|
|
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9079.2.1 vs. uniprot
Match: D8LCY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCY0_ECTSI) HSP 1 Score: 369 bits (946), Expect = 3.240e-110 Identity = 269/697 (38.59%), Postives = 363/697 (52.08%), Query Frame = 2
Query: 179 MLEGTVLQESR----GKGDTVVGISWHCGHHTKYNPSLVVTCVHQVIVFKPEESRRTHQWSFKPSASTALSHAAVFQPACAYYVAVRRGVTLVSWREADQSIEKPISAKAPGSVQAIHPCPRLGDALAVVMESGTVALFTCGLREI--CRAAGPPPSAGG-----QEGRGLRQVVWSGVVGHTLAVIEEEDGGGGERINLFALTPPQSDSAGGKTQPS-----------NTP-TVTLSASHPLEKPPLRAAGD-------ATAATRGGDDSATPXXXXXXXXXXXXXXXXXXXXXXXXXALAISVGWRTPRGPVWTKFHLSSTGGARLEFAKRVGLPLQPPSRQSSEDELAVTAAVAQDHAAAGSAPPNADDHGRGGSRSDVILSMGPR-SQVLFLCRRQGGRGGKHGGSA-PPPPLVSVWDATYGVLLEEGPAPAHRRGGWGSLAAQSESPPWQGMQVSWGGSYVAFAGAGGVIASPLPTREGAGTLASILRRKHGRGQGQGLAGRLSTATAEAGPGEEGKVDLSRWNTGAMRLLEKTGPVDAREWEPMVGVSW-DAEARTVETLRRAALRGDAEGFAAAMEEHCLSQQQXXXXXXXXXXXXXXXXXXXXXXXGCYSTSVVAEAVELCLLYPKAGLWGVFESLVNSRGVSARHHHGMISTLLKHAPPQLLEQVLVNVPDLPETDAVRILQHFLAKA 2170
MLE TVL +SR G+ + VVGI+W + +PSLVVTC HQV+V+KP E RRTHQWSFKPSA+T LSH AVF P+ + YV V++G TLVSWRE++Q ++ P+S++A G +QA+H CPRLGD V+ SG V L+ GL+ C A G + VWSGV+G + V+E G +R+ F+L SAGG S + P +VTL +SH L KP +AA G D + ISV WRT GPVWTK + + GG EFA+ G + SR+++E +V+ + G P A G++S V G + V + GGR H GS P ++VWD++YGVLLE+G AP G G +A S G++VS G+++A A AG V+ PLP + AGTLAS+LRRK G + + + P +DLSR + A LL KTG V+A +WE V V + +AEA + +LR AA R D F EH L + G +S++VVA AVELCL P A LWG LV S GVSARHH G+++ +++HA P+LLE+V+++VPDLPE DAVRIL+HFL++A
Sbjct: 1 MLESTVLHQSRTGPRGQPNDVVGINWKAPTRSHPSPSLVVTCAHQVVVYKPGEERRTHQWSFKPSAATVLSHPAVFLPSRSRYVGVQQGSTLVSWRESEQDVKHPLSSQAAGPIQAVHACPRLGDYFVAVLASGGVVLYQGGLQRAAHCDAXXXXXXXXXXXXXXSAGDARAKAVWSGVLGDRVLVLENT-GAATDRVTTFSL------SAGGVGSSSVRRDDACAAAADVPASVTLVSSHILTKPXXXXXXXXXXXXXXTSAAFLGRDSGGS-----------------------GEGRSVISVAWRTSSGPVWTKAVVGA-GGVTEEFARHAGGEVVAGSRRATEHNGNGVVSVSSSN---GHGTPKAKSKKPAGNQSSVGEGSGAAWACVPAIAAADGGRLLIHSGSGGDASPRLAVWDSSYGVLLEDGVAPEFSSDGGGGGSASRSSGRAVGLKVSGDGAHLAIAAAGKVLVCPLPA-QAAGTLASLLRRKRPSPSAIGGSTVIPAGRGSSFP----SIDLSR-SVPASTLLGKTGAVEAGKWEAAVVVPFREAEAGVIRSLREAARRKDIGAF-----EHVLREHLGAGSRSSDGRGEDGRKKRQRGDGGGFSSAVVASAVELCLANPDAKLWGGLGVLVRSGGVSARHHRGLVAEIVEHASPELLEEVMLHVPDLPEVDAVRILRHFLSQA 652
