mRNA_D-mesarthrocarpus_Contig9221.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9221.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9221.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: UPI001604A2E6 (uncharacterized protein LOC118438751 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604A2E6)

HSP 1 Score: 97.1 bits (240), Expect = 3.630e-21
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGIVQDATPWYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTKRL 363
            RS +GY   +  S ++  ++ Q +VSLSS+EA++ A+AYG R G+++R  L ELG+ Q  TP + DN  AI+      F+ RT H+D+K  + RE  E +  + +Y+ST +Q ADI TK L
Sbjct:   74 RSTSGYAAFLGESLISWAAQKQEVVSLSSTEAEYIAVAYGAREGMWLRAFLKELGLPQGPTPVFADNTSAIRLVENPEFHKRTKHIDVKYHFVRELNESNQISTRYVSTNEQRADIFTKPL 194          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: A0A226DE54_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DE54_FOLCA)

HSP 1 Score: 97.1 bits (240), Expect = 5.540e-21
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGIVQDATPWYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTKRL 363
            RS +GY   +  S ++  ++ Q +VSLSS+EA++ A+AYG R G+++R  L ELG+ Q  TP + DN  AI+      F+ RT H+D+K  + RE  E +  + +Y+ST +Q ADI TK L
Sbjct:  303 RSTSGYAAFLGESLISWAAQKQEVVSLSSTEAEYIAVAYGAREGMWLRAFLKELGLPQGPTPVFADNTSAIRLVENPEFHKRTKHIDVKYHFVRELNESNQISTRYVSTNEQRADIFTKPL 423          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: UPI0018F858D6 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F858D6)

HSP 1 Score: 94.0 bits (232), Expect = 3.900e-20
Identity = 47/120 (39.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGI-VQDATPWYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTK 357
            RS+TGY + + +S ++ RSK Q +VSLSS+EA++ A+A   +  +++R +L  LG+ +  +TP +CDNR AI  +SI  F+ RT H+++   + RE    D+ ++ +  +T QLAD  TK
Sbjct:  280 RSITGYCVFLGDSLISWRSKKQNVVSLSSTEAEYRAMATTAKEIVHLRRLLSHLGVHISGSTPMHCDNRSAIHIASIPVFHERTKHIEIDCHFVREQFLSDVLSLPFTYSTAQLADFFTK 399          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: UPI000B8AC50F (uncharacterized protein LOC110780658 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AC50F)

HSP 1 Score: 89.4 bits (220), Expect = 7.540e-20
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGIVQDATP--WYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTK 357
            RSVTGY+LL+ NSP++ +SK Q  +S SSSEA++ A++       +I  +L ELGI  D  P  ++CDN+ A+  +    F+  T H+++   +TR+ V + L ++ YL T+ QLADI TK
Sbjct:   53 RSVTGYILLLGNSPISWKSKKQSTISRSSSEAEYRAMSQAASEVTWIVRLLEELGI-HDLQPVHFHCDNQSALHIAKNPIFHEGTKHIEIDCHFTRDKVLEGLIHLSYLRTSNQLADIFTK 172          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: UPI000CD89518 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD89518)

HSP 1 Score: 92.0 bits (227), Expect = 1.070e-19
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGI-VQDATPWYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTKRL 363
            RS TGYLLL+  +P++ +SK Q +VS SS+EA++ A+A  +   +++R +L ELGI V++ATP +CDN+ A   +    F+ RT H++M   + RE VE       +L T  QLAD+LTK L
Sbjct:  202 RSRTGYLLLLGGAPISWKSKKQSVVSRSSAEAEYQAMATTVSEILWVRWLLSELGINVREATPLFCDNQSAKHIAHNPIFHKRTKHVEMDCFFVRERVETKEMAPTWLHTHHQLADLLTKPL 323          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: UPI0009007011 (uncharacterized protein LOC109136561 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0009007011)

