mRNA_D-mesarthrocarpus_Contig9216.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9216.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9216.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9216.3.1 vs. uniprot
Match: D7FWH9_ECTSI (VPS9 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH9_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.500e-37
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 1 
Query:   10 SYAEFLERLARPESRGLLDATRRFVMSILGPDEDGCPPQVGLPGSPTDLDF---------HGTAYIVERCDEFFAAVQDAMSFHPSWACLGYEGVLASRDHLERYVMTKIHQVALGGQLDGAADTAVAQRLSSLQFLTPDDLDVGPRVRDQAMLSLAQ 456
            +Y  FLERL R ES G ++A R F+ SILG +     P  G P + ++ D          +G++++ +RC EFF A+Q+AM  H SWA LGY+ ++A R+HLER+VM+KIH +A G +LDGA D +++ RL SLQFLTP DL+V    R++ +L+LAQ
Sbjct:  154 TYRVFLERLTRSESEGFVEAIRLFLFSILG-NGGAVNPAAGRPRASSNSDIRRETEEVEVYGSSFLSQRCAEFFLAMQNAMGVHTSWAELGYDSLVACREHLERFVMSKIHPLAFGSKLDGAVDASISARLQSLQFLTPHDLNVSVYAREETVLTLAQ 310
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9216.3.1 vs. uniprot
Match: A0A7S2CQI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQI7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.200e-31
Identity = 61/149 (40.94%), Postives = 94/149 (63.09%), Query Frame = 1 
Query:   10 SYAEFLERLARPESRGLLDATRRFVMSILGPDEDGCPPQVGLPGSPTDLDFHGTAYIVERCDEFFAAVQDAMSFHPSWACLGYEGVLASRDHLERYVMTKIHQVALGGQLDGAADTAVAQRLSSLQFLTPDDLDVGPRVRDQAMLSLAQ 456
            +Y +F+ RL RPES+ L    R F+ SILGP+ DG PP  G   S  D DF+G+  +  RC+ FF  ++  MS H SW  LG  G+ ++R++LE+YVMTKI+ +A+ GQ +   D  ++ R+  L F+ P+ L+V P +R++ +  +AQ
Sbjct:   38 TYNDFIGRLMRPESKDLAKLVRTFISSILGPNGDGSPP--GRNQS-VDYDFYGSHMLQRRCELFFKEMETKMSVHVSWKDLGEGGLTSARNNLEKYVMTKIYDIAMAGQANPEEDARLSHRMELLSFIPPEALEVNPNLRNEVVWQIAQ 183
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9216.3.1 vs. uniprot
Match: A0A7S3M7E0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7E0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.430e-16
Identity = 48/151 (31.79%), Postives = 81/151 (53.64%), Query Frame = 1 
Query:    1 AGFSYAEFLERLARPESRGLLDATRRFVMSILGPDEDGCPPQVGLPGSPTDLDFHGTAYIVERCDEFFAAVQDAMSFHPSWACLGYEGVLASRDHLERYVMTKIHQVALGGQLDGAADTAVAQRLSSLQFLTPDDLDVGPRVRDQAMLSLA 453
            A   Y EF+ +  R     L+D TR F+ S++GP+ D  PP VG         F+GT  +  RC +FF  VQ+     P +     E ++ +RD +E+Y+M +I + A    +D   D  +++R+  L FL P+ LD+ P + ++ +L++A
Sbjct:  810 ATMEYEEFISKFTRTTE--LVDMTREFMSSVVGPNGDATPP-VGR--KKLSYVFYGTHKLDVRCRQFFDQVQELFLTWPEFKDETDERLICARDGIEQYIMQRIAEFAFKSTVDAEGDELLSKRMKLLSFLKPEALDIKPDLFNETLLTIA 955
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9216.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWH9_ECTSI1.500e-3746.20VPS9 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2CQI7_9STRA1.200e-3140.94Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3M7E0_9STRA9.430e-1631.79Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9216contigD-mesarthrocarpus_Contig9216:3532..4518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWH9
Preferred nameMIB1
PFAMsAnk,Ank_2,Ank_4,MIB_HERC2,VPS9,WW,ZZ,zf-C3HC4_3
Model size468
Max annot lvl2759|Eukaryota
KEGG koko:K10645
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.47e-38
EggNOG OGsCOG0666@1|root,KOG2319@2759|Eukaryota
Ec32 ortholog descriptionVacuolar sorting protein 9, subgroup
Ec32 orthologEc-26_006550.1
EC2.3.2.27
Descriptionguanyl-nucleotide exchange factor activity
Cds size468
COG categoryGM
