mRNA_D-mesarthrocarpus_Contig9130.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9130.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9130.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9130.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9130contigD-mesarthrocarpus_Contig9130:2114..3940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size466
Hectar predicted targeting categoryother localisation
Exons3
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791068.187334-CDS-D-mesarthrocarpus_Contig9130:2113..23791680791068.187334-CDS-D-mesarthrocarpus_Contig9130:2113..2379Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9130 2114..2379 +
1680791068.2027745-CDS-D-mesarthrocarpus_Contig9130:2603..27131680791068.2027745-CDS-D-mesarthrocarpus_Contig9130:2603..2713Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9130 2604..2713 +
1680791068.2178175-CDS-D-mesarthrocarpus_Contig9130:3851..39401680791068.2178175-CDS-D-mesarthrocarpus_Contig9130:3851..3940Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9130 3852..3940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9130.1.1prot_D-mesarthrocarpus_Contig9130.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9130 2114..3940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9130.1.1

>prot_D-mesarthrocarpus_Contig9130.1.1 ID=prot_D-mesarthrocarpus_Contig9130.1.1|Name=mRNA_D-mesarthrocarpus_Contig9130.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=155bp
RRASWPTFDWEPRVQTEMSLKLDIGGGGKGRMLDLSEKGITSVGQVVAIL
ATLDESSASPTVAVELNLDGNELVDLAGVDEISGLHLLRVGYNRLVTLGH
LHEAPSNSLRLQELDVSGNALQHLVGVEACRSLSRLEASHNSLRNLPDLR
QLVG*
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mRNA from alignment at D-mesarthrocarpus_Contig9130:2114..3940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9130.1.1 ID=mRNA_D-mesarthrocarpus_Contig9130.1.1|Name=mRNA_D-mesarthrocarpus_Contig9130.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1827bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9130:2114..3940+ (Discosporangium mesarthrocarpum MT17_79)
CGGCGTGCATCTTGGCCAACTTTTGATTGGGAACCGCGGGTCCAGACAGA
GATGAGCTTGAAGTTGGATATAGGAGGAGGAGGGAAGGGAAGAATGCTAG
ATCTCTCAGAGAAGGGAATTACTTCGGTGGGTCAGGTGGTGGCCATCCTG
GCGACTCTCGATGAGTCGTCGGCCTCGCCCACGGTGGCAGTGGAGCTCAA
CCTCGATGGAAACGAGCTCGTTGACTTGGCAGGGGTTGACGAGATCAGCG
GGCTCCACTTACTGCGGTGAGGTAGACTCTCAAGACACGCTCCAGGGAGC
TACGCTTCATGGGGGATAATCAATTGAGTTTGAACCTTCACACCCGCACA
CAAAAATCCAACTTCTCATATATTCAGCAATGAGAACCTCATACGATATA
TTCCTTTTGGCTTCACCCACTCTGTGTGGATGTGAAACAGCTAATGTTCA
ATGCTTTCTGTGTCGTTCGGCTCGCCTGTTTCCCGACCAGCGTCGGATAC
AATCGATTGGTCACCCTGGGACACCTACACGAAGCTCCCTCCAACAGCTT
GCGACTGCAGGAATTGGACGTGTCAGGGAACGCACTCCAGCACCTTGTGG
GCGAGTATGCTTCCACGACCACACTGCTGGATTGTTAGGGAATTATTTTT
ATCAACTACCGAGTAAACACGGTTTCCGGATAGGATGCATGGGGATTCAC
GCGCAAGCTGAGAACAGTAAGTACTCCTGTGCTTGATGCAGTACTAGAAA
TATTTTGCGCCTTCTATTTTCAAACCTAAGGGAGATAGCATTGGCAGTGA
TCGGCCAGCAGTTGGCACAGGATGTAAATATATTAATACGTTTTAAAGCA
CGTGAAGAAGTCGCCCCACATCACCCGTCCCCCATCTCCCCACAGTTGGC
AGTTTTGCAAGCAGTGGAAAGTTCTGAACGAGTATTAGTTGGAGCCCTTC
GCGTGAATCATGTGCTTGAACTTTTTGTTCAAGTAGTGCGGAGTTGCTTG
CAGAGTAAAGGCAAGGGCTAGGGTTAAGCTCCAGTTCAGGGTAGAACAGG
TTGGGTAAAGCGTTGGCTGGACTGGCTGATGGGGCACAGTATGCTTAGGT
GTGAACGCTCCATGCAAATACATGCACGCCCATACATGGTACTTCCGTAC
AGTACACCATGTTGCTCACGTACGTCCATAGTACTTCAAGTACACATTTG
TTATGTATGTACATACAGAACTGTACATTATAGCCTATAGCTCATGATAT
CAAACTTTTTTTCGGGGGGGAAAGCACTGAAAACGCCCAGGTTAGCCAAG
GCGTTGGCCTGGGGTGGCATTGCACTTCATGCATGTGTGATAGGACATAC
AGGCGCGAATTGTTGCTCCCAAATGCACCTCTGCTGCACTGTACTTGCGC
TGAACAGTTTGGAGCAAGTATTCGCTGACTGCAAGCAGGCTTTCGAAGCA
AGGTTGAACAGCACTCCATGATATCAGGGCGGCACGCATCAGAGCCCACC
TGCGAAAAATTCTGCTGCTGGCCTCTCCTCTTGAATCTTGGGAGCACCTT
GCATGCATTTCTGTGCAACCACTAACCCTGACCCAAAGTCCTGACCCTCA
CCCTCACCCAAACTCCAGCCCACAGACCTCACGGTGTCCTGCCAGGTGCG
TGGCCTACCCCCCTGAAATCCTTACGCCCCAGCTAAAAAAAAAAATTTTG
GTGCTCTCTTGCTTCTTGGTGTTTGGTTGGTTTTGCAGGTGTGGAGGCGT
GCAGGTCACTGTCCAGGCTGGAAGCATCCCACAACAGCCTGCGAAACCTT
CCAGACCTCAGGCAGCTTGTCGGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9130:2114..3940+

>mRNA_D-mesarthrocarpus_Contig9130.1.1 ID=mRNA_D-mesarthrocarpus_Contig9130.1.1|Name=mRNA_D-mesarthrocarpus_Contig9130.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=465bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9130:2114..3940+ (Discosporangium mesarthrocarpum MT17_79)
CGGCGTGCATCTTGGCCAACTTTTGATTGGGAACCGCGGGTCCAGACAGA
GATGAGCTTGAAGTTGGATATAGGAGGAGGAGGGAAGGGAAGAATGCTAG
ATCTCTCAGAGAAGGGAATTACTTCGGTGGGTCAGGTGGTGGCCATCCTG
GCGACTCTCGATGAGTCGTCGGCCTCGCCCACGGTGGCAGTGGAGCTCAA
CCTCGATGGAAACGAGCTCGTTGACTTGGCAGGGGTTGACGAGATCAGCG
GGCTCCACTTACTGCGCGTCGGATACAATCGATTGGTCACCCTGGGACAC
CTACACGAAGCTCCCTCCAACAGCTTGCGACTGCAGGAATTGGACGTGTC
AGGGAACGCACTCCAGCACCTTGTGGGTGTGGAGGCGTGCAGGTCACTGT
CCAGGCTGGAAGCATCCCACAACAGCCTGCGAAACCTTCCAGACCTCAGG
CAGCTTGTCGGGTGA
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