mRNA_D-mesarthrocarpus_Contig9225.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9225.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9225.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9225.2.1 vs. uniprot
Match: A0A6H5KPH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.750e-34
Identity = 72/135 (53.33%), Postives = 90/135 (66.67%), Query Frame = 1 
Query:    4 GSRWKLFLFSPTLSCQRISELLNLSVKRYCSPKYMRVFAPTNGKIDGWASALGVKDHSPASFELAVTANLREVLYTMKARVLVMLDEGRGGVGEGGGKXXXXXXXXMWDGGVGAGMTSVALQRAVAQASASCNEW 408
            G RWKLF+FSPT+ C RI+ELLN SVKR+CS KYMRVFAPT   +DGW++A  VK   PA++ELAVTANLREVLY +KAR ++M+   RG      G               G+ M+S AL+R V  A+A+ NEW
Sbjct:  548 GPRWKLFMFSPTIGCTRIAELLNFSVKRFCSFKYMRVFAPTGEAVDGWSAAQKVKKSHPAAYELAVTANLREVLYAIKARAVLMVSSARGA-----GLSPAQVAAEAAAARDGSSMSSAALERVVTTATATYNEW 677
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BLAST of mRNA_D-mesarthrocarpus_Contig9225.2.1 vs. uniprot
Match: D8LPR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR1_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.650e-31
Identity = 67/128 (52.34%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:   25 LFSPTLSCQRISELLNLSVKRYCSPKYMRVFAPTNGKIDGWASALGVKDHSPASFELAVTANLREVLYTMKARVLVMLDEGRGGVGEGGGKXXXXXXXXMWDGGVGAGMTSVALQRAVAQASASCNEW 408
            +FSPT+ C RI+ELLN SVKR+CS KYMRVFAPT   +DGW++A  VK   PA++ELAVTANLREVLY +KAR ++M+   RG     G              G G+ M+S AL+R V  A+A+ NEW
Sbjct:    1 MFSPTIGCTRIAELLNFSVKRFCSFKYMRVFAPTGEAVDGWSAAQKVKKSHPAAYELAVTANLREVLYAIKARAVLMVSSARGA----GLSPAQVAAEAAAAAGDGSNMSSAALERVVTTATATYNEW 124
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9225.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPH5_9PHAE1.750e-3453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPR1_ECTSI8.650e-3152.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9225contigD-mesarthrocarpus_Contig9225:2902..4931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LPR1
Model size411
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.42e-31
EggNOG OGs2CMCB@1|root,2QPYF@2759|Eukaryota
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791076.7617023-CDS-D-mesarthrocarpus_Contig9225:2901..29641680791076.7617023-CDS-D-mesarthrocarpus_Contig9225:2901..2964Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9225 2902..2964 +
1680791076.7742636-CDS-D-mesarthrocarpus_Contig9225:4098..41701680791076.7742636-CDS-D-mesarthrocarpus_Contig9225:4098..4170Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9225 4099..4170 +
1680791076.7875044-CDS-D-mesarthrocarpus_Contig9225:4655..49311680791076.7875044-CDS-D-mesarthrocarpus_Contig9225:4655..4931Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9225 4656..4931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9225.2.1prot_D-mesarthrocarpus_Contig9225.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9225 2902..4931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9225.2.1

>prot_D-mesarthrocarpus_Contig9225.2.1 ID=prot_D-mesarthrocarpus_Contig9225.2.1|Name=mRNA_D-mesarthrocarpus_Contig9225.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=137bp
LGSRWKLFLFSPTLSCQRISELLNLSVKRYCSPKYMRVFAPTNGKIDGWA
SALGVKDHSPASFELAVTANLREVLYTMKARVLVMLDEGRGGVGEGGGKG
GYGGRGGMWDGGVGAGMTSVALQRAVAQASASCNEW*
