mRNA_D-mesarthrocarpus_Contig9095.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9095.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9095.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9095.2.1 vs. uniprot
Match: D8LHY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY8_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 6.570e-19
Identity = 58/99 (58.59%), Postives = 69/99 (69.70%), Query Frame = 3 
Query:   12 GVSLSGSQ----RTLALRDFYPYWRSMLEAPEGGKVLPVPKEGGARTVFPVMFDDNIG--RPGGS-LGAHIVDVRDVSTGRAVPFEEAWGAGHLVRADP 287
            G++ SG +    R LALRDFYP+WR  LE+ E GKVLPV      + V+PVMFDDNIG  RP GS  GAHIVDVRD+ TGR VPF+ A    H+VRA+P
Sbjct:  451 GIAGSGERNNHGRCLALRDFYPFWRKNLESAEAGKVLPVDLSDSPK-VWPVMFDDNIGHWRPDGSGSGAHIVDVRDMVTGRPVPFDTALER-HIVRAEP 547
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BLAST of mRNA_D-mesarthrocarpus_Contig9095.2.1 vs. uniprot
Match: A0A6H5L7S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.320e-17
Identity = 57/99 (57.58%), Postives = 67/99 (67.68%), Query Frame = 3 
Query:   12 GVSLSGSQ----RTLALRDFYPYWRSMLEAPEGGKVLPVPKEGGARTVFPVMFDDNIG--RPGGS-LGAHIVDVRDVSTGRAVPFEEAWGAGHLVRADP 287
            G++ SG      R LALRDFYP+WR  LE+ E GKVLPV      + V+PVMFDDNIG  RP GS   AHIVDVRD+ TGR VPF+ A    H+VRA+P
Sbjct:  419 GIAGSGETTNHGRCLALRDFYPFWRKNLESAEAGKVLPVDLSDTPK-VWPVMFDDNIGHWRPDGSGSDAHIVDVRDMVTGRPVPFDMALER-HIVRAEP 515
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BLAST of mRNA_D-mesarthrocarpus_Contig9095.2.1 vs. uniprot
Match: A0A1W0A507_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A507_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.840e-5
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 3 
Query:   18 SLSGSQRTLALRDFYPYWRSMLEAPEGGKVLPVPKEGGARTVFPVMFDDNIGRPGGSLGAHIVDVRDVSTGRAVPFEEAWGAGHLVRADP 287
            +L   +R  ALRD++ +W    E  E GK+L V       T+F   FDD+I        AHIVDVRD +TG+ +PF +A    +L R +P
Sbjct:  291 TLIKDRRVSALRDYWEWWSGHAEHAEYGKLLLVTPSEVPSTIF---FDDHIEE----TDAHIVDVRDATTGKPIPFAQAKDV-YLKRVEP 372
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9095.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHY8_ECTSI6.570e-1958.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7S9_9PHAE2.320e-1757.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1W0A507_9STRA8.840e-538.89Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9095contigD-mesarthrocarpus_Contig9095:3040..3961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHY8
Model size922
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.76e-21
EggNOG OGs2CXG7@1|root,2RX7W@2759|Eukaryota
Cds size525
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791064.4181063-UTR-D-mesarthrocarpus_Contig9095:3039..30471680791064.4181063-UTR-D-mesarthrocarpus_Contig9095:3039..3047Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9095 3040..3047 +
