mRNA_D-mesarthrocarpus_Contig9218.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9218.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9218.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9218.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9218contigD-mesarthrocarpus_Contig9218:603..967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size365
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791075.8500288-UTR-D-mesarthrocarpus_Contig9218:602..6491680791075.8500288-UTR-D-mesarthrocarpus_Contig9218:602..649Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9218 603..649 +
1680791075.8765235-UTR-D-mesarthrocarpus_Contig9218:955..9671680791075.8765235-UTR-D-mesarthrocarpus_Contig9218:955..967Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9218 956..967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791075.86229-CDS-D-mesarthrocarpus_Contig9218:649..9551680791075.86229-CDS-D-mesarthrocarpus_Contig9218:649..955Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9218 650..955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9218.1.1prot_D-mesarthrocarpus_Contig9218.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9218 650..955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9218.1.1

>prot_D-mesarthrocarpus_Contig9218.1.1 ID=prot_D-mesarthrocarpus_Contig9218.1.1|Name=mRNA_D-mesarthrocarpus_Contig9218.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=102bp
MLDFVGRFVVIEDCWIYYQLSPPCRELLTGKDLLTVPGSSLLSSGWGRPY
LRIAQKARCFSKLPHLSSEAKRRSLKGFSGNSCHGGVTTTAPQPGGRWEY
P*
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mRNA from alignment at D-mesarthrocarpus_Contig9218:603..967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9218.1.1 ID=mRNA_D-mesarthrocarpus_Contig9218.1.1|Name=mRNA_D-mesarthrocarpus_Contig9218.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=365bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9218:603..967+ (Discosporangium mesarthrocarpum MT17_79)
GCTTGAGAGACATCCTGAGGTGGTGGGGGAGTTCTCCGTCCGTGCCCATG
CTTGATTTTGTTGGGAGGTTTGTTGTGATCGAAGACTGTTGGATATACTA
TCAGCTTTCTCCTCCGTGCCGTGAACTGCTGACAGGTAAAGATCTACTTA
CTGTGCCTGGGAGCAGTTTATTGAGTAGTGGGTGGGGGCGACCTTACCTA
AGGATAGCACAAAAAGCTCGCTGTTTCTCTAAGTTACCCCATCTAAGTAG
TGAGGCTAAAAGACGCTCTTTGAAGGGGTTCAGTGGGAACAGTTGCCATG
GGGGAGTTACAACTACTGCACCACAGCCCGGAGGTAGGTGGGAATATCCC
TAATTGACATACCCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9218:603..967+

>mRNA_D-mesarthrocarpus_Contig9218.1.1 ID=mRNA_D-mesarthrocarpus_Contig9218.1.1|Name=mRNA_D-mesarthrocarpus_Contig9218.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=306bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9218:603..967+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTTGATTTTGTTGGGAGGTTTGTTGTGATCGAAGACTGTTGGATATA
CTATCAGCTTTCTCCTCCGTGCCGTGAACTGCTGACAGGTAAAGATCTAC
TTACTGTGCCTGGGAGCAGTTTATTGAGTAGTGGGTGGGGGCGACCTTAC
CTAAGGATAGCACAAAAAGCTCGCTGTTTCTCTAAGTTACCCCATCTAAG
TAGTGAGGCTAAAAGACGCTCTTTGAAGGGGTTCAGTGGGAACAGTTGCC
ATGGGGGAGTTACAACTACTGCACCACAGCCCGGAGGTAGGTGGGAATAT
CCCTAA
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