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Seed ortholog | 36331.EPrPI00000015807 |
| Model size | 2326 |
| Max annot lvl | 121069|Pythiales |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Evalue | 0.000183 |
| EggNOG OGs | 2C3YG@1|root,2R7JC@2759|Eukaryota,1MBF9@121069|Pythiales |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_001470.1 |
| Description | function. Source PGD |
| Cds size | 2148 |
| COG category | S |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791062.654491-UTR-D-mesarthrocarpus_Contig9079:1428..1606 | 1680791062.654491-UTR-D-mesarthrocarpus_Contig9079:1428..1606 | Discosporangium mesarthrocarpum MT17_79 | UTR | D-mesarthrocarpus_Contig9079 1429..1606 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791062.6728-CDS-D-mesarthrocarpus_Contig9079:1606..1744 | 1680791062.6728-CDS-D-mesarthrocarpus_Contig9079:1606..1744 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig9079 1607..1744 + |
| 1680791062.6836793-CDS-D-mesarthrocarpus_Contig9079:1964..2141 | 1680791062.6836793-CDS-D-mesarthrocarpus_Contig9079:1964..2141 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig9079 1965..2141 + |
| 1680791062.6991189-CDS-D-mesarthrocarpus_Contig9079:2500..3121 | 1680791062.6991189-CDS-D-mesarthrocarpus_Contig9079:2500..3121 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig9079 2501..3121 + |
| 1680791062.7144883-CDS-D-mesarthrocarpus_Contig9079:3220..3755 | 1680791062.7144883-CDS-D-mesarthrocarpus_Contig9079:3220..3755 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig9079 3221..3755 + |
| 1680791062.7296205-CDS-D-mesarthrocarpus_Contig9079:3833..4069 | 1680791062.7296205-CDS-D-mesarthrocarpus_Contig9079:3833..4069 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig9079 3834..4069 + |
