mRNA_D-mesarthrocarpus_Contig9176.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9176.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9176.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9176.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9176contigD-mesarthrocarpus_Contig9176:1243..2438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size630
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionDNA-binding domain
Ec32 orthologEc-16_001860.1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791071.3279176-CDS-D-mesarthrocarpus_Contig9176:1242..15071680791071.3279176-CDS-D-mesarthrocarpus_Contig9176:1242..1507Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9176 1243..1507 -
1680791071.3388119-CDS-D-mesarthrocarpus_Contig9176:2073..22401680791071.3388119-CDS-D-mesarthrocarpus_Contig9176:2073..2240Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9176 2074..2240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791071.3527677-UTR-D-mesarthrocarpus_Contig9176:2240..24381680791071.3527677-UTR-D-mesarthrocarpus_Contig9176:2240..2438Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9176 2241..2438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9176.3.1prot_D-mesarthrocarpus_Contig9176.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9176 1243..2240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9176.3.1

>prot_D-mesarthrocarpus_Contig9176.3.1 ID=prot_D-mesarthrocarpus_Contig9176.3.1|Name=mRNA_D-mesarthrocarpus_Contig9176.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=144bp
MTAGWVARSRQRCWPATESANTRTPGMPVAPAVPEKIQAESFNAAELEKC
LETNSRAMVELARLHELAARVRAGAHAKDVGKADSAKWKGKRGVEEGEKE
AKNIGGPSASAEGGKEAGGGVEVVETKADGGKGMVREAGTAEDK
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mRNA from alignment at D-mesarthrocarpus_Contig9176:1243..2438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9176.3.1 ID=mRNA_D-mesarthrocarpus_Contig9176.3.1|Name=mRNA_D-mesarthrocarpus_Contig9176.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1196bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9176:1243..2438- (Discosporangium mesarthrocarpum MT17_79)
GAATTGCGCGAGCTCGCGTGACTAATCATATTTTCCCCCTTGTATTGCAT
CCGTAACACGGGTTTGTCTGTATCTACCGATGATTTCAAAATTGAAACGT
GTTCGTAGATAGGCATCGCGGGCAGACACACCTTGTTTCACGTTAACGGC
CTCCGAAGTGACGAGTAGGGAATTCCAGGTCGCCCTGAAGACGGCCAGAT
GACAGCCGGATGGGTGGCCAGGTCCCGGCAGAGGTGTTGGCCAGCAACAG
AGAGCGCTAACACCAGGACTCCGGGGATGCCCGTGGCTCCTGCGGTGCCA
GAAAAAATACAGGCCGAGTCTTTTAATGCAGCTGAACTGGAGAAATGCTT
GGAGACGAATTCCAGGTGCGGACCACTCGATATCTAGTCATTATCCTAAG
CACGTCGGGGAGTTGCCGGGAAGTCTACCAAAGATGAATCCGCACCCACA
GTGTTGGTGTGACCCTAGTGTTAAGCCTCGTGGAGTATTGAAGAGGCAAG
CGTCCGACGAATCGGACGAAATTTACTTACCCCAATCAATTTGCCGTGCA
GCCCTCCCTTGTTGGCGTTCAAAATGTGGCCTAACGGCTCCAACTCCATT
CAAAAGGTACGTCCTGCATGTCAGTCGACGCGACATTTTTTCCAACGGCC
GACGCGCGTTGGGGGGCAGGTATCCTTTTGTTGCCCCCCGGCATGCACTT
TCCAAAAAAAAATCTGGGTATTGTAATTTTCCTATAAATGGGGCTATTTA
GGCGTGAGGGCCTCTTAAACACCCTGTACAATCCTGAATTTGACTCAAGG
ACTCCAACTAAGCACTGCGCACGCCGACAGCAGATCATGCAAAAGACATA
CTACGTGAAGTCAGCACTGAACCGAGCCTCACCTCGCAAGGCGAACGGAT
CCCTTGTGCCACCCCTCTCCGCTCCAACTAGGGCCATGGTAGAGCTTGCG
CGCCTGCATGAGCTGGCCGCCAGAGTGAGGGCAGGGGCCCACGCTAAGGA
TGTGGGCAAGGCCGACAGCGCAAAGTGGAAGGGGAAGCGGGGCGTGGAAG
AGGGAGAGAAGGAGGCAAAAAACATTGGCGGGCCATCGGCATCAGCCGAG
GGTGGGAAGGAGGCAGGGGGTGGGGTAGAGGTGGTGGAGACTAAAGCAGA
TGGTGGTAAGGGGATGGTGAGGGAAGCGGGGACCGCGGAGGACAAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9176:1243..2438-

>mRNA_D-mesarthrocarpus_Contig9176.3.1 ID=mRNA_D-mesarthrocarpus_Contig9176.3.1|Name=mRNA_D-mesarthrocarpus_Contig9176.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=432bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9176:1243..2438- (Discosporangium mesarthrocarpum MT17_79)
ATGACAGCCGGATGGGTGGCCAGGTCCCGGCAGAGGTGTTGGCCAGCAAC
AGAGAGCGCTAACACCAGGACTCCGGGGATGCCCGTGGCTCCTGCGGTGC
CAGAAAAAATACAGGCCGAGTCTTTTAATGCAGCTGAACTGGAGAAATGC
TTGGAGACGAATTCCAGGGCCATGGTAGAGCTTGCGCGCCTGCATGAGCT
GGCCGCCAGAGTGAGGGCAGGGGCCCACGCTAAGGATGTGGGCAAGGCCG
ACAGCGCAAAGTGGAAGGGGAAGCGGGGCGTGGAAGAGGGAGAGAAGGAG
GCAAAAAACATTGGCGGGCCATCGGCATCAGCCGAGGGTGGGAAGGAGGC
AGGGGGTGGGGTAGAGGTGGTGGAGACTAAAGCAGATGGTGGTAAGGGGA
TGGTGAGGGAAGCGGGGACCGCGGAGGACAAG
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