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791075.7136872-CDS-D-mesarthrocarpus_Contig9216:3531..37191680791075.7136872-CDS-D-mesarthrocarpus_Contig9216:3531..3719Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9216 3532..3719 +
1680791075.7318482-CDS-D-mesarthrocarpus_Contig9216:3934..40391680791075.7318482-CDS-D-mesarthrocarpus_Contig9216:3934..4039Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9216 3935..4039 +
1680791075.7483175-CDS-D-mesarthrocarpus_Contig9216:4343..45181680791075.7483175-CDS-D-mesarthrocarpus_Contig9216:4343..4518Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9216 4344..4518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9216.3.1prot_D-mesarthrocarpus_Contig9216.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9216 3532..4518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9216.3.1

>prot_D-mesarthrocarpus_Contig9216.3.1 ID=prot_D-mesarthrocarpus_Contig9216.3.1|Name=mRNA_D-mesarthrocarpus_Contig9216.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=156bp
AGFSYAEFLERLARPESRGLLDATRRFVMSILGPDEDGCPPQVGLPGSPT
DLDFHGTAYIVERCDEFFAAVQDAMSFHPSWACLGYEGVLASRDHLERYV
MTKIHQVALGGQLDGAADTAVAQRLSSLQFLTPDDLDVGPRVRDQAMLSL
AQVLK*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9216:3532..4518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9216.3.1 ID=mRNA_D-mesarthrocarpus_Contig9216.3.1|Name=mRNA_D-mesarthrocarpus_Contig9216.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=987bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9216:3532..4518+ (Discosporangium mesarthrocarpum MT17_79)
GCGGGCTTCTCCTACGCCGAATTCCTGGAGCGCCTCGCGCGACCCGAAAG
CAGAGGTTTGCTGGATGCGACACGCCGTTTCGTGATGTCCATACTAGGCC
CGGACGAGGATGGCTGCCCTCCGCAAGTTGGCCTCCCTGGATCACCTACA
GATCTGGACTTCCATGGGACGGCCTACATCGTGGAGAGGTGCATCCTATG
TGTGGCGCAAGGGTCGGATGTTTTGGGAGTCCCAGAGTAATGGCGCTCCT
CACAGAGCACTTCCAAGCTTTAACGTGCTGCCTCCTCTCCCAGTTCCTTA
CTTAGCTGTTGATAGGATACATGTTTCCCTGCCAACCCCATCAATAATCA
ACCTATGAACGAGCACACCGGCGTGTTCGAATCCACCCTAAACTAAACAC
AAGGTGCGACGAGTTTTTCGCGGCTGTCCAAGATGCCATGAGTTTTCACC
CATCATGGGCTTGCCTGGGATACGAAGGCGTGCTGGCAAGCCGGGACCAC
CTTGAAAGGTTCTACAGTAGAGCTCTATGACTACCTTTCGTAGTACTACT
TTACGTACGGAGCACTTTTTACTTCGTAGTCAGGATTTTTTTTATATCTT
TTCGGGGGGCTATGAAAGGGAAGTCCTGCTTCCAGTTGTCAGTGTAATGG
ATTTCCCTCAATCATTTGAGGCTTTTTGTGTCTACGAATCTGGTGTTATA
TTGGAGGAGGCATGGTCACCTCATTCTGAAGAATAGTATAATAGCTGTGC
ACATCATCCAATCCCATCCTTGTTTCACTCAACTTCAGGTTCTCTTGATT
CCCTGGTGTCAGGTATGTGATGACCAAGATACACCAGGTCGCTCTCGGGG
GGCAGCTGGATGGAGCAGCGGACACAGCTGTGGCACAACGCCTCAGCTCT
CTGCAGTTCCTCACCCCTGATGACCTGGATGTGGGGCCACGTGTGCGTGA
CCAGGCTATGCTTTCCCTGGCGCAGGTACTGAAGTGA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9216:3532..4518+

>mRNA_D-mesarthrocarpus_Contig9216.3.1 ID=mRNA_D-mesarthrocarpus_Contig9216.3.1|Name=mRNA_D-mesarthrocarpus_Contig9216.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=468bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9216:3532..4518+ (Discosporangium mesarthrocarpum MT17_79)
GCGGGCTTCTCCTACGCCGAATTCCTGGAGCGCCTCGCGCGACCCGAAAG
CAGAGGTTTGCTGGATGCGACACGCCGTTTCGTGATGTCCATACTAGGCC
CGGACGAGGATGGCTGCCCTCCGCAAGTTGGCCTCCCTGGATCACCTACA
GATCTGGACTTCCATGGGACGGCCTACATCGTGGAGAGGTGCGACGAGTT
TTTCGCGGCTGTCCAAGATGCCATGAGTTTTCACCCATCATGGGCTTGCC
TGGGATACGAAGGCGTGCTGGCAAGCCGGGACCACCTTGAAAGGTATGTG
ATGACCAAGATACACCAGGTCGCTCTCGGGGGGCAGCTGGATGGAGCAGC
GGACACAGCTGTGGCACAACGCCTCAGCTCTCTGCAGTTCCTCACCCCTG
ATGACCTGGATGTGGGGCCACGTGTGCGTGACCAGGCTATGCTTTCCCTG
GCGCAGGTACTGAAGTGA
back to top