mRNA_D-mesarthrocarpus_Contig914.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig914.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig914.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 55.1 bits (131), Expect = 5.110e-8
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    7 HETHGHFEDAEPLYQRSLAVREKVLGPEHPVVATTL 114
            +E+ G +E+AEPLYQR+L +RE VLGP+HP VATTL
Sbjct:    1 YESQGKYEEAEPLYQRALKIRETVLGPDHPSVATTL 36
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 55.1 bits (131), Expect = 7.300e-7
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    7 HETHGHFEDAEPLYQRSLAVREKVLGPEHPVVATTL 114
            +E+ G +E+AEPLYQR+L +RE VLGP+HP VATTL
Sbjct:    1 YESQGKYEEAEPLYQRALKIRETVLGPDHPSVATTL 36
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: D7FWM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM6_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.950e-6
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 ETHGHFEDAEPLYQRSLAVREKVLGPEHPVVATTLK 117
            E+ G +E+AEPLY RS A  EKVLGPEHP VAT LK
Sbjct:   43 ESQGKYEEAEPLYDRSQATPEKVLGPEHPDVATVLK 78
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.060e-6
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   19 GHFEDAEPLYQRSLAVREKVLGPEHPVVATTL 114
            G ++DAE LY+RSLA+REKVLGPEHP VA +L
Sbjct:   17 GKYDDAEQLYERSLAIREKVLGPEHPDVAQSL 48
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.170e-6
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   19 GHFEDAEPLYQRSLAVREKVLGPEHPVVATTLK-WVGLLGFLS 144
            G +++AEPLY+RSLA+ EKV GP+HP VAT L  WV LL   S
Sbjct:  352 GKYDEAEPLYKRSLAIDEKVYGPDHPDVATALNNWVRLLSICS 394
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: U9W4Q0_9CYAN (Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9W4Q0_9CYAN)

HSP 1 Score: 49.7 bits (117), Expect = 9.240e-6
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   19 GHFEDAEPLYQRSLAVREKVLGPEHPVVATTL 114
            G +E+AEPLYQRSL +RE+ LGP+HP V T+L
Sbjct:    3 GRYEEAEPLYQRSLGIREEQLGPQHPDVVTSL 34
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.010e-5
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   19 GHFEDAEPLYQRSLAVREKVLGPEHPVVATTL 114
            G + +AEPLY+RSLA++EKVLGPEHP VAT+L
Sbjct:  694 GKYAEAEPLYERSLAIQEKVLGPEHPDVATSL 725
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: A0A3B8JJF2_9CYAN (Tetratricopeptide repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 48.1 bits (113), Expect = 1.530e-5
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    7 HETHGHFEDAEPLYQRSLAVREKVLGPEHPVVATTL 114
            ++  G++  AEPLYQRSLA+ EK LG EHP VAT+L
Sbjct:    6 YKVQGNYSQAEPLYQRSLAIWEKALGSEHPNVATSL 41
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: A0A1D2PCU9_9CYAN (CHAT domain-containing protein (Fragment) n=2 Tax=Nostocales TaxID=1161 RepID=A0A1D2PCU9_9CYAN)

HSP 1 Score: 51.6 bits (122), Expect = 1.830e-5
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    7 HETHGHFEDAEPLYQRSLAVREKVLGPEHPVVATTL 114
            ++  G+F+ AEPLYQRSLA+ EKVLG EHP VA +L
Sbjct:    1 YQAQGNFQQAEPLYQRSLAINEKVLGKEHPYVAQSL 36
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BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 3.160e-5
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   25 FEDAEPLYQRSLAVREKVLGPEHPVVATTLK-WVGL 129
            F+DAEPLY+RSLA+ EKV GP+HP VAT L  W  L
Sbjct:  118 FQDAEPLYERSLAIDEKVYGPDHPEVATDLNNWAAL 153
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig914.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
UPI0013D295285.110e-866.67tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
UPI0013D05A067.300e-766.67tetratricopeptide repeat-containing protein n=1 Ta... [more]
D7FWM6_ECTSI2.950e-669.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8Z8_9PHAE5.060e-671.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIY6_9PHAE5.170e-660.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
U9W4Q0_9CYAN9.240e-665.63Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyng... [more]
D7G722_ECTSI1.010e-571.88NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A3B8JJF2_9CYAN1.530e-561.11Tetratricopeptide repeat-containing protein (Fragm... [more]
A0A1D2PCU9_9CYAN1.830e-563.89CHAT domain-containing protein (Fragment) n=2 Tax=... [more]
A0A6H5LI51_9PHAE3.160e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig914contigD-mesarthrocarpus_Contig914:7605..8315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWM6
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size288
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.83e-07
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size288
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791069.0608516-CDS-D-mesarthrocarpus_Contig914:7604..76311680791069.0608516-CDS-D-mesarthrocarpus_Contig914:7604..7631Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig914 7605..7631 +
1680791069.0798109-CDS-D-mesarthrocarpus_Contig914:7998..81151680791069.0798109-CDS-D-mesarthrocarpus_Contig914:7998..8115Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig914 7999..8115 +
1680791069.0919895-CDS-D-mesarthrocarpus_Contig914:8171..83151680791069.0919895-CDS-D-mesarthrocarpus_Contig914:8171..8315Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig914 8172..8315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig914.3.1prot_D-mesarthrocarpus_Contig914.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig914 7605..8315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig914.3.1

