mRNA_D-mesarthrocarpus_Contig90.19.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig90.19.2
Unique NamemRNA_D-mesarthrocarpus_Contig90.19.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig90.19.2 vs. uniprot
Match: A0A6H5K4K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K0_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.740e-40
Identity = 105/249 (42.17%), Postives = 137/249 (55.02%), Query Frame = 3 
Query:   66 SGFSHGFRPIDGEAPPPTPSE---------LERGG-----------PYSLTGGVSQKDFRPDSADFASSTRKRRRFPGPLAFHHLGSGAGSGAYAWGRSLHQQSDPGSFRYPSRSDLDSEGSDGEGGEEALEQGGGEIAGGHFSKGPWLKLCDALDVPLPREGATNVEALQVFVKESPSPIAGVLAGQFDLRVPTVTAVIDSVSKPSETDLVAILVDPSGRMEGYFHPQSLHDHGAELTAGAALVLQDV 752
            +GF+HGFRP++G+ PP TP++         ++  G           P    GG     F P        +RKRRR PGPLAF  L  GAGS          QQ               S  SD           GGE  GGHF+KGPWL LC A+D P+  EGA++ +A+Q F++ + SP++ VLAG FDLRVP VTAVIDS +K S +D+V  LVDPSGR++G+ HP  L +HG  L  GAAL+L++V
Sbjct:    9 TGFAHGFRPLEGDHPPATPTQRNATAASQSVQHAGSFLSAMSQPPTPAGAHGGAVGMGFGP--------SRKRRRLPGPLAF--LQHGAGSAG--------QQDGXXXXXXXXXXXXXSNDSD---------PNGGEAGGGHFTKGPWLSLCSAIDAPIAEEGASDSKAVQAFLRGAVSPMSEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEV 230
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BLAST of mRNA_D-mesarthrocarpus_Contig90.19.2 vs. uniprot
Match: D8LFD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD2_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 7.510e-34
Identity = 65/114 (57.02%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  411 GEIAGGHFSKGPWLKLCDALDVPLPREGATNVEALQVFVKESPSPIAGVLAGQFDLRVPTVTAVIDSVSKPSETDLVAILVDPSGRMEGYFHPQSLHDHGAELTAGAALVLQDV 752
            GE  GGHF+KGPWL LC A+D P+  EGA+  +A+Q F++ + SP+  VLAG FDLRVP VTAVIDS +K S +D+V  LVDPSGR++G+ HP  L +HG  L  GAAL+L++V
Sbjct:   43 GEAGGGHFTKGPWLSLCSAIDAPIAEEGASGSKAVQAFLRGAVSPMLEVLAGDFDLRVPVVTAVIDSYTKLSISDVVVELVDPSGRIKGHLHPGCLEEHGPSLGPGAALLLKEV 156
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BLAST of mRNA_D-mesarthrocarpus_Contig90.19.2 vs. uniprot
Match: G4ZJ80_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJ80_PHYSP)

HSP 1 Score: 57.0 bits (136), Expect = 3.570e-5
Identity = 37/118 (31.36%), Postives = 60/118 (50.85%), Query Frame = 3 
Query:  432 FSKGPWLKLCDALDVPLPRE---GATNVEALQVFVK---ESPSPIAGVLAGQFDLRVPTVTAVIDSVSKPSETDLVAILVDPSGRMEGYFHPQSLHDHGAELTAGAALVLQDVGSLSP 767
            F +GPW+++C  L +P       G+  +  L+  V+   E    +A         +VP + A+I SV    E ++VA+L DP+G +EGYFH + +   G  L AG  ++L  V   +P
Sbjct:   45 FDQGPWVEMCQYLGMPAVSGTLYGSIKIRNLKCTVQNIVEDDEALA---------KVPQLLALIKSVRYVDE-EIVAVLHDPTGEVEGYFHRELVEQLGPALVAGVGVLLYKVSVFTP 152
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BLAST of mRNA_D-mesarthrocarpus_Contig90.19.2 vs. uniprot
