mRNA_D-mesarthrocarpus_Contig919.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig919.7.1
Unique NamemRNA_D-mesarthrocarpus_Contig919.7.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: D7FZK5_ECTSI (AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK5_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 8.450e-31
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIEV 210
            MFEK+LQD+VKGIRANKRDPSDYISA+IAEIK+EL+SSD F+KAQAIRKLTYLQM+GYD SWA+F VIEV
Sbjct:    1 MFEKSLQDVVKGIRANKRDPSDYISATIAEIKVELRSSDAFIKAQAIRKLTYLQMLGYDMSWAAFYVIEV 70
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: A0A835Z6U0_9STRA (Clathrin/coatomer adaptor, adaptin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U0_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.600e-29
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIEV 210
            MFEK LQDLVKGIRA+KRDPS +IS SIAEIK+EL+S DPF+KAQA+RKLTYLQM+GYD SWA+F+VIEV
Sbjct:    1 MFEKTLQDLVKGIRAHKRDPSAFISQSIAEIKLELRSVDPFIKAQAVRKLTYLQMIGYDMSWAAFSVIEV 70
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: W7TQ06_9STRA (Ap-3 complex subunit delta-1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ06_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.670e-28
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIEV 210
            MFEK+LQDLVKGIR++KRDP+ +IS SI EIK+EL+S DPF+KAQA+RKLTYLQMMGYD SWASFAV+EV
Sbjct:    1 MFEKSLQDLVKGIRSHKRDPTVFISQSIQEIKVELRSVDPFVKAQAVRKLTYLQMMGYDMSWASFAVVEV 70
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: A0A4D9D9W4_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9W4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.670e-28
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIEV 210
            MFEK+LQDLVKGIR++KRDP+ +IS SI EIK+EL+S DPF+KAQA+RKLTYLQMMGYD SWASFAV+EV
Sbjct:    1 MFEKSLQDLVKGIRSHKRDPTVFISQSIQEIKVELRSVDPFVKAQAVRKLTYLQMMGYDMSWASFAVVEV 70
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: A0A7S2UXN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXN7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.220e-27
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIEV 210
            MFEK+LQDLVKGIRA+KRDPS +IS +I+EIK ELKSSDPF KA A+RKL+YLQM+GYD SWASF+V+EV
Sbjct:    3 MFEKSLQDLVKGIRAHKRDPSAFISQAISEIKNELKSSDPFAKAMAVRKLSYLQMLGYDMSWASFSVVEV 72
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: A0A7S3ZNU4_9STRA (AP-3 complex subunit delta n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNU4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.970e-27
Identity = 51/69 (73.91%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIE 207
            MFEK+LQDLVKGIRA+KRDP+ ++S +IAE K ELK+ DPF+KAQA+RKLTYLQM+GYD SWASFA++E
Sbjct:    1 MFEKSLQDLVKGIRAHKRDPAAFVSTAIAECKKELKNVDPFVKAQAVRKLTYLQMLGYDVSWASFAIVE 69
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: A0A7S2MSV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSV1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.500e-27
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    4 FEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIEV 210
            FEK+LQD+VKGIRANKRDPS YIS  I E K ELK SDPF+KA AIRKLTYLQMMGYD SWASF V+EV
Sbjct:    1 FEKSLQDVVKGIRANKRDPSPYISQVIGECKKELKDSDPFVKALAIRKLTYLQMMGYDMSWASFQVVEV 69
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: A0A812VEC3_SYMMI (AP3D1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VEC3_SYMMI)

HSP 1 Score: 104 bits (260), Expect = 6.540e-26
Identity = 47/70 (67.14%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIEV 210
            +F+K L D+VKGIRA +RDPS +IS SIAEIK EL+ +DPF+KA+A+RKLTY+QMMGY+ SWASF+++EV
Sbjct:   11 VFQKTLPDIVKGIRAQRRDPSSFISESIAEIKRELQETDPFVKAEAVRKLTYIQMMGYNVSWASFSIMEV 80
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: A0A2P4YHD0_9STRA (AP-3 complex subunit delta (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHD0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.380e-25
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIEV 210
            MFEKNLQDLVKGIR+ K D + YIS ++ EIK EL+S+DPF+KAQA+RKLTYL M+GYD  WA+F V+EV
Sbjct:    1 MFEKNLQDLVKGIRSAKGDVTVYISQALQEIKAELRSTDPFVKAQAVRKLTYLHMLGYDMCWAAFHVVEV 70
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BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Match: A0A6S9KYZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KYZ5_HETAK)