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mRNA from alignment at D-mesarthrocarpus_Contig9225:2902..4931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9225.2.1 ID=mRNA_D-mesarthrocarpus_Contig9225.2.1|Name=mRNA_D-mesarthrocarpus_Contig9225.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2030bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9225:2902..4931+ (Discosporangium mesarthrocarpum MT17_79)
CTGGGGTCGCGGTGGAAGCTGTTCCTCTTCTCCCCCACGCTGAGCTGCCA
GAGGATATCAGAGGTGAGCGGAGGCGTTTCTCTTGTCCCTCGTCTCTTCC
GTTTGTCCCCTGCTTTGCAGCCAGTGATGAGGGGGGGGAGGGAGGGAGGG
GGAGGGAAGGGCATTTGAATCTGAATTATGTATGTAACACCAATCACGCA
CCACAGTTTCTTTTTTCTTTTTTTTAGCATTGTAGGTAATTCAATAGACG
TGGGAATTTTGTTGCAGTAGAGCTAAGCTACTTGTTGATCAGCTGATAAT
GTGAGTTGATACAATGTGAGTGTATTTATGACAGGGCTTACACAGCATCA
GCTACTTGCACCTTGCAGCTGATTGACTCCTTGCAAAGGAAGGGTTAGGT
TTTCAATTGGTCAGGGCTTGGGCTAGGGCTAGCGCTAGGGCACCCCCCTT
TTTGTGCCATAGCAGAGTGTTGACAAGGTTTGCTGGAGATCTGTTGGGCA
GTTTGGAAGGGGTTAGGGTTAGGGTTGGATTGGGGGGGGGGAGGGGGGGG
GGAAAGGGAGAGAAACAGTTGGCTTGGCATGCCGTCCTTCTGGTTTCTGG
TGGGTCCTCCCTGATTTATTGTGGTTCTCTACATCCCTCCTGCGTCCCTA
CCTGTGCAGCCCTAAACCTATCCCTGTACATCCTTTGCGCCCCCAGTTTT
GTGGGGGGGGGGTGGGTGCTAACACAGTGTTACCTGTCTGTTGGCATCAC
AGTTTCGTGTGCAACACTGTGTTAGTCAACACAGTGTCGCACCTTTCTGT
TGACAGCGTAATGTCCCCCCTCACATGCCTTGCCACCAGGTGTGCTGGGC
CATGTCTCCAGACGTGTGTTAAACACATTGTTGCGCATGTGCTAACACAG
ATCCAGGTGCTTGTTCATTAAGGCAGTGTTGTATGTTCCCTGCCCACACC
CTGCCCACACGTGCCCACTGGCCCCCTGGTTACGCCTTTTTTTTCTTCAA
TTTGTCCTCCTCAGGCCCTCACCCTAGCCCTAGCCCTTAGCCCTGCCTGC
CCTGCCCTGCCCTGACCTGCCCTGCCCTAAAGTTTGCGGCCCTCTTTTTT
CTCCTCTTTCCTGTTTTTCTGTCCTCGTATTCTTCTGTTTTTCTGTACGC
TTTTGTCATACTGTTCCTTGTTCCTCCCGTCCTCCCATCCTCCCCAGCTC
CTGAACCTCTCCGTCAAGCGATACTGCTCCCCCAAGTACATGCGGGTGTT
TGCTCCGACCAATGGCAAGGTGAGTCACACGGCCCCTGGCCTGAAGCCAA
GCCCAACCCTAACCCTAACCTGAGCCACATCTGCAAACCTGTGTGTTTGC
TCCTGCCAAACTGAAGCCGAGCCAACCCTAAGCCTGGTGCATGTAGTAAT
TCCCTCACCAAAACCCTAACCCTAGGCCCGAACTATGGAACATACCCTAA
CCCTAGGCGTGACCTATAGAGTAATCCCTGACCATAACCCTATCCCTAAC
CCTAACCCTAGGTGCAGGCGGCAGATAAGATGGGGTGCTTGAACCCCTCT
TTGAGCCCCTAGATGTGACAGCAGGAGACAAAACCCTAACCCTAACCATA
GATGTATGACCCTAACCCTGAACCTGAGCCTGAGCCTGAGCCTGACCCCT
CACCTCTGTCCTTTTTACCCTTGCCTGACATGACCCTTTCCTAAACCGTA
ACCCTAAGCCCATCCTCAACCCCCTCCCTCCCTCAACCCTCCTGGGGTTT
CCAGATCGACGGGTGGGCGTCTGCGCTGGGGGTGAAAGACCACAGCCCAG
CATCGTTTGAGCTTGCCGTCACTGCAAACCTCCGGGAGGTCCTGTACACC
ATGAAGGCGAGGGTGTTGGTCATGCTCGATGAGGGAAGGGGAGGGGTGGG
AGAGGGTGGGGGGAAGGGAGGCTACGGGGGCAGGGGGGGGATGTGGGATG
GCGGGGTGGGAGCAGGGATGACCTCTGTGGCGCTGCAGCGAGCAGTGGCT
CAGGCATCAGCCTCATGCAATGAATGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9225:2902..4931+

>mRNA_D-mesarthrocarpus_Contig9225.2.1 ID=mRNA_D-mesarthrocarpus_Contig9225.2.1|Name=mRNA_D-mesarthrocarpus_Contig9225.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=411bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9225:2902..4931+ (Discosporangium mesarthrocarpum MT17_79)
CTGGGGTCGCGGTGGAAGCTGTTCCTCTTCTCCCCCACGCTGAGCTGCCA
GAGGATATCAGAGCTCCTGAACCTCTCCGTCAAGCGATACTGCTCCCCCA
AGTACATGCGGGTGTTTGCTCCGACCAATGGCAAGATCGACGGGTGGGCG
TCTGCGCTGGGGGTGAAAGACCACAGCCCAGCATCGTTTGAGCTTGCCGT
CACTGCAAACCTCCGGGAGGTCCTGTACACCATGAAGGCGAGGGTGTTGG
TCATGCTCGATGAGGGAAGGGGAGGGGTGGGAGAGGGTGGGGGGAAGGGA
GGCTACGGGGGCAGGGGGGGGATGTGGGATGGCGGGGTGGGAGCAGGGAT
GACCTCTGTGGCGCTGCAGCGAGCAGTGGCTCAGGCATCAGCCTCATGCA
ATGAATGGTGA
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