| 1680791062.743375-CDS-D-mesarthrocarpus_Contig9079:4103..4316 | 1680791062.743375-CDS-D-mesarthrocarpus_Contig9079:4103..4316 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig9079 4104..4316 + |
| 1680791062.7578473-CDS-D-mesarthrocarpus_Contig9079:4912..5140 | 1680791062.7578473-CDS-D-mesarthrocarpus_Contig9079:4912..5140 | Discosporangium mesarthrocarpum MT17_79 | CDS | D-mesarthrocarpus_Contig9079 4913..5140 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9079.2.1 >prot_D-mesarthrocarpus_Contig9079.2.1 ID=prot_D-mesarthrocarpus_Contig9079.2.1|Name=mRNA_D-mesarthrocarpus_Contig9079.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=716bp
MLEGTVLQESRGKGDTVVGISWHCGHHTKYNPSLVVTCVHQVIVFKPEES RRTHQWSFKPSASTALSHAAVFQPACAYYVAVRRGVTLVSWREADQSIEK PISAKAPGSVQAIHPCPRLGDALAVVMESGTVALFTCGLREICRAAGPPP SAGGQEGRGLRQVVWSGVVGHTLAVIEEEDGGGGERINLFALTPPQSDSA GGKTQPSNTPTVTLSASHPLEKPPLRAAGDATAATRGGDDSATPDNSARA CSATLHSSSNNAASWGGGGALAISVGWRTPRGPVWTKFHLSSTGGARLEF AKRVGLPLQPPSRQSSEDELAVTAAVAQDHAAAGSAPPNADDHGRGGSRS DVILSMGPRSQVLFLCRRQGGRGGKHGGSAPPPPLVSVWDATYGVLLEEG PAPAHRRGGWGSLAAQSESPPWQGMQVSWGGSYVAFAGAGGVIASPLPTR EGAGTLASILRRKHGRGQGQGLAGRLSTATAEAGPGEEGKVDLSRWNTGA MRLLEKTGPVDAREWEPMVGVSWDAEARTVETLRRAALRGDAEGFAAAME EHCLSQQQQQHRDRGEGGGPRGGWGEGGGGSGCYSTSVVAEAVELCLLYP KAGLWGVFESLVNSRGVSARHHHGMISTLLKHAPPQLLEQVLVNVPDLPE TDAVRILQHFLAKATAPLASLASPSPPGATTAALEGSAKMAFQKGLVRGG GGGGGGTPTPTGGGVG back to topmRNA from alignment at D-mesarthrocarpus_Contig9079:1429..5140+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-mesarthrocarpus_Contig9079.2.1 ID=mRNA_D-mesarthrocarpus_Contig9079.2.1|Name=mRNA_D-mesarthrocarpus_Contig9079.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3712bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9079:1429..5140+ (Discosporangium mesarthrocarpum MT17_79) CACAATTTTGGGTTGTGCAGGCGACTTAAGCCAGCTCCTGCCCCTCCCTT
GTGGACGGCAGGCTGGTCAGTCATCTATTGGATTGCTTCGATAGCTGGGG
GGTATTGATCTCTTTAATTGGGTGCGGGGAAAGGACGAGCAAGAAATAAA
AGACGGGCAGCCTACTTGAGGCCTTACAATGCTCGAAGGCACCGTGCTGC
AGGAGAGCCGTGGCAAGGGAGATACTGTGGTGGGGATATCATGGCATTGT
GGACATCATACGAAGTATAATCCTTCTTTGGTAGTGACGTGCGTCCACCA