1680791064.4411526-UTR-D-mesarthrocarpus_Contig9095:3572..39611680791064.4411526-UTR-D-mesarthrocarpus_Contig9095:3572..3961Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9095 3573..3961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791064.430767-CDS-D-mesarthrocarpus_Contig9095:3047..35721680791064.430767-CDS-D-mesarthrocarpus_Contig9095:3047..3572Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9095 3048..3572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9095.2.1prot_D-mesarthrocarpus_Contig9095.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9095 3048..3572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9095.2.1

>prot_D-mesarthrocarpus_Contig9095.2.1 ID=prot_D-mesarthrocarpus_Contig9095.2.1|Name=mRNA_D-mesarthrocarpus_Contig9095.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=175bp
MGVSLSGSQRTLALRDFYPYWRSMLEAPEGGKVLPVPKEGGARTVFPVMF
DDNIGRPGGSLGAHIVDVRDVSTGRAVPFEEAWGAGHLVRADPLPTLVPS
RLPAPVIAPGKDCLVDDSSPFAGTGSDGSEGVCWVEQPVAGRSVRTRGEI
VTGGEERREGVNFFLFELLKRLVF*
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mRNA from alignment at D-mesarthrocarpus_Contig9095:3040..3961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9095.2.1 ID=mRNA_D-mesarthrocarpus_Contig9095.2.1|Name=mRNA_D-mesarthrocarpus_Contig9095.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=922bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9095:3040..3961+ (Discosporangium mesarthrocarpum MT17_79)
GGCGGGGAATGGGGGTGTCTCTCAGTGGATCCCAGAGAACCCTTGCGCTG
AGGGATTTCTACCCCTATTGGAGGTCGATGCTCGAGGCCCCAGAGGGAGG
GAAGGTCTTGCCGGTGCCCAAGGAGGGTGGTGCTCGCACAGTGTTCCCTG
TCATGTTTGATGATAACATTGGGAGGCCAGGGGGGTCTCTTGGGGCGCAC
ATTGTGGATGTGAGAGACGTATCCACAGGGAGAGCTGTGCCTTTTGAGGA
AGCCTGGGGTGCAGGGCATCTCGTACGGGCCGACCCACTCCCCACCTTGG
TCCCCAGCAGGCTCCCTGCCCCTGTCATTGCCCCTGGAAAGGATTGCTTG
GTTGATGACAGTAGTCCATTTGCTGGGACTGGGAGTGATGGGAGTGAGGG
GGTGTGTTGGGTAGAGCAGCCTGTTGCTGGAAGATCTGTGAGGACAAGAG
GGGAGATTGTAACAGGCGGGGAAGAGCGCAGAGAAGGAGTCAACTTCTTT
CTCTTTGAGTTACTGAAGCGGTTGGTGTTTTAGGTGGGAGATGAAGGGGG
TTTACTGGACCAAAGCTATGAAACTCCCTGAAACTTGTTGGGCATGATGC
TTTTACTCGGCCAACACAGAGGATGTAAGGATGCGCCGTAACTGGCATTG
GCCTTCATCTCGTGGAGACAACCCTATGGCTAACTATGCACAAGAAAGGT
CCTGGGTGAGTTTGGCAACAATCGACCCATTCTGATAGTGTTTTTAGGCC
TCCGTGATCAATGTGTGCTCCTCTGCATATCAATATACCCTGCTGATATG
AAAGATGAGCATTGCTTTTGTTTGCACAAAAGGAAACCTTTCTTAACCAT
TACCCCGACTTCAGACCATATGGAGTAGTTTGTATGTAGTATTGCTGTAG
GGAGCAGTAGCTTGATTGTCAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9095:3040..3961+

>mRNA_D-mesarthrocarpus_Contig9095.2.1 ID=mRNA_D-mesarthrocarpus_Contig9095.2.1|Name=mRNA_D-mesarthrocarpus_Contig9095.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=525bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9095:3040..3961+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGGGTGTCTCTCAGTGGATCCCAGAGAACCCTTGCGCTGAGGGATTT
CTACCCCTATTGGAGGTCGATGCTCGAGGCCCCAGAGGGAGGGAAGGTCT
TGCCGGTGCCCAAGGAGGGTGGTGCTCGCACAGTGTTCCCTGTCATGTTT
GATGATAACATTGGGAGGCCAGGGGGGTCTCTTGGGGCGCACATTGTGGA
TGTGAGAGACGTATCCACAGGGAGAGCTGTGCCTTTTGAGGAAGCCTGGG
GTGCAGGGCATCTCGTACGGGCCGACCCACTCCCCACCTTGGTCCCCAGC
AGGCTCCCTGCCCCTGTCATTGCCCCTGGAAAGGATTGCTTGGTTGATGA
CAGTAGTCCATTTGCTGGGACTGGGAGTGATGGGAGTGAGGGGGTGTGTT
GGGTAGAGCAGCCTGTTGCTGGAAGATCTGTGAGGACAAGAGGGGAGATT
GTAACAGGCGGGGAAGAGCGCAGAGAAGGAGTCAACTTCTTTCTCTTTGA
GTTACTGAAGCGGTTGGTGTTTTAG
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