>prot_D-mesarthrocarpus_Contig914.3.1 ID=prot_D-mesarthrocarpus_Contig914.3.1|Name=mRNA_D-mesarthrocarpus_Contig914.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=96bp
EFHETHGHFEDAEPLYQRSLAVREKVLGPEHPVVATTLKWVGLLGFLSEA
EPLYSGPIRIWEAVLGSGQVATGLNNRAGLVKRKVRTNAIFLETA*
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mRNA from alignment at D-mesarthrocarpus_Contig914:7605..8315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig914.3.1 ID=mRNA_D-mesarthrocarpus_Contig914.3.1|Name=mRNA_D-mesarthrocarpus_Contig914.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=711bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig914:7605..8315+ (Discosporangium mesarthrocarpum MT17_79)
GAATTCCATGAAACTCATGGACATTTTGTACATGAGGGTCACTCCATGAG
AAGGACAAAAGGAGAATAGCGTTATTCTATGCAAGACAAAGGTAGGAAAC
CAAATTGAAAGAAGACCAGCGTGTCAGGCTTGGCCTGGGGAGGGTTTATT
GGTGAGAGCCAGAGGTCAACCCTGATTCCTGCGCATACCCGACATGGAAC
GATGAAATAAAGAAGAAATGTTATTGTGACCCTTAAGCGCAGTTGGTTGA
CTATTGCAGGGAAATAACACACAAACCGATAAAGCTAGTTCATGCAGCCT
AGAGTGTTTAACCCTGATTGCCTAACATCAATCAGCACAGGGCTCAATTT
TGTGTACATTCACTCAGCATGTTGTGCTCACCCCGGGAAAGTAGGAAGAT
GCAGAACCCCTGTACCAGCGGTCCTTGGCAGTTAGGGAGAAGGTGCTTGG
CCCTGAACACCCAGTGGTTGCTACAACGCTGAAATGGGTGGGGTTATTGG
GCTTTCTTTCTGTTCTTACCCATAAGGCCGACCTCAAACTCATTCCTACT
CACAACGCAAATTTAAGGAAGCAGAGCCCTTGTACTCAGGTCCAATCAGA
ATATGGGAGGCAGTCCTGGGAAGTGGCCAAGTGGCTACAGGACTCAACAA
CCGGGCGGGGTTGGTTAAGAGAAAGGTGAGAACTAACGCAATATTCCTAG
AAACTGCATGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig914:7605..8315+

>mRNA_D-mesarthrocarpus_Contig914.3.1 ID=mRNA_D-mesarthrocarpus_Contig914.3.1|Name=mRNA_D-mesarthrocarpus_Contig914.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=288bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig914:7605..8315+ (Discosporangium mesarthrocarpum MT17_79)
GAATTCCATGAAACTCATGGACATTTTGAAGATGCAGAACCCCTGTACCA
GCGGTCCTTGGCAGTTAGGGAGAAGGTGCTTGGCCCTGAACACCCAGTGG
TTGCTACAACGCTGAAATGGGTGGGGTTATTGGGCTTTCTTTCTGAAGCA
GAGCCCTTGTACTCAGGTCCAATCAGAATATGGGAGGCAGTCCTGGGAAG
TGGCCAAGTGGCTACAGGACTCAACAACCGGGCGGGGTTGGTTAAGAGAA
AGGTGAGAACTAACGCAATATTCCTAGAAACTGCATGA
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