mRNA_D-mesarthrocarpus_Contig9191.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9191.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9191.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9191.2.1 vs. uniprot
Match: A0A835ZAH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAH3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.520e-7
Identity = 43/96 (44.79%), Postives = 52/96 (54.17%), Query Frame = 2 
Query:   17 SALRMLWPRMIFLLRDRAIHRPEGAA----GGA-----LEPVLALLSEAAAAPENRAHGGHAGVFALRPETLPGQGEECVGLLALSSVCNSLAFSS 277
            + LR LWPR +F+LRDR I RP  A     GGA     LEP+L LL E    P   A GG     A R E L    E C+ +LALS++C S AF +
Sbjct:  521 AQLRGLWPRQVFVLRDRVIQRPAAAVVEEGGGAACEGTLEPILDLLGEGTR-PAGGALGG-----AEREEGL--SQEACIAVLALSAICRSDAFQA 608
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9191.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAH3_9STRA3.520e-744.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9191contigD-mesarthrocarpus_Contig9191:3709..4594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size506
Hectar predicted targeting categoryother localisation
Exons2
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791073.0238893-CDS-D-mesarthrocarpus_Contig9191:3708..39991680791073.0238893-CDS-D-mesarthrocarpus_Contig9191:3708..3999Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9191 3709..3999 -
1680791073.0372648-CDS-D-mesarthrocarpus_Contig9191:4380..45661680791073.0372648-CDS-D-mesarthrocarpus_Contig9191:4380..4566Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9191 4381..4566 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791073.0495315-UTR-D-mesarthrocarpus_Contig9191:4566..45941680791073.0495315-UTR-D-mesarthrocarpus_Contig9191:4566..4594Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9191 4567..4594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9191.2.1prot_D-mesarthrocarpus_Contig9191.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9191 3709..4566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9191.2.1

>prot_D-mesarthrocarpus_Contig9191.2.1 ID=prot_D-mesarthrocarpus_Contig9191.2.1|Name=mRNA_D-mesarthrocarpus_Contig9191.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=159bp
MLWPRMIFLLRDRAIHRPEGAAGGALEPVLALLSEAAAAPENRAHGGHAG
VFALRPETLPGQGEECVGLLALSSVCNSLAFSSGGRAPRRAQANGRDMGI
VPAVTVRNGVAVKGGSPGRLTGGVASPATWSALRQSVRELLGPLEAFMDG
VLGSLSSSS
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9191:3709..4594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9191.2.1 ID=mRNA_D-mesarthrocarpus_Contig9191.2.1|Name=mRNA_D-mesarthrocarpus_Contig9191.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=886bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9191:3709..4594- (Discosporangium mesarthrocarpum MT17_79)
AGTGGAAGAACCACCCTCTGCCCTGCGCATGCTCTGGCCACGAATGATAT
TTCTTCTACGCGACCGTGCCATTCACCGCCCAGAGGGGGCTGCCGGGGGC
GCCCTGGAGCCTGTGCTGGCTCTTCTGAGCGAGGCCGCCGCCGCCCCTGA
GAATAGGGCACACGGTGGCCACGCTGGCGTTTTTGCCTTGCGGCCCGAGA
CTCTCCCCGGCCAGGTCTGTTACCCAGGGCTGGGACTTGGATTAGGGGTT
TAGGGTTAGGGTTAGGGTTAGGTGGGATTTGGTTAAGGGTGGCTTGTTGG
TGGCAGTGGGGGAGGGGAGGGGGGGGGGGGCACGCAGGGGTTGGCAACAC
ATTGTGTTCTTATGCCTATTGTGTTCTTATGGATATTGTCATTGAAGTAC
GATAACTGTGATCCAGTGACGCTCACACACACCCTCACTGGACAGAATCC
CTTACCCTTGCCCCCACCCTAACTCTCACCATAATGCTCACCCAAATACT
TCCCCTAACCCTTACCCTGTAGCCCTTATCCTGGACCCTAACCCCAACCC
TGAGCACGCCCGGCCTTCCCCCCCAACAACAACCTTCTCCTGCAGGGAGA
GGAATGCGTGGGATTGCTGGCTTTGTCATCCGTGTGCAATAGCCTGGCGT
TCTCCTCTGGAGGCAGGGCACCCCGGCGGGCCCAGGCCAACGGAAGGGAC
ATGGGCATAGTGCCTGCCGTAACTGTTAGGAATGGTGTAGCTGTCAAGGG
AGGCAGCCCTGGAAGGCTCACGGGGGGGGTGGCATCACCAGCCACGTGGT
CAGCGTTGCGTCAGAGTGTGAGGGAGTTGCTGGGGCCACTGGAAGCATTT
ATGGACGGTGTCTTGGGTTCTCTCTCCTCTTCATCG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9191:3709..4594-

>mRNA_D-mesarthrocarpus_Contig9191.2.1 ID=mRNA_D-mesarthrocarpus_Contig9191.2.1|Name=mRNA_D-mesarthrocarpus_Contig9191.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=477bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9191:3709..4594- (Discosporangium mesarthrocarpum MT17_79)
ATGCTCTGGCCACGAATGATATTTCTTCTACGCGACCGTGCCATTCACCG
CCCAGAGGGGGCTGCCGGGGGCGCCCTGGAGCCTGTGCTGGCTCTTCTGA
GCGAGGCCGCCGCCGCCCCTGAGAATAGGGCACACGGTGGCCACGCTGGC
GTTTTTGCCTTGCGGCCCGAGACTCTCCCCGGCCAGGGAGAGGAATGCGT
GGGATTGCTGGCTTTGTCATCCGTGTGCAATAGCCTGGCGTTCTCCTCTG
GAGGCAGGGCACCCCGGCGGGCCCAGGCCAACGGAAGGGACATGGGCATA
GTGCCTGCCGTAACTGTTAGGAATGGTGTAGCTGTCAAGGGAGGCAGCCC
TGGAAGGCTCACGGGGGGGGTGGCATCACCAGCCACGTGGTCAGCGTTGC
GTCAGAGTGTGAGGGAGTTGCTGGGGCCACTGGAAGCATTTATGGACGGT
GTCTTGGGTTCTCTCTCCTCTTCATCG
back to top