AGTTATTGTGTTTAAGGTGAGCCAGGGACTACATCAAGTGCCAGGGGAAT
GGTACAACAATCCTAGAGTGTTGCGATATCATGTGGCCTTTGAATTCGAC
AATCCTGGCATAATCAAAGTTGAAACATTCTCAGATTATTGAAAGGGTCT
TACCTACCGCTGGTAATGCCTCTTTCTTGACCTTTATCCCGTCATGCCAA
ATCACATTTCCTCCCGACACCGGTGGACTGGGTTAGCCTGAGGAGTCAAG
GAGAACGCACCAATGGTCGTTCAAACCATCGGCATCGACGGCTCTCTCCC
ACGCCGCTGTCTTCCAACCCGCCTGTGCGTACTACGTGGCTGTGCGGCGG
GGGGTGACCCTAGTGTCTTGGCGGGAGGCTGACCAGAGTATCGAGAAACC
AATCTCTGCCAAGGTGAGTAACCACGAGGGTAAATCACAGCTCAGCCTTT
TAGAGCACGGTTATAGGCTGAAGTGTGATCGCAGGACCTACTCCTGTATG
TGGTAATTCTCCTGGCACTTTTAAAGGCATTTGATATTCTCGATCGCTTG
TACAACATAGATAATCGAGTTGATCGACTCCATGCACTTTGTTAGCCAAA
TCCACTTTTCACTGGGTCATGTATATCTTGAGTAAATTTTCACTGGGTAG
ACAATGTCTACGCCGAGCCCGACCCAGGGATAGTGCCGTAGGCACTGTAG
TCACTGCATGTAAGTCTACCACCCCCACCTCAGGCCCCCGAACGTCACAT
TCTCCGTCGGAACTCTCCTCAGGCCCCGGGAAGCGTGCAGGCCATCCACC
CTTGCCCCCGCCTCGGCGATGCCCTGGCGGTGGTGATGGAATCGGGGACC
GTAGCCCTCTTCACATGCGGGCTAAGGGAGATATGCAGAGCAGCCGGCCC
GCCCCCCTCGGCTGGTGGTCAGGAGGGGCGCGGGTTGCGACAGGTCGTGT
GGTCGGGCGTTGTCGGGCACACCCTAGCCGTTATTGAGGAGGAGGATGGC
GGGGGAGGGGAGCGCATCAACCTCTTCGCCCTCACGCCACCTCAATCAGA
CTCTGCAGGGGGGAAAACACAACCCTCGAACACCCCCACTGTCACCCTCT
CCGCTTCCCACCCCCTCGAAAAGCCTCCCTTGCGAGCGGCGGGCGATGCC
ACGGCTGCTACCAGAGGGGGAGACGACTCGGCCACACCAGACAACTCCGC
CCGCGCCTGCTCCGCCACTCTTCACAGCAGCAGTAACAATGCTGCATCAT
GGGGGGGGGGAGGGGCACTGGCGATTTCCGTGGGCTGGAGGACCCCGCGG
GGCCCAGTTTGGACAAAGTTCCACCTCTCGAGCACAGGAGGGGCCCGGCT
GGAGTTTGCAAAAAGGGTAGGCCTTCCCCTGCAGCCGCCGTCCGTCACCG
CCGGTGCCACACCCGCATCGCATTGCAGCAGCGGCGGCAGCAGTTCTGCA
AAGAAGCCCAAGCGGGGCAGGGAAACCAAGGTGTACCAGCAGCGGCAGTC
CTCCGAAGATGAGCTGGCAGTTACTGCTGCTGTTGCCCAAGACCATGCTG
CTGCTGGTTCTGCTCCCCCTAACGCCGATGACCACGGGAGAGGGGGCAGT
CGATCGGATGTTATCCTGTCGATGGGACCCCGTTCCCAGGTCCTTTTCCT
CTGCAGACGACAGGGGGGCAGAGGGGGCAAACACGGCGGGTCCGCCCCCC
CCCCGCCCCTGGTGTCAGTGTGGGATGCCACATACGGTGTCTTGCTGGAA
GAAGGCCCAGCCCCAGCCCACAGACGTGGGGGGTGGGGCTCCCTGGCTGC
ACAGTCGGAGTCCCCCCCCTGGCAGGGCATGCAGGTGTCTTGGGGGGGGA
GTTATGTCGCCTTCGCCGGGGCTGGGGGGGTCATCGCAAGTCCCCTGCCG
ACCCGTGAGGGCGCTGGCACACTTGCCTCTATCCTCCGCCGCAAGCACGG
GAGGGGGCAGGGGCAGGGGTTGGCGGGCAGGCTATCAACAGCAACAGCAG