HSP 1 Score: 107 bits (266), Expect = 2.050e-25
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKLTYLQMMGYDASWASFAVIE 207
            MFEK+LQDLVKGIR +KRDP  +IS +I+EIK ELKS D FLK QAIRKLTYLQM+GYD SWASF ++E
Sbjct:    1 MFEKSLQDLVKGIRTHKRDPGPFISQAISEIKQELKSKDDFLKGQAIRKLTYLQMLGYDMSWASFLIVE 69
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig919.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK5_ECTSI8.450e-3184.29AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z6U0_9STRA4.600e-2980.00Clathrin/coatomer adaptor, adaptin-like protein n=... [more]
W7TQ06_9STRA1.670e-2878.57Ap-3 complex subunit delta-1 n=2 Tax=Nannochlorops... [more]
A0A4D9D9W4_9STRA1.670e-2878.57Adaptin_N domain-containing protein n=1 Tax=Nannoc... [more]
A0A7S2UXN7_9STRA1.220e-2777.14Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3ZNU4_9STRA6.970e-2773.91AP-3 complex subunit delta n=4 Tax=Pelagomonas cal... [more]
A0A7S2MSV1_9STRA9.500e-2779.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A812VEC3_SYMMI6.540e-2667.14AP3D1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A2P4YHD0_9STRA1.380e-2568.57AP-3 complex subunit delta (Fragment) n=1 Tax=Phyt... [more]
A0A6S9KYZ5_HETAK2.050e-2573.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig919contigD-mesarthrocarpus_Contig919:24901..25589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZK5
Preferred nameAP3D1
PFAMsAP3D1,Adaptin_N
Model size210
Max annot lvl2759|Eukaryota
KEGG koko:K12396
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0002376,GO:0002475,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006900,GO:0006903,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008057,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008340,GO:0008565,GO:0009058,GO:0009605,GO:0009893,GO:0009987,GO:0010008,GO:0010256,GO:0010259,GO:0010468,GO:0010604,GO:0010628,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016182,GO:0016192,GO:0016197,GO:0016482,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019748,GO:0019882,GO:0019884,GO:0021700,GO:0022407,GO:0022409,GO:0030001,GO:0030117,GO:0030119,GO:0030123,GO:0030154,GO:0030155,GO:0030424,GO:0030705,GO:0031090,GO:0031410,GO:0031503,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032594,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033060,GO:0033267,GO:0033365,GO:0034613,GO:0035646,GO:0036465,GO:0036466,GO:0042440,GO:0042441,GO:0042592,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044550,GO:0045184,GO:0045202,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046903,GO:0046907,GO:0047496,GO:0048003,GO:0048007,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0048499,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0050931,GO:0051094,GO:0051136,GO:0051138,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0060255,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0061024,GO:0061088,GO:0061462,GO:0065007,GO:0065008,GO:0070142,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072511,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098830,GO:0098930,GO:0098943,GO:0099003,GO:0099111,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099532,GO:0099632,GO:0099637,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902105,GO:1902107,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990019,GO:2000026
Exons2
Evalue1.39e-31
EggNOG OGsCOG4354@1|root,KOG1059@2759|Eukaryota
Descriptionintracellular protein transport
Cds size210
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791072.8851771-CDS-D-mesarthrocarpus_Contig919:24900..250381680791072.8851771-CDS-D-mesarthrocarpus_Contig919:24900..25038Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig919 24901..25038 +
1680791072.898287-CDS-D-mesarthrocarpus_Contig919:25517..255891680791072.898287-CDS-D-mesarthrocarpus_Contig919:25517..25589Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig919 25518..25589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig919.7.1prot_D-mesarthrocarpus_Contig919.7.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig919 24901..25589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig919.7.1

>prot_D-mesarthrocarpus_Contig919.7.1 ID=prot_D-mesarthrocarpus_Contig919.7.1|Name=mRNA_D-mesarthrocarpus_Contig919.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=70bp
MFEKNLQDLVKGIRANKRDPSDYISASIAEIKIELKSSDPFLKAQAIRKL
TYLQMMGYDASWASFAVIEV
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mRNA from alignment at D-mesarthrocarpus_Contig919:24901..25589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig919.7.1 ID=mRNA_D-mesarthrocarpus_Contig919.7.1|Name=mRNA_D-mesarthrocarpus_Contig919.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=689bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig919:24901..25589+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTTGAGAAAAACTTGCAAGACCTCGTGAAGGGCATACGTGCCAATAA
GCGGGATCCGTCGGACTACATCTCAGCGTCCATCGCCGAGATCAAGATAG
AACTGAAGTCCTCCGACCCCTTTCTCAAAGCACAAGCGGTAAGCGAGGCC
TTCTTTGAGTGTTTGTCATCGCTCTGCCGGTGCCCAGCTTTTTTTACGCC
CAATGGACCCTGCTGAACTACCCACCCCCGTGTAGTGACCTCCCCCTGAT
TTCCATGCGTAGTTTAAACGTGAAGGGACACAGGGAGGGGGTTTACCTCG
TCCGTCTACTAAAGCGGCTTCAGTCGCTACGTTTTGCCCCCGCCTTGGCT
GGCCGTTCTTTGCCAGCCTCGTGCTATTCCCTTCCTGCGTGTGTTACTTG
GTGGAAATTTGCCCACATAGACTGTGTGGGTTTGAAGGACGATCGTGAAA
CCAATTCAAAGAAGTAGACGATAACCCGCGTTTTAACGTGCCCAGCGACA
CTCTGGACAGAATGCAGCCGCATCATATCTCCGCATACCCACGAGCTCTG
TGAGCTGCAAAAGCGTGCTTTTAACCCCTGCAGTCTACATCCCCTCTGCC
CTCCCTTGTACTCTCAGATACGCAAGCTGACTTACTTGCAGATGATGGGC
TACGATGCGAGCTGGGCATCTTTTGCCGTCATCGAGGTA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig919:24901..25589+

>mRNA_D-mesarthrocarpus_Contig919.7.1 ID=mRNA_D-mesarthrocarpus_Contig919.7.1|Name=mRNA_D-mesarthrocarpus_Contig919.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=210bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig919:24901..25589+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTTGAGAAAAACTTGCAAGACCTCGTGAAGGGCATACGTGCCAATAA
GCGGGATCCGTCGGACTACATCTCAGCGTCCATCGCCGAGATCAAGATAG
AACTGAAGTCCTCCGACCCCTTTCTCAAAGCACAAGCGATACGCAAGCTG
ACTTACTTGCAGATGATGGGCTACGATGCGAGCTGGGCATCTTTTGCCGT
CATCGAGGTA
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