCCCTCAACGCCATCCCTCTCCTTGT
GCCCTCGCTCAACACTAACCCTGACCCTGGCCCTGGCCCTGACCCCGGCC
GTGACCCTGGCCTTATCTCTCATTCACAGGCGGGCCTTTCTCCCATGTTG
TCAGACCCGTCTGCTGGGCCCTTCACCGTGTTCGCCCCCGTCTCCACCTC
CCTGGCTGACATCCCCGCCAGGGAAACCATCCTTGCCAAGGCTGCCACAG
ACCCGTCCACATTGGCACCCCTCATCCTGTTCCACGTGGTCGGGCCAACC
CTCCTGAACCCGGTCCTCTCCGCCCGAGGTGCCAGAAGCTGCGCCGGGGC
TGACGGGGTGACAGCAGAGGAGGAGAGGGGGGGGGGGGGGGGGGGGGATG
AGCTTGAAGAGGAGGAGTGCAGGGAGGGCTGGGACATTCTTAAGGGACGC
CTAGCCAAGGGTGAGGCAAGGGGAGCAGGTCCCTGGGGCAGCAGAATATT
CACACCGTCGCTCGCGAACGCCTCCGAATGTCATAGGAATATCCTGGCCG
GCGAGCGGTTCGTCTCTGGCATTGAGCTGCAGACACTCCTCGCCGACTGG
GATGGCTCTTACGAGGGGATGGGCACAGAGCGGGCAGGGAGACAGGAATG
GCCCAGGGCCGGGGGCGGAGGCGGGGCAGAGGGCTGGCCCTGGGCAAGCA
CTGGGGAGAAAGTAGGAGTATTCGATGGGTTGCGCAACTTTTTTGGCCGT
ACGCAGGGGGCAAGGTTGGGGGGGGTAGAGGAGCAGGGGGGGGCTGCAGC
AGGTGAGGTGGGCGTAACGACTCTAGTGACCCAGATCTCTGCGACTTCCT
CCCCTGTGACTGAGGATGGTGCTACCGACCCTGGGCTAAGGAACAGCCAA
CAGGTGGTAGGGACGTTCGGACGTGGGGAGGGGGACAAGGGTGCCAGCAG
GGCAGGTTTCCAGGTCTTTCTAGGGCCTGCGTCTTCTTGTGATACGGGAG
GGGGTAGGGATGGGGGGAGGGCAGGGCTCCGGCTCATGCTTGGGGCGTTT
TCAACAAGGGTGGTTGTTCCTGACCTAAATGCAGTGAATGGGGTCGTGCA
TGGGATTTCAGGGGTGCTGACGTACCCAGGATATAAACGACCACGGATAG
ATGAAGGATGAGAGTAGTCGCTGGCCATGTGCGTGGCTGCTTCTCATTCC
CCTGCGCCACCTCGATCTTTCATGCGTGGCCGGTGTGTGTATTCCATTCT
GTTTTGTTTTTCGTTTTGCATGTTGTTTAGAGCCCTCTAGACCTACTCTT
GTAAAGGACAGTTCTACAGTAGAGCTCTATGCACGCATTGTGTGCATATG
GTGTGTTTCGATGTTTTGGGATGGTTGTGAGTGCTGGGAAGAGCCTCGAC
CGGGTCCATTGAATTGGGGGAAAAGGCAATAGTAAGCAACCGTGGCATAG
AGTGCAGCAGGACTAGCGAATTGTTTTGTTCGAGACAGCAAAGAGCGGAT
CCGCATTTATCACTCCTCCGTGCCAGCTGTGTAGATGGAGATAGAGAGAA
AATTGGGGGGCATTTTCTGATTGGTCCAAAATTTGGAAGGAGAGACCTGA
TGGCGGAAGGAGTAGCTATGTGCACGTCCTTTGCCTTTTTAGCAGGGTCA
TTCCTGACTGGGCAAACACGTCCAGTACTGCCTGCTGCTATAGCGCACTA
CCTTTCTAGTGTTAGTTTGAACTCGGATTAAACTTCCTCTAGATTACAGC
AATGCAGAGAGAGCCAATCTTGAATCCCTTTTTCCAGGGAGACCACTCCA
CTTTGAAACTCGACGAAAGAGGATTGTGTGACATTTCTTGCTTCGGGTGA
TTGTGGCACCCTCACGAAGATTCCACTCAACAGCTGTTCTACGTATTGTG
TACCTGGTACTGTCTTGATCTGCCTGTCCATACGTGGTTTTTGTTTTTTG
GTGTCTGGATGGATGAGTACGAAGTTTGTAAATGAGCAAATCAGTTTGTT
CGATGGAGCCGTTCTGGACATAAACAAGTCAAATTCGCCGTTTCTTCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9235:1483..4430-

>mRNA_D-mesarthrocarpus_Contig9235.1.1 ID=mRNA_D-mesarthrocarpus_Contig9235.1.1|Name=mRNA_D-mesarthrocarpus_Contig9235.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=618bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9235:1483..4430- (Discosporangium mesarthrocarpum MT17_79)
ATGTTGTCAGACCCGTCTGCTGGGCCCTTCACCGTGTTCGCCCCCGTCTC
CACCTCCCTGGCTGACATCCCCGCCAGGGAAACCATCCTTGCCAAGGCTG
CCACAGACCCGTCCACATTGGCACCCCTCATCCTGTTCCACGTGGCAAGG
GGAGCAGGTCCCTGGGGCAGCAGAATATTCACACCGTCGCTCGCGAACGC
CTCCGAATGTCATAGGAATATCCTGGCCGGCGAGCGGTTCGTCTCTGGCA
TTGAGCTGCAGACACTCCTCGCCGACTGGGATGGCTCTTACGAGGGGATG
GGCACAGAGCGGGCAGGGAGACAGGAATGGCCCAGGGCCGGGGGCGGAGG
CGGGGCAGAGGGCTGGCCCTGGGCAAGCACTGGGGAGAAAGTAGGAGGTG
CCAGCAGGGCAGGTTTCCAGGTCTTTCTAGGGCCTGCGTCTTCTTGTGAT
ACGGGAGGGGGTAGGGATGGGGGGAGGGCAGGGCTCCGGCTCATGCTTGG
GGCGTTTTCAACAAGGGTGGTTGTTCCTGACCTAAATGCAGTGAATGGGG
TCGTGCATGGGATTTCAGGGGTGCTGACGTACCCAGGATATAAACGACCA
CGGATAGATGAAGGATGA
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