AAGCAGGACCCGGGGAGGAGGGGAAGGGTGCTGGGGGCGGCCCAGCTCGG
CTTGGGCTGGGTGAGGCGGGAGTTCTGGGGGCCCCGGTGGCATGGTCCCC
CACAGTGGACCTTAGCCGATGGAATACGGGGGCAATGCGGCTGCTGGAGA
AGACAGGGCCCGTGGATGCAAGAGAGTGGGAGCCAATGGTGGGGGTGTCC
TGGGATGCAGAGGCACGGACCGTGGAGACTCTCCGCCGGGCAGCCCTCCG
TGGGGATGCAGAGGGGTTTGCGGCTGCGATGGAGGAGCATTGCTTGTCGC
AGCAGCAGCAGCAGCACCGGGACCGGGGGGAAGGGGGGGGGGTGAAAGGA
CTGTCATGGCGGGGAGGAAGCGCAGCCGCGAGGGGGGTGGGGGGAGGGGG
GGGGGGGCAGCGGCTGCTACTCGACCTCAGTAGTTGCTGAGGCAGTGGAA
CTGTGTCTGCTGTACCCAAAGGCTGGTCTGTGGGGTGTGTTCGAGAGCCT
GGTGAACTCCCGGGGTGTTTCTGCAAGGCACCACCACGGAATGATCTCTA
CACTGCTCAAGCATGCGCCCCCCCAGCTGCTGGAGCAGGTGAAGTGCAGA
TGGGGGGGAAGGGGGGGGTTAGCAGCCGGGGCTGGGAGAGGGTTGGGATT
AGGCTTTGGTATAGTGTTAAATTATAAATCCCTTCCTTTCTGTCGGCTTT
TTGTGAGGAAAAGAGTGGGGACAGAAACGCCTTCTCTCATTCTGGCAGCA
TAGCGTTGTGAGGAGTGTATGGTGTCACATGTGCTTCCATTTGCTACTCC
AGTACCGTAGGTGCTTTGAGGATATTGACTTATATGCATGCATGCCCAAA
ACCCACTCGAGCCTTCTTTATTTCTTTGAGAGCATTTCTCAGTAACGCAG
CCCTCTTTGTCAACCGGAGCCTCTTCATGACAGAGCATTGAAGTCGCCCT
TTCTTTTTCCCAGCCTCTAACCTGTTTGCCCCTCACAGTCCCTGATGACC
CCATCACGCACCCACGCTCTCTCTGTCTCTCTCACCTGCCGAATTGTTGT
GATCTCACCCCGCAACATGGCCTGTCCAACACTTATGCCCTAACCTTTAA
GAGAAAACATAATTTCTCTTACCCCCAACATGATTACAACCACGTAAATC
AACTAAAATCAACTACCACCCACAACATTGAAAGGTGCTGGTGAATGTCC
CAGATCTTCCCGAGACTGATGCTGTCCGCATACTCCAGCACTTTCTTGCC
AAAGCCACGGCCCCCTTAGCCTCCTTGGCATCACCGTCACCGCCAGGCGC
TACTACTGCTGCATTGGAGGGGTCTGCCAAGATGGCTTTCCAGAAGGGCC
TCGTGAGGGGAGGGGGGGGGGGGGGGGGGGGCACCCCAACCCCCACCGGG
GGGGGGGTGGGG back to topCoding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9079:1429..5140+ >mRNA_D-mesarthrocarpus_Contig9079.2.1 ID=mRNA_D-mesarthrocarpus_Contig9079.2.1|Name=mRNA_D-mesarthrocarpus_Contig9079.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=2148bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9079:1429..5140+ (Discosporangium mesarthrocarpum MT17_79) ATGCTCGAAGGCACCGTGCTGCAGGAGAGCCGTGGCAAGGGAGATACTGT GGTGGGGATATCATGGCATTGTGGACATCATACGAAGTATAATCCTTCTT TGGTAGTGACGTGCGTCCACCAAGTTATTGTGTTTAAGCCTGAGGAGTCA AGGAGAACGCACCAATGGTCGTTCAAACCATCGGCATCGACGGCTCTCTC