mRNA_D-mesarthrocarpus_Contig9136.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9136.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9136.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9136.1.1 vs. uniprot
Match: D7G589_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G589_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.270e-12
Identity = 70/195 (35.90%), Postives = 92/195 (47.18%), Query Frame = 1 
Query:    4 LAARVCARSPLKDSTIRARSRGLHFYKSIRAIDLLLVRAKAERKLLLSAATRGRDPSAIMRARQSLEV----GSLALPATRHHAINRAALQHLKRL-------SFAAKAMGNAIVG---------DAAAAAPRAAWPGARATLGRYEGVFRGLVALSFSEYAMVRAAAQDGVEELSVVFPGFLYGVIPELIGCLT 528
            L+ R+      K    R +S  +  +KS +   L     K    L + AA    + SA    R++LE     G  A P  R   + RA +QH KRL       +FAAK+  ++  G           +  A RA WP A A LGRY  +F  L+ LS SEYAMVRAAAQ GV  +  VFP F    +PELI  L+
Sbjct: 1002 LSQRIACTRGAKAHQARRQSSVIATFKSQQRDVLRDAARKMRFTLAVEAAAADGETSAASAGRRALEFEGTGGVQACP--RAMVVARANVQHWKRLGVAPRSLAFAAKSAASSSTGVPNEAENSSGGSGGAGRAPWPAASAALGRYRALFSSLMTLSSSEYAMVRAAAQVGVNNVGGVFPWFAREAVPELIKRLS 1194
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9136.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G589_ECTSI2.270e-1235.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9136contigD-mesarthrocarpus_Contig9136:307..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G589
Preferred nameBLM3
PFAMsBLM10_N,BLM10_mid,DUF3437
Model size533
Max annot lvl2759|Eukaryota
KEGG koko:K06699
KEGG Pathwayko03050,map03050
Hectar predicted targeting categorymitochondrion
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005839,GO:0006508,GO:0006807,GO:0006810,GO:0006913,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009987,GO:0010498,GO:0010499,GO:0010604,GO:0010952,GO:0016020,GO:0016021,GO:0016043,GO:0016504,GO:0019222,GO:0019538,GO:0022607,GO:0030162,GO:0030163,GO:0030234,GO:0031224,GO:0031323,GO:0031325,GO:0031329,GO:0031503,GO:0031597,GO:0032268,GO:0032270,GO:0032991,GO:0034515,GO:0034622,GO:0042176,GO:0042393,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044445,GO:0044464,GO:0044877,GO:0045862,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051235,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0052547,GO:0060255,GO:0061134,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070577,GO:0070628,GO:0071704,GO:0071840,GO:0080090,GO:0098544,GO:0098545,GO:0098772,GO:0140030,GO:0140033,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:1990236,GO:1990237
Exons1
Evalue3.72e-13
EggNOG OGsKOG1851@1|root,KOG1851@2759|Eukaryota
Descriptionacetylation-dependent protein binding
Cds size531
COG categoryE
BRITEko00000,ko00001,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791068.7200992-CDS-D-mesarthrocarpus_Contig9136:306..8371680791068.7200992-CDS-D-mesarthrocarpus_Contig9136:306..837Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9136 307..837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9136.1.1prot_D-mesarthrocarpus_Contig9136.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9136 307..837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9136.1.1

>prot_D-mesarthrocarpus_Contig9136.1.1 ID=prot_D-mesarthrocarpus_Contig9136.1.1|Name=mRNA_D-mesarthrocarpus_Contig9136.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=177bp
GLAARVCARSPLKDSTIRARSRGLHFYKSIRAIDLLLVRAKAERKLLLSA
ATRGRDPSAIMRARQSLEVGSLALPATRHHAINRAALQHLKRLSFAAKAM
GNAIVGDAAAAAPRAAWPGARATLGRYEGVFRGLVALSFSEYAMVRAAAQ
DGVEELSVVFPGFLYGVIPELIGCLTP
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9136:307..838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9136.1.1 ID=mRNA_D-mesarthrocarpus_Contig9136.1.1|Name=mRNA_D-mesarthrocarpus_Contig9136.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=532bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9136:307..838+ (Discosporangium mesarthrocarpum MT17_79)
GGGCTGGCGGCTCGGGTCTGTGCGCGGTCCCCTCTCAAGGACTCCACCAT
CCGTGCGAGGTCCCGGGGTCTCCACTTCTACAAGTCCATACGGGCCATTG
ACCTGTTGCTTGTCCGGGCCAAGGCCGAGCGAAAGCTCCTCCTCTCCGCC
GCCACCAGGGGGAGGGACCCTTCTGCCATCATGAGGGCTAGACAGAGCTT
AGAGGTTGGGAGCCTTGCCCTGCCAGCAACGCGTCACCACGCGATCAACC
GGGCGGCCCTCCAGCACCTCAAGCGCCTCTCCTTTGCTGCCAAGGCAATG
GGCAACGCAATCGTCGGCGATGCGGCTGCCGCGGCCCCGAGGGCCGCCTG
GCCTGGGGCCAGAGCCACCCTGGGGCGCTACGAGGGTGTTTTCAGGGGTC
TGGTGGCCCTCTCCTTCTCAGAGTACGCCATGGTGCGGGCGGCGGCTCAG
GACGGGGTAGAGGAGCTTAGCGTTGTCTTCCCTGGCTTCCTGTATGGTGT
GATCCCGGAGCTAATTGGCTGCCTTACCCCAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9136:307..838+

>mRNA_D-mesarthrocarpus_Contig9136.1.1 ID=mRNA_D-mesarthrocarpus_Contig9136.1.1|Name=mRNA_D-mesarthrocarpus_Contig9136.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=531bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9136:307..838+ (Discosporangium mesarthrocarpum MT17_79)
GGGCTGGCGGCTCGGGTCTGTGCGCGGTCCCCTCTCAAGGACTCCACCAT
CCGTGCGAGGTCCCGGGGTCTCCACTTCTACAAGTCCATACGGGCCATTG
ACCTGTTGCTTGTCCGGGCCAAGGCCGAGCGAAAGCTCCTCCTCTCCGCC
GCCACCAGGGGGAGGGACCCTTCTGCCATCATGAGGGCTAGACAGAGCTT
AGAGGTTGGGAGCCTTGCCCTGCCAGCAACGCGTCACCACGCGATCAACC
GGGCGGCCCTCCAGCACCTCAAGCGCCTCTCCTTTGCTGCCAAGGCAATG
GGCAACGCAATCGTCGGCGATGCGGCTGCCGCGGCCCCGAGGGCCGCCTG
GCCTGGGGCCAGAGCCACCCTGGGGCGCTACGAGGGTGTTTTCAGGGGTC
TGGTGGCCCTCTCCTTCTCAGAGTACGCCATGGTGCGGGCGGCGGCTCAG
GACGGGGTAGAGGAGCTTAGCGTTGTCTTCCCTGGCTTCCTGTATGGTGT
GATCCCGGAGCTAATTGGCTGCCTTACCCCA
back to top