HSP 1 Score: 92.0 bits (227), Expect = 1.080e-19
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGIVQ-DATPWYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTKRL 363
            RS+TGYLLL   SP++ +SK QG +S SSSEA++ A+A       ++  +L ELG+ +      +CDN+ A+  +    F+ RT H+D+   +TR+ V + L  + YL T  QLAD+ TK L
Sbjct:  186 RSITGYLLLFGKSPISWKSKKQGTISKSSSEAEYRAMASAAAEVTWVVRLLEELGVTKLKPVTLFCDNQSALHIARNPVFHERTKHIDIDCHFTRDKVLEGLLQLSYLPTNSQLADVFTKSL 307          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: A0A6A4D097_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4D097_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.260e-19
Identity = 47/122 (38.52%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGIVQ-DATPWYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTKRL 363
            RSV+G ++++ N+PV  +SK Q  V+LSS+EA++ A++  ++  ++ R +L ++  +Q +AT  + DN+GAI  +   G++ RT H+D++  + RE VE+    ++Y+ TT QLAD+LTK L
Sbjct:  670 RSVSGVMVMIGNAPVVSKSKFQRTVALSSAEAEYMALSLCVQEVLWTRAMLTDMETLQQNATTIWEDNQGAIALAQNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTTNQLADMLTKAL 791          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: UPI0009019893 (uncharacterized protein LOC109135298 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0009019893)

HSP 1 Score: 91.7 bits (226), Expect = 1.570e-19
Identity = 50/121 (41.32%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGIVQDATP--WYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTK 357
            +SVTGY+LL+  SP++ +SK QG +S SSSEA++ A+A       ++  +L ELG V D TP   +CD++ A+  +    F+ RT H+++   +TR+ V + L  + Y+ TT QLAD+LTK
Sbjct:  137 KSVTGYILLLGQSPISWKSKKQGTISKSSSEAEYWAMASAAAEVTWLVRLLHELG-VDDLTPVTLHCDDQSALHIAKNPVFHERTKHIEIDCHFTRDKVMEGLIQLSYVPTTSQLADVLTK 256          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: UPI001CA84478 (secreted RxLR effector protein 161-like n=1 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA84478)

HSP 1 Score: 89.7 bits (221), Expect = 2.240e-19
Identity = 44/123 (35.77%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGIVQDATPWYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTKRLRK 369
            +S +G++ L+N  P++  SK Q +VSLS++EA++ A+A G +  I++R +L +LGI  +  P Y D + AI+ S  + F+ R+ H+D++  + R+ + +    ++Y+ +  QLADI TK L K
Sbjct:  118 KSRSGFVFLLNGGPISWSSKRQDVVSLSTAEAEYIALANGTKEAIWLRRMLNKLGIKCETAPIYVDKQSAIKLSKNSEFHQRSKHIDVRFHFIRDVIGRKDIEVKYVMSKDQLADIFTKPLPK 240          
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Match: A0A151UDF9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UDF9_CAJCA)