CCACGCCGCTGTCTTCCAACCCGCCTGTGCGTACTACGTGGCTGTGCGGC GGGGGGTGACCCTAGTGTCTTGGCGGGAGGCTGACCAGAGTATCGAGAAA CCAATCTCTGCCAAGGCCCCGGGAAGCGTGCAGGCCATCCACCCTTGCCC CCGCCTCGGCGATGCCCTGGCGGTGGTGATGGAATCGGGGACCGTAGCCC TCTTCACATGCGGGCTAAGGGAGATATGCAGAGCAGCCGGCCCGCCCCCC TCGGCTGGTGGTCAGGAGGGGCGCGGGTTGCGACAGGTCGTGTGGTCGGG CGTTGTCGGGCACACCCTAGCCGTTATTGAGGAGGAGGATGGCGGGGGAG GGGAGCGCATCAACCTCTTCGCCCTCACGCCACCTCAATCAGACTCTGCA GGGGGGAAAACACAACCCTCGAACACCCCCACTGTCACCCTCTCCGCTTC CCACCCCCTCGAAAAGCCTCCCTTGCGAGCGGCGGGCGATGCCACGGCTG CTACCAGAGGGGGAGACGACTCGGCCACACCAGACAACTCCGCCCGCGCC TGCTCCGCCACTCTTCACAGCAGCAGTAACAATGCTGCATCATGGGGGGG GGGAGGGGCACTGGCGATTTCCGTGGGCTGGAGGACCCCGCGGGGCCCAG TTTGGACAAAGTTCCACCTCTCGAGCACAGGAGGGGCCCGGCTGGAGTTT GCAAAAAGGGTAGGCCTTCCCCTGCAGCCGCCGTCCCGGCAGTCCTCCGA AGATGAGCTGGCAGTTACTGCTGCTGTTGCCCAAGACCATGCTGCTGCTG GTTCTGCTCCCCCTAACGCCGATGACCACGGGAGAGGGGGCAGTCGATCG GATGTTATCCTGTCGATGGGACCCCGTTCCCAGGTCCTTTTCCTCTGCAG ACGACAGGGGGGCAGAGGGGGCAAACACGGCGGGTCCGCCCCCCCCCCGC CCCTGGTGTCAGTGTGGGATGCCACATACGGTGTCTTGCTGGAAGAAGGC CCAGCCCCAGCCCACAGACGTGGGGGGTGGGGCTCCCTGGCTGCACAGTC GGAGTCCCCCCCCTGGCAGGGCATGCAGGTGTCTTGGGGGGGGAGTTATG TCGCCTTCGCCGGGGCTGGGGGGGTCATCGCAAGTCCCCTGCCGACCCGT GAGGGCGCTGGCACACTTGCCTCTATCCTCCGCCGCAAGCACGGGAGGGG GCAGGGGCAGGGGTTGGCGGGCAGGCTATCAACAGCAACAGCAGAAGCAG GACCCGGGGAGGAGGGGAAGGTGGACCTTAGCCGATGGAATACGGGGGCA ATGCGGCTGCTGGAGAAGACAGGGCCCGTGGATGCAAGAGAGTGGGAGCC AATGGTGGGGGTGTCCTGGGATGCAGAGGCACGGACCGTGGAGACTCTCC GCCGGGCAGCCCTCCGTGGGGATGCAGAGGGGTTTGCGGCTGCGATGGAG GAGCATTGCTTGTCGCAGCAGCAGCAGCAGCACCGGGACCGGGGGGAAGG GGGGGGGCCGCGAGGGGGGTGGGGGGAGGGGGGGGGGGGCAGCGGCTGCT ACTCGACCTCAGTAGTTGCTGAGGCAGTGGAACTGTGTCTGCTGTACCCA AAGGCTGGTCTGTGGGGTGTGTTCGAGAGCCTGGTGAACTCCCGGGGTGT TTCTGCAAGGCACCACCACGGAATGATCTCTACACTGCTCAAGCATGCGC CCCCCCAGCTGCTGGAGCAGGTGCTGGTGAATGTCCCAGATCTTCCCGAG ACTGATGCTGTCCGCATACTCCAGCACTTTCTTGCCAAAGCCACGGCCCC CTTAGCCTCCTTGGCATCACCGTCACCGCCAGGCGCTACTACTGCTGCAT TGGAGGGGTCTGCCAAGATGGCTTTCCAGAAGGGCCTCGTGAGGGGAGGG GGGGGGGGGGGGGGGGGCACCCCAACCCCCACCGGGGGGGGGGTGGGG back to top
|