Match: A0A6A3ITA1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ITA1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.270e-5
Identity = 37/127 (29.13%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  432 FSKGPWLKLCDALDVPLPRE---GATNVEALQVFVK---ESPSPIAGVLAGQFDLRVPTVTAVIDSVSKPSETDLVAILVDPSGRMEGYFHPQSLHDHGAELTAGAALVLQDVGSLSPILYPTLTLR 794
            F +GPW+++C  L +P       G+  + +L+  V+   E    +A         +VP +  ++ SV    E ++VA+L DP+G +EGYFH + +   G  L AG  ++L  V   +P   P    R
Sbjct:  132 FDQGPWVEMCQYLGMPAVSGTLYGSIKIRSLKCTVQNIVEDDEALA---------KVPQLLVLVKSVRYVDE-EIVAVLHDPTGEVEGYFHRELVEQLGPALVAGVGVLLYKVSVFTPTDAPVTGRR 248
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig90.19.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4K0_9PHAE1.740e-4042.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFD2_ECTSI7.510e-3457.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G4ZJ80_PHYSP3.570e-531.36Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3ITA1_9STRA7.270e-529.13Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig90contigD-mesarthrocarpus_Contig90:37701..40611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo130379
PFAMsDUF4539
Model size1487
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.62e-06
EggNOG OGs28NJS@1|root,2QV5E@2759|Eukaryota,3QFB5@4776|Peronosporales
Ec32 ortholog descriptionProtein of unknown function DUF4539
Ec32 orthologEc-07_005850.1
DescriptionDomain of unknown function (DUF4539)
Cds size798
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig90.19.2prot_D-mesarthrocarpus_Contig90.19.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig90 37763..39915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791055.6556861-UTR-D-mesarthrocarpus_Contig90:37700..377621680791055.6556861-UTR-D-mesarthrocarpus_Contig90:37700..37762Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig90 37701..37762 +
1680791055.73043-UTR-D-mesarthrocarpus_Contig90:39915..401851680791055.73043-UTR-D-mesarthrocarpus_Contig90:39915..40185Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig90 39916..40185 +
1680791055.7445676-UTR-D-mesarthrocarpus_Contig90:40254..406111680791055.7445676-UTR-D-mesarthrocarpus_Contig90:40254..40611Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig90 40255..40611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791055.670035-CDS-D-mesarthrocarpus_Contig90:37762..380281680791055.670035-CDS-D-mesarthrocarpus_Contig90:37762..38028Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig90 37763..38028 +
1680791055.68549-CDS-D-mesarthrocarpus_Contig90:38176..383581680791055.68549-CDS-D-mesarthrocarpus_Contig90:38176..38358Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig90 38177..38358 +
