mRNA_D-mesarthrocarpus_Contig9203.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9203.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9203.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.750e-20
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 SRGNVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQEEEEGGSAQSRVMIWDPCTG 231
            +R N+GF++S +V+ PCAS+GVVYDK SHSQ L   H  ++SSLAVSPCG  VATGQE +   +     MIWDP TG
Sbjct: 1954 ARDNLGFSNSDRVILPCASVGVVYDKASHSQVLLAGHCGRVSSLAVSPCGRFVATGQEGKNASA-----MIWDPATG 2025          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: A0A0D2M241_9CHLO (Echinoderm microtubule-associated like protein 5 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M241_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 3.440e-12
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   10 NVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQEEEEGGSAQSRVMIWD 219
            N  +T+ G+VVYP A +GVVYD  +H+QT F+ H   I  LA+ P  TL ATGQ     G+ +  V IWD
Sbjct:  234 NAYYTAQGRVVYPVACVGVVYDPRNHTQTFFRGHDDTIRCLALHPAKTLAATGQGSSSEGNGRPCVCIWD 303          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: A0A8J6CAF7_DIALT (HELP domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAF7_DIALT)

HSP 1 Score: 66.6 bits (161), Expect = 5.890e-11
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   10 NVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQEEEEGGSAQSRVMIWDPCT 228
            N+ +T+ GK+VY  A+LG+VYDKG+HSQ  F  H   I SLA+ P G L ATGQ      S   R+++W   T
Sbjct:  279 NLFYTARGKIVYFTAALGIVYDKGTHSQAFFHGHDDDIVSLALHPNGVLCATGQVRSLR-SPSPRILVWSTET 350          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: I7LU47_TETTS (HELP domain protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LU47_TETTS)

HSP 1 Score: 65.9 bits (159), Expect = 1.120e-10
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 RGNVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQEEEEGGSAQSRVMIWDPCTGEV 237
            RGN+ +TSSGK+VY  A+LG+V D  +++QT F  HT  I SL + P G LVATG+        +  + IWD  T EV
Sbjct: 1778 RGNLRYTSSGKIVYNAAALGIVLDVENNTQTFFNKHTDDIISLDLHPDGNLVATGEI-----GPKPYIYIWDSETKEV 1850          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: A0A485LR91_9STRA (Aste57867_24752 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LR91_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.900e-10
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    4 RGNVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQEEEEGGSAQSRVMIWDP--CTGEVSLLP 249
            RG +G+T S ++V     +G+ YD+  H+Q  +  H   + S+A+SP G  VATG+E     +++ R+ +WDP  CT  V++LP
Sbjct: 1631 RGTLGYTKSKRLVNTAGKIGISYDRKRHAQAFYMAHAAPLISMALSPDGMFVATGEEVLTLAASEPRIHVWDPAACTP-VAVLP 1713          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: A0A1R2BP96_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BP96_9CILI)

HSP 1 Score: 62.0 bits (149), Expect = 2.540e-9
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 SRGNVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQEEEEGGSAQSRVMIWDPCT 228
            SR N+ FTSSGKV++P A LGVV +  + SQ  F  H   + S+++ P   + ATGQ    G S +  + +WD  T
Sbjct:  938 SRNNLKFTSSGKVIFPAAGLGVVMNIETKSQEYFTMHDDDVVSISIHPGRKIAATGQTAHVGKSTKIDLFVWDTET 1013          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: A0A662Y7A1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7A1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.480e-9
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   34 KVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQEEEEGGSAQ-SRVMIWDPCT 228
            +VV+P A +GV YD+  H Q  +  HTR I SLA SPCG  VA+G+   E    +  R+ +W+P T
Sbjct: 1999 RVVFPAACVGVSYDRREHRQQFYFGHTRPICSLAASPCGAFVASGEMCTESFVHEWPRIHVWEPAT 2064          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: K3XBQ4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBQ4_GLOUD)