HSP 1 Score: 89.4 bits (220), Expect = 3.150e-19
Identity = 44/124 (35.48%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 RSVTGYLLLVNNSPVA*RSKLQGLVSLSSSEAKWTAIAYGMRHGIYIRGILGELGI-VQDATPWYCDNRGAIQASSITGFNGRTNHMDMKLKYTREYVEKDLFNIQYLSTTKQLADILTKRLRK 369
            +S +GY+ L+++  ++  S+ Q +V+LS++EA++ A AY +  GI+I+ IL ELG+ ++++    CDN  AI+ S     +GR+ H+D++  + R   ++ +  ++Y +T +QLAD+LTK L+K
Sbjct:  111 KSTSGYVFLLSSGAISWSSRKQPIVTLSTTEAEFVAAAYCVCQGIWIKRILEELGVKLEESLSILCDNSSAIKLSKNPVMHGRSKHIDVRFLFLRNLCKEGIIELKYCTTEEQLADVLTKALKK 234          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9221.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001604A2E63.630e-2141.32uncharacterized protein LOC118438751 n=1 Tax=Folso... [more]
A0A226DE54_FOLCA5.540e-2141.32Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]
UPI0018F858D63.900e-2039.17uncharacterized mitochondrial protein AtMg00810-li... [more]
UPI000B8AC50F7.540e-2041.32uncharacterized protein LOC110780658 n=1 Tax=Spina... [more]
UPI000CD895181.070e-1943.44uncharacterized mitochondrial protein AtMg00810-li... [more]
UPI00090070111.080e-1940.16uncharacterized protein LOC109136561 n=1 Tax=Beta ... [more]
A0A6A4D097_9STRA1.260e-1938.52Retrovirus-related Pol polyprotein from transposon... [more]
UPI00090198931.570e-1941.32uncharacterized protein LOC109135298 n=1 Tax=Beta ... [more]
UPI001CA844782.240e-1935.77secreted RxLR effector protein 161-like n=1 Tax=Le... [more]
A0A151UDF9_CAJCA3.150e-1935.48Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9221contigD-mesarthrocarpus_Contig9221:4472..4840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog552467.XP_003193396.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size369
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.4e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VFTM@5234|Tremellales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size249
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791076.5245688-CDS-D-mesarthrocarpus_Contig9221:4471..47201680791076.5245688-CDS-D-mesarthrocarpus_Contig9221:4471..4720Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9221 4472..4720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791076.548092-UTR-D-mesarthrocarpus_Contig9221:4720..48401680791076.548092-UTR-D-mesarthrocarpus_Contig9221:4720..4840Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9221 4721..4840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9221.2.1prot_D-mesarthrocarpus_Contig9221.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9221 4472..4720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9221.2.1

>prot_D-mesarthrocarpus_Contig9221.2.1 ID=prot_D-mesarthrocarpus_Contig9221.2.1|Name=mRNA_D-mesarthrocarpus_Contig9221.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=83bp
MRHGIYIRGILGELGIVQDATPWYCDNRGAIQASSITGFNGRTNHMDMKL
KYTREYVEKDLFNIQYLSTTKQLADILTKRLRK
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mRNA from alignment at D-mesarthrocarpus_Contig9221:4472..4840-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9221.2.1 ID=mRNA_D-mesarthrocarpus_Contig9221.2.1|Name=mRNA_D-mesarthrocarpus_Contig9221.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=369bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9221:4472..4840- (Discosporangium mesarthrocarpum MT17_79)
AGAAGCGTAACCGGCTATCTATTGCTGGTGAACAACTCGCCAGTTGCGTG ACGGTCCAAGCTTCAAGGCCTCGTCTCCCTCTCGAGCTCGGAGGCGAAAT GGACAGCCATTGCGTACGGCATGCGCCACGGCATCTACATCCGTGGCATT TTAGGGGAACTCGGCATAGTGCAAGATGCCACTCCCTGGTACTGCGACAA CCGAGGGGCCATACAGGCGAGCAGCATTACCGGCTTCAACGGCCGGACCA ATCACATGGACATGAAGCTGAAGTACACCCGAGAATATGTGGAAAAGGAC TTGTTCAACATCCAGTACTTGTCAACGACAAAGCAGCTGGCCGACATCCT GACGAAGCGGCTGCGCAAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9221:4472..4840-

>mRNA_D-mesarthrocarpus_Contig9221.2.1 ID=mRNA_D-mesarthrocarpus_Contig9221.2.1|Name=mRNA_D-mesarthrocarpus_Contig9221.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=249bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9221:4472..4840- (Discosporangium mesarthrocarpum MT17_79)
ATGCGCCACGGCATCTACATCCGTGGCATTTTAGGGGAACTCGGCATAGT
GCAAGATGCCACTCCCTGGTACTGCGACAACCGAGGGGCCATACAGGCGA
GCAGCATTACCGGCTTCAACGGCCGGACCAATCACATGGACATGAAGCTG
AAGTACACCCGAGAATATGTGGAAAAGGACTTGTTCAACATCCAGTACTT
GTCAACGACAAAGCAGCTGGCCGACATCCTGACGAAGCGGCTGCGCAAG
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