1680791055.703523-CDS-D-mesarthrocarpus_Contig90:38716..388591680791055.703523-CDS-D-mesarthrocarpus_Contig90:38716..38859Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig90 38717..38859 +
1680791055.7170873-CDS-D-mesarthrocarpus_Contig90:39708..399151680791055.7170873-CDS-D-mesarthrocarpus_Contig90:39708..39915Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig90 39709..39915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig90.19.2

>prot_D-mesarthrocarpus_Contig90.19.2 ID=prot_D-mesarthrocarpus_Contig90.19.2|Name=mRNA_D-mesarthrocarpus_Contig90.19.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=266bp
MSGFSHGFRPIDGEAPPPTPSELERGGPYSLTGGVSQKDFRPDSADFASS
TRKRRRFPGPLAFHHLGSGAGSGAYAWGRSLHQQSDPGSFRYPSRSDLDS
EGSDGEGGEEALEQGGGEIAGGHFSKGPWLKLCDALDVPLPREGATNVEA
LQVFVKESPSPIAGVLAGQFDLRVPTVTAVIDSVSKPSETDLVAILVDPS
GRMEGYFHPQSLHDHGAELTAGAALVLQDVGSLSPILYPTLTLRCGSMCG
SMLWVWTASSRNCII*
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mRNA from alignment at D-mesarthrocarpus_Contig90:37701..40611+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig90.19.2 ID=mRNA_D-mesarthrocarpus_Contig90.19.2|Name=mRNA_D-mesarthrocarpus_Contig90.19.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2911bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig90:37701..40611+ (Discosporangium mesarthrocarpum MT17_79)
CTCAAACACCCGACACGAAACCCAACACCCACAAGGCCACACTCAAAGGT
GTTTCCAAGGCGATGTCTGGATTTTCTCATGGCTTTAGGCCCATTGATGG
AGAAGCTCCACCCCCTACACCTTCTGAGCTGGAACGTGGAGGCCCATACA
GTCTTACTGGAGGTGTTTCTCAGAAGGACTTTCGCCCTGACTCTGCTGAT
TTTGCTAGTAGCACAAGGAAAAGGCGGAGATTTCCGGGACCTCTGGCCTT
CCACCATTTGGGTTCTGGGGCTGGAAGTGGTGCTTATGCTTGGGGGAGGA
GCTTGCATCAGCAATCAGATCCTGGAAGGTGCGCTACCCTATGCTACGCC
CTCTTCTCTCGAGTCTAGCCTGACATAACCCTTGTCGCACTGGTTAGGGT
AGACTCGAGCTCCTTATAGTCGTTCCTTGTGGCCCTCGTACATTATTTAC
CTCCCGCCTAATTGATGCGCTTCAAGTTTTCGATATCCTTCCAGGTCTGA
TTTGGATAGTGAAGGCAGTGATGGTGAGGGTGGTGAGGAGGCCTTGGAGC
AAGGGGGTGGCGAGATTGCCGGAGGTCACTTCTCGAAGGGTCCGTGGCTA
AAGCTGTGCGATGCCCTCGATGTCCCTCTCCCCAGGGAGGGGGCGACCAA
CGTAGAAGGTCAGTGCGAGGTTTTGAAAAATGCAAGGGGTTGTTGATACA
GCAAGGTGCCAATATAGGAGTGAGTCTGACTGACCTGGAACCTGATGAAG
GCTATCAAACTCGTGTCTCTCTCACGCGATCTTCAGCAATCATGATTATT
AGCAATCACTGTGCAACCTCTGATGACGTGAAGATTGCAGCGTATACCCC
AGTCTTTTTTCAAGTGTGAATCCATCCTCCGCCTCTGAGTCTTTTGCCGC
TTACCGTACAACTGATCACTGGCTGGACAGGGAGAAAGAAGGGGAAAGAA
GGGATGCTTGGGCGATGCTACTCCGGGTCCTCAACCCGCCAATCTCCTTC
TCCTTGATCTCGTAAGCCCTGCAGGTGTTTGTCAAGGAATCACCGTCGCC
CATTGCTGGGGTGCTCGCAGGTCAATTTGATCTTCGTGTTCCAACTGTGA
CAGCGGTTATTGACTCCGTTAGTAAGCCCTCGGAGACCGACCTGGTGGCC
ATTCTTGTGGTGAGATAAGTGATGGAGTGGGGGGAAGTGGTCAGACGATA
CTGCTCTGTGGCACTGAGTTAGTCTAAGACCCATAATCTTCAGTATAGAA
AAAACACAAAATATCATTGAGGGGAGCATTGAGGGAGAGACACAGTCCAT
GCTCTCATTTCTCTATTTTTCCTCAACTACCTTACCCACTACATGATCGC
ATTAGCACATTGGTGATTGAAATCCTTCTACCCTGTAAATAAACGAATTA
