mRNA_D-mesarthrocarpus_Contig8981.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig8981.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig8981.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: A0A6H5LKZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKZ1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.250e-27
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   10 SRVWSKVVVGLERLWHIRREIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            +  W ++ VG+ER+ H+RRE+K  FSS LE  +LKATRPE+  V+E  +  LL +A  L ++K   DCDPHEV+CSKL KK ME DWRTV KAL
Sbjct:  213 AEAWGRLEVGVERVIHVRREVKAVFSSELERCLLKATRPENIAVDEDCMLALLTQANRLAAVKACCDCDPHEVVCSKLRKKIMEQDWRTVVKAL 306          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: A0A835YL55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL55_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.500e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    4 RLSRVWSKVVVGLERLWHIRREIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            RL       ++ + R+ H RRE+K   SSSLE  +++ TRP+  PV+EA +  +L  A  LG  K      PH V+ SKL KK  E DWRT AK L
Sbjct:   55 RLESAGESALMYMSRVLHPRRELKAVLSSSLEGCLVRVTRPDTYPVDEALLQRVLVTARKLGDPKTFNGAAPHTVLASKLLKKVFERDWRTCAKGL 150          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: D8LLU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU8_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.530e-11
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1
Query:  163 LLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            LL +A  L ++K   DCDPHEV+CSKL KK ME DWRTV KAL
Sbjct:    4 LLTQANRLAAVKACCDCDPHEVVCSKLQKKIMEQDWRTVVKAL 46          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: A0A7S0GET9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GET9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.650e-8
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   58 IRREIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            I RE K   SS LE  +LKATRP+DTPV+  ++  L+       + +VS   D +  +  KL+KK +EDDWRT  K+L
Sbjct:   61 ISREFKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGV-----TYQVSGRFDLYSSVLRKLWKKMLEDDWRTKIKSL 133          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: A0A7S1UKU7_9STRA (Hypothetical protein n=3 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UKU7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.370e-7
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   55 HIRREIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            +I RE+K   SS LE  +LKATRP+DTPV+  ++  L+       + +VS   D +  +  KL+ K  E DWRT  KAL
Sbjct:  218 NIYREVKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGV-----TYQVSARYDLYTGVLRKLWAKTAEKDWRTKVKAL 291          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: B7G2T5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2T5_PHATC)

HSP 1 Score: 56.6 bits (135), Expect = 3.370e-7
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   55 HIRREIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            +I RE+K   SS LE  +LKATRP+DTPV+  ++  L+       + ++S   D ++ +  KL+ K  E DWRT  K+L
Sbjct:  244 NIYREVKGLTSSELEQVMLKATRPDDTPVKGKHVERLVGV-----TYQISPRYDIYDAVLRKLWGKMAEKDWRTTIKSL 317          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: A0A448ZTH1_9STRA (ENTH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTH1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.600e-7
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   55 HIRREIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            ++ RE+K   SS LE  +LKATRP+DTPV+  +   L+       + ++S   D ++ +  KL+ K  E DWRT  KAL
Sbjct:  218 NLYREVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGV-----TYQISARYDIYDAVLRKLWAKMAEKDWRTTIKAL 291          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: A0A1E7FBW9_9STRA (ENTH domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBW9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.250e-7
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   64 REIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            RE+K   SS LE  +LKATRP+DTPV+  +   L+       + ++S   D ++ +  KL+ K  E DWRT  KAL
Sbjct:   31 REVKGLTSSELEQVMLKATRPDDTPVKGKHAERLVGV-----TYQISGRYDIYDAVLRKLWAKMAEKDWRTTIKAL 101          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: A0A1Z5K193_FISSO (ENTH domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K193_FISSO)

HSP 1 Score: 55.1 bits (131), Expect = 1.170e-6
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   55 HIRREIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            ++ RE+K   SS LE  +LKAT+P+DTPV+  ++  L+     +G        D ++ +  KL+ K +E DWRT  KA+
Sbjct:  216 NLYREVKGLTSSELEQVMLKATKPDDTPVKGKHVERLVGVTYQIGP-----KFDIYDAVLRKLWGKMVERDWRTTMKAV 289          
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Match: A0A7S2EXR9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXR9_TRICV)