HSP 1 Score: 58.2 bits (139), Expect = 5.770e-8
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    4 RGNVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQEEEEGGSAQS-RVMIWDP--CT 228
            R NV ++ +  V+Y    +GV YD+ +H+Q  ++NH+R I SLA S  G+ VATG+   E    +  RV IW+P  CT
Sbjct: 1594 RNNVVYSKTKHVIYHTGCIGVHYDRRTHAQKFYQNHSRSIVSLAASRDGSYVATGEICSENLQQEHPRVHIWEPTSCT 1671          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: A0A2D4BE44_PYTIN (EF-hand domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BE44_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 7.900e-8
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    4 RGNVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCGTLVATGQE-EEEGGSAQSRVMIWDPCT 228
            R N  +  +  VV+  ASLGV YD+ +HSQ  ++ HTR I SLA S  G+ +ATG+   E     + R+ +W+P +
Sbjct: 1789 RNNAVYAKTKHVVFHTASLGVRYDRRTHSQLFYRGHTRPIVSLAASRGGSFIATGEICREHLLHERPRIHVWEPTS 1864          
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Match: A0A6H5J6G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6G6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.050e-7
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 SRGNVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHT-RQISSLAVSPCGTLVATGQEEEEGGSAQSRVMIWDPCTG-EVSLLP 249
            +RG++ +   G +VYP A++GVVY + +HSQ  F+ H  +QI+ L VSP    VA+G+        +  V +WD  T  E+  LP
Sbjct:  734 ARGSLAYNRVGGLVYPAATIGVVYSRKTHSQGYFRGHAGKQITFLRVSPNQRFVASGE-----AGTRPTVRVWDAATSVELCTLP 813          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9203.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y1_ECTSI2.750e-2057.14N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A0D2M241_9CHLO3.440e-1247.14Echinoderm microtubule-associated like protein 5 n... [more]
A0A8J6CAF7_DIALT5.890e-1146.58HELP domain-containing protein n=2 Tax=Diacronema ... [more]
I7LU47_TETTS1.120e-1046.15HELP domain protein n=1 Tax=Tetrahymena thermophil... [more]
A0A485LR91_9STRA3.900e-1036.90Aste57867_24752 protein n=1 Tax=Aphanomyces stella... [more]
A0A1R2BP96_9CILI2.540e-940.79Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A662Y7A1_9STRA3.480e-943.94Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
K3XBQ4_GLOUD5.770e-841.03Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BE44_PYTIN7.900e-839.47EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
A0A6H5J6G6_9PHAE1.050e-737.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9203contigD-mesarthrocarpus_Contig9203:227..1118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0Y1
PFAMsANAPC4_WD40,EF-hand_7,EF-hand_8,HELP,WD40
Model size249
Max annot lvl2759|Eukaryota
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.51e-21
EggNOG OGsCOG2319@1|root,KOG2106@2759|Eukaryota
Descriptionmicrotubule binding
Cds size249
COG categoryO
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791074.5815985-CDS-D-mesarthrocarpus_Contig9203:226..3041680791074.5815985-CDS-D-mesarthrocarpus_Contig9203:226..304Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9203 227..304 +
1680791074.5996158-CDS-D-mesarthrocarpus_Contig9203:947..11181680791074.5996158-CDS-D-mesarthrocarpus_Contig9203:947..1118Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9203 948..1118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9203.1.1prot_D-mesarthrocarpus_Contig9203.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9203 227..1118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9203.1.1

>prot_D-mesarthrocarpus_Contig9203.1.1 ID=prot_D-mesarthrocarpus_Contig9203.1.1|Name=mRNA_D-mesarthrocarpus_Contig9203.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=83bp
SRGNVGFTSSGKVVYPCASLGVVYDKGSHSQTLFKNHTRQISSLAVSPCG
TLVATGQEEEEGGSAQSRVMIWDPCTGEVSLLP
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mRNA from alignment at D-mesarthrocarpus_Contig9203:227..1118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9203.1.1 ID=mRNA_D-mesarthrocarpus_Contig9203.1.1|Name=mRNA_D-mesarthrocarpus_Contig9203.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=892bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9203:227..1118+ (Discosporangium mesarthrocarpum MT17_79)
TCCAGGGGCAATGTGGGGTTCACATCCTCGGGCAAGGTGGTGTACCCTTG TGCCTCCCTTGGCGTGGTCTATGACAAGGTGAGGGAAGTTTAAGCTAGGA CTTTTCGGGTTAGTGTTAGGGTTAGCTTAGGGTTGGGTAAGGGGTTAGGG TTGGGCCCTTAAGTTCATGACAAGGTGAAAGGCAACTAGGGTCAGGGTCA TGGTCAGAGTTAGAATCAGGGTTTCACCTAGGCCCTGTGGCCTACAACAT TGTGGGGGATTAGGGCTAGGTTCAGGGATGGTATTGGGGCTAAGTCTTGG CTAATAGGTTAGGATTGAGGTATGGGATAGGGACAGGGATGGGCATAGAG TTTGAGATAGGGATAGGGATAGGGTTAGGTTAGGTTTAGGCCCAAAAAGT GAACTTCGAAATAGGACCGGCCACCACCGCCACTGCCGCCGCCTAAAAAA AGAAAACCACAGCACAACACCCAGGCCATGATCCCCCCTCCGACTCCCTG CCACGCCACCTGCCTATCTTCCCTCATCTCCTACTCTCCCAATCTCCAAT ATCCAATCTCCCAATCTCCCAACCACCCGTCCCCCATCTCCAATTTCCTA ATCTCCAGTCTCCCAATCTCCCAGTCTCCCAATCCCCTATCTACAATCTC CCAATCTCCAGTCTCCCATCTACAATCTCCCACCTCCCATCTCTTGTCCC CCACTCCCACTCCGCTGGCAGGGAAGCCACTCCCAGACCCTCTTCAAGAA TCACACAAGACAGATCTCCAGCCTGGCCGTCTCCCCATGCGGTACCCTCG TGGCCACAGGGCAGGAGGAGGAGGAGGGGGGCAGCGCCCAGAGCCGGGTG ATGATCTGGGACCCGTGCACTGGGGAGGTGAGCCTCTTACCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9203:227..1118+

>mRNA_D-mesarthrocarpus_Contig9203.1.1 ID=mRNA_D-mesarthrocarpus_Contig9203.1.1|Name=mRNA_D-mesarthrocarpus_Contig9203.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=249bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9203:227..1118+ (Discosporangium mesarthrocarpum MT17_79)
TCCAGGGGCAATGTGGGGTTCACATCCTCGGGCAAGGTGGTGTACCCTTG
TGCCTCCCTTGGCGTGGTCTATGACAAGGGAAGCCACTCCCAGACCCTCT
TCAAGAATCACACAAGACAGATCTCCAGCCTGGCCGTCTCCCCATGCGGT
ACCCTCGTGGCCACAGGGCAGGAGGAGGAGGAGGGGGGCAGCGCCCAGAG
CCGGGTGATGATCTGGGACCCGTGCACTGGGGAGGTGAGCCTCTTACCC
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