TACATATACATTAATTCTATGTGTTGGTTGAAGTTTTAGTTATACATCAG
AGTACACACCTACAGTAAGACTTTTTTCAAGTTTGAACTTGAATTTAATG
TTTTGTAGACATGTTTGCAACCACTGCAATTTAACAAAAATATTGGTGGG
TAGGGCAAATGCTTGTTATGACAAGACAAATAATGTTTGAGACTGAATGC
CTCTCACAGGGAAAGCGATACAATCTGTTAACCATCAGTGCCAAAGGCTC
ACTCCTTTAGTGGAACCCTGTGTTCTCTACTTATTTTTTTTTTCCATCTT
TTGGCCAACACAAACAACCCTTACTACAGGGATGTACTACATTTCGATTT
GTTGAGGTATCTGCAAAGGTATCCATTGCAGAGAAGAAAAGGACAGTTTT
TTCCTACTTTTTTTCATTTTTTGTTGGAGGAGTTGAAAGTTCTTGAAGAT
CTCTACTCCGCAGCTCTACACTTTTTTGCACATTCCCCCTCAGGCTTCAC
TTTTGTCACACAGGACATGGGATATGGAACCTGGTTCATGTTTTCCCTGA
TTTTTGCTGTTGTTTTATTGATGTTGAAATTGTTTGGTGTTTACTATTTG
TGGTGCAGGACCCCTCTGGCCGCATGGAAGGATATTTCCACCCCCAGTCC
CTCCATGACCATGGGGCAGAGTTGACAGCTGGCGCAGCCCTGGTGCTACA
AGATGTGGGTAGCCTCAGCCCTATCCTATACCCAACCCTGACTCTAAGAT
GTGGGTCTATGTGTGGGTCTATGTTGTGGGTCTGGACTGCTTCCTCAAGA
AATTGCATAATCTAGACAATTAACATAAACATTTTTTTTGGTAGCTATTT
GGGATGGGTAGATTTTGCTCATGAGGGAGGTAGCTCAGACAGATTGTTGA
TGTTGGTCTTGAGCAATGGTCAGCAATAGTCAGCCCTGCAACTGGAACAG
GTGTGCCAGTTCAGTGAGCACAGAAGTAGCACCCATTCACATTGCGTGAC
CTTGCCATTCATGGCAGTGGCATATTGCTAACCCTTGACAAGAAAAAGAC
AACAAAAAGCTGGCAAAACGCAACACAGGAAAGAGAGCTCCAGCTTGTTT
GATACTGTTGGGAATGGGGAATGTGTCCGTGGACAACCCTTGGATGATTT
GCTCTTAACAGTTCTTAACATGTCTGATGCTTGGAGTGATTCAGCTTATT
CAATCTCAACCCTATAACCACACCTGAATATGTCAAGAAAACATGAAGGG
CTCCACAGTAAGCGTGACTGGGTTGGGCAGAAATGTGAAGGATCCTTCAC
TTCAACTGTCAATATTCAAGTGTCAATAGTCAACAGTCAACAGTCTTTTT
AAAAAAATATTTCTTGTAGAGTATATTTTTTGCTCAGGGCTTTTGTTTTT
GGGCAGTTCATCGCTTCCAGGTTCCATTTGCCCTTTGCTCGATTGTCGGA
TCTTTTGATTTTTGATTGCGATGCCTGTCTCTCCACAAACAGAATGACAT
TGCAGTTAGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig90:37701..40611+

>mRNA_D-mesarthrocarpus_Contig90.19.2 ID=mRNA_D-mesarthrocarpus_Contig90.19.2|Name=mRNA_D-mesarthrocarpus_Contig90.19.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=798bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig90:37701..40611+ (Discosporangium mesarthrocarpum MT17_79)
ATGTCTGGATTTTCTCATGGCTTTAGGCCCATTGATGGAGAAGCTCCACC
CCCTACACCTTCTGAGCTGGAACGTGGAGGCCCATACAGTCTTACTGGAG
GTGTTTCTCAGAAGGACTTTCGCCCTGACTCTGCTGATTTTGCTAGTAGC
ACAAGGAAAAGGCGGAGATTTCCGGGACCTCTGGCCTTCCACCATTTGGG
TTCTGGGGCTGGAAGTGGTGCTTATGCTTGGGGGAGGAGCTTGCATCAGC
AATCAGATCCTGGAAGTTTTCGATATCCTTCCAGGTCTGATTTGGATAGT
GAAGGCAGTGATGGTGAGGGTGGTGAGGAGGCCTTGGAGCAAGGGGGTGG
CGAGATTGCCGGAGGTCACTTCTCGAAGGGTCCGTGGCTAAAGCTGTGCG
ATGCCCTCGATGTCCCTCTCCCCAGGGAGGGGGCGACCAACGTAGAAGCC
CTGCAGGTGTTTGTCAAGGAATCACCGTCGCCCATTGCTGGGGTGCTCGC
AGGTCAATTTGATCTTCGTGTTCCAACTGTGACAGCGGTTATTGACTCCG
TTAGTAAGCCCTCGGAGACCGACCTGGTGGCCATTCTTGTGGACCCCTCT
GGCCGCATGGAAGGATATTTCCACCCCCAGTCCCTCCATGACCATGGGGC
AGAGTTGACAGCTGGCGCAGCCCTGGTGCTACAAGATGTGGGTAGCCTCA
GCCCTATCCTATACCCAACCCTGACTCTAAGATGTGGGTCTATGTGTGGG
TCTATGTTGTGGGTCTGGACTGCTTCCTCAAGAAATTGCATAATCTAG
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