HSP 1 Score: 54.7 bits (130), Expect = 1.560e-6
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   55 HIRREIKTAFSSSLEAYILKATRPEDTPVEEAYITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL 291
            +I R+IK   SS LE  +LKAT+P+DTPV+  ++  L+       + ++S   D ++ +  K++ K  E DWRT  KAL
Sbjct:   94 NIYRDIKGLTSSELEQVMLKATKPDDTPVKGKHVERLVGV-----TYQISGRYDIYDAVLRKVWAKMTEKDWRTKVKAL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig8981.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5LKZ1_9PHAE6.250e-2755.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YL55_9STRA3.500e-1542.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LLU8_ECTSI2.530e-1165.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0GET9_9STRA1.650e-843.59Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1UKU7_9STRA3.370e-741.77Hypothetical protein n=3 Tax=Grammatophora oceanic... [more]
B7G2T5_PHATC3.370e-739.24Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A448ZTH1_9STRA4.600e-739.24ENTH domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A1E7FBW9_9STRA8.250e-740.79ENTH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1Z5K193_FISSO1.170e-636.71ENTH domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S2EXR9_TRICV1.560e-637.97Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig8981contigD-mesarthrocarpus_Contig8981:249..1069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr47192
Model size294
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.53e-08
EggNOG OGs2ECB5@1|root,2SI7J@2759|Eukaryota,2XBE3@2836|Bacillariophyta
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791051.522276-CDS-D-mesarthrocarpus_Contig8981:248..3531680791051.522276-CDS-D-mesarthrocarpus_Contig8981:248..353Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig8981 249..353 -
1680791051.5359404-CDS-D-mesarthrocarpus_Contig8981:693..7681680791051.5359404-CDS-D-mesarthrocarpus_Contig8981:693..768Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig8981 694..768 -
1680791051.548394-CDS-D-mesarthrocarpus_Contig8981:955..10691680791051.548394-CDS-D-mesarthrocarpus_Contig8981:955..1069Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig8981 956..1069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig8981.1.1prot_D-mesarthrocarpus_Contig8981.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig8981 249..1069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig8981.1.1

>prot_D-mesarthrocarpus_Contig8981.1.1 ID=prot_D-mesarthrocarpus_Contig8981.1.1|Name=mRNA_D-mesarthrocarpus_Contig8981.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=98bp
MRLSRVWSKVVVGLERLWHIRREIKTAFSSSLEAYILKATRPEDTPVEEA
YITELLDKAGHLGSLKVSYDCDPHEVICSKLFKKAMEDDWRTVAKAL*
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mRNA from alignment at D-mesarthrocarpus_Contig8981:249..1069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig8981.1.1 ID=mRNA_D-mesarthrocarpus_Contig8981.1.1|Name=mRNA_D-mesarthrocarpus_Contig8981.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=821bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig8981:249..1069- (Discosporangium mesarthrocarpum MT17_79)
ATGCGGCTGTCGAGAGTCTGGTCGAAAGTCGTTGTGGGGTTGGAGCGGTT GTGGCACATTCGGAGGGAGATCAAGACAGCGTTTTCTTCTTCATTGGAGG CTTACATTCTGAAAGTGCGTGTACGCAAGTGGCCACAGGATGAAGGATAG GATATTGACAGCCCAAAGCGCAGTAAACTCCGTAGAGTGATCGGTGGAGG AGCGAGCCCCCTACCCCTGTGCTCCTTTTGCATTTCTTGTTCTACAGCTT TCTGTTGACCCTCGAACATTTGCCTAATTCCACCTTCACCTCGGCACACA GGCTACCAGGCCAGAGGATACTCCAGTTGAAGAGGCCTACATTACAGAGT TGCTAGACAAGGCCGGCCACCTCGGGGTGAGAGGAGAGCATTTAGCAGTG CATTTCGAAACAGCGTTATGTAGAGGGCGGTTTGTCGTCTGAGTCAACGG AAATCCCTCTCTCGCGAGTCTTGATAGCTTTATTTCTTCCACAGTAATTC GAAATACGTATTTGATACCATGGGTACGTAGCACGTAGCACAGACCTCAT AAGGCGAAGATCTCGAAACTCTTCACGCAGATGTAAAAGATTTTCTCTCA TTGTGTTCATAAACCTAACTGATTATAATCGTTAGAGATACAACCAACCA TCTAATCTGCTGAAGTCTCTCTCTTTGTTTCCGTTCCTGCGTCATTCCCA ATGCCGCGTGAGCAAGAGCCTCAAGGTGTCATACGACTGTGACCCACATG AAGTCATCTGCTCAAAACTCTTCAAGAAGGCCATGGAGGACGACTGGCGG ACTGTTGCCAAGGCACTGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig8981:249..1069-

>mRNA_D-mesarthrocarpus_Contig8981.1.1 ID=mRNA_D-mesarthrocarpus_Contig8981.1.1|Name=mRNA_D-mesarthrocarpus_Contig8981.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=294bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig8981:249..1069- (Discosporangium mesarthrocarpum MT17_79)
ATGCGGCTGTCGAGAGTCTGGTCGAAAGTCGTTGTGGGGTTGGAGCGGTT
GTGGCACATTCGGAGGGAGATCAAGACAGCGTTTTCTTCTTCATTGGAGG
CTTACATTCTGAAAGCTACCAGGCCAGAGGATACTCCAGTTGAAGAGGCC
TACATTACAGAGTTGCTAGACAAGGCCGGCCACCTCGGGAGCCTCAAGGT
GTCATACGACTGTGACCCACATGAAGTCATCTGCTCAAAACTCTTCAAGA
AGGCCATGGAGGACGACTGGCGGACTGTTGCCAAGGCACTGTGA
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