mRNA_D-mesarthrocarpus_Contig8873.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig8873.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig8873.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: A0A7S1CGC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGC0_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.950e-78
Identity = 114/122 (93.44%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            TELDWVE GLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKP+KTLTTKERKKSRFGNAFHLTR ILRLTKL+VD+HVQYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKYRLMRQIRMCK
Sbjct:   54 TELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPIKTLTTKERKKSRFGNAFHLTREILRLTKLIVDTHVQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCK 175
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: A0A4D9CQ16_9STRA (PROCN domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ16_9STRA)

HSP 1 Score: 239 bits (610), Expect = 5.180e-77
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            TELDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKP KTLTTKERKKSRFGNAFHLTR ILRLTKL+VDSH+QYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKYRLMRQIRMCK
Sbjct:  102 TELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPTKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSHIQYRLGNVDAFQLADGLQYTFAHVGQLTGMYRYKYRLMRQIRMCK 223
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: A0A7S2STG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STG6_9STRA)

HSP 1 Score: 236 bits (602), Expect = 4.310e-76
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            TELDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR ILRLTKL+VDS VQYRLGNVDAFQL+DGLQY FAHVGQLTGMYRYKYRLMRQIRMCK
Sbjct:  167 TELDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTREILRLTKLIVDSMVQYRLGNVDAFQLSDGLQYTFAHVGQLTGMYRYKYRLMRQIRMCK 288
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: G3IPH0_CRIGR (Pre-mRNA-processing-splicing factor 8 n=2 Tax=Cricetulus griseus TaxID=10029 RepID=G3IPH0_CRIGR)

HSP 1 Score: 236 bits (601), Expect = 1.060e-75
Identity = 114/122 (93.44%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            T+LDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL R +LRLTKLVVDSHVQYRLGNVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCK
Sbjct:  138 TKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCK 259
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: A0A7S0BKD7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BKD7_9RHOD)

HSP 1 Score: 231 bits (589), Expect = 2.710e-75
Identity = 110/122 (90.16%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            TE+DWVE GLQVCRQG+NMLNLLIHRK L+YLHLDYNFNLKP+KTLTTKERKKSRFGNAFHL R ILRLTKL+VD HVQYRLGNVDAFQLADGLQYAF+HVGQLTGMYRYKY+LMRQIRMCK
Sbjct:   83 TEIDWVEAGLQVCRQGHNMLNLLIHRKKLNYLHLDYNFNLKPIKTLTTKERKKSRFGNAFHLCREILRLTKLIVDCHVQYRLGNVDAFQLADGLQYAFSHVGQLTGMYRYKYKLMRQIRMCK 204
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: A0A7S1T384_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T384_9CHLO)

HSP 1 Score: 231 bits (588), Expect = 2.960e-75
Identity = 112/122 (91.80%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            TELDWVE GLQVCRQGYNMLNLLIHRK+L YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL R ILRLTKLVVDS+VQ+RLGNVDA+QLADGLQY F+HVGQLTGMYRYKYRLMRQIRMCK
Sbjct:   68 TELDWVEAGLQVCRQGYNMLNLLIHRKNLDYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDSNVQFRLGNVDAYQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCK 189
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: Q1L779_OSMMO (PRP8P (Fragment) n=1 Tax=Osmerus mordax TaxID=8014 RepID=Q1L779_OSMMO)

HSP 1 Score: 232 bits (592), Expect = 6.110e-75
Identity = 111/122 (90.98%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            T+LDWVEVGLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL R +LRL+KLVVDSHVQYRLGNVDAFQL+DG+QY FAHVGQLTGMYRYKY+LMRQIRMCK
Sbjct:   39 TKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGIQYIFAHVGQLTGMYRYKYKLMRQIRMCK 160
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: R9R675_9FABA (Pre-mRNA-processing-splicing factor 8-like protein (Fragment) n=1 Tax=Caragana korshinskii TaxID=220689 RepID=R9R675_9FABA)

HSP 1 Score: 231 bits (589), Expect = 5.630e-74
Identity = 112/122 (91.80%), Postives = 118/122 (96.72%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            TELDWVE GLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL R ILRLTKLVVD++VQ+RLGNVDAFQLADGLQY F+HVGQLTGMYRYKYRLMRQIRMCK
Sbjct:   22 TELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCK 143
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: A0A6V7IZE5_9HYME (PROCN domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7IZE5_9HYME)

HSP 1 Score: 230 bits (586), Expect = 9.850e-74
Identity = 110/122 (90.16%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            T +DWVE GLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL R ILRLTKL++DSHVQYRL NVDAFQLADGLQY FAHVGQLTGMYRYKY+LMRQIRMCK
Sbjct:  155 TTIDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLIIDSHVQYRLNNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCK 276
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BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Match: A0A7C9DEL7_OPUST (PROCN domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DEL7_OPUST)

HSP 1 Score: 231 bits (588), Expect = 1.220e-73
Identity = 112/122 (91.80%), Postives = 118/122 (96.72%), Query Frame = 1 
Query:   13 TELDWVEVGLQVCRQGYNMLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*ILRLTKLVVDSHVQYRLGNVDAFQLADGLQYAFAHVGQLTGMYRYKYRLMRQIRMCK 378
            TELDWVE GLQVCRQGYNMLNLLIHRK+L+YLHLDYNFNLKPVKTLTTKERKKSRFGNAFHL R ILRLTKLVVD++VQ+RLGNVDAFQLADGLQY F+HVGQLTGMYRYKYRLMRQIRMCK
Sbjct:  142 TELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCK 263
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig8873.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CGC0_9STRA1.950e-7893.44Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4D9CQ16_9STRA5.180e-7794.26PROCN domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S2STG6_9STRA4.310e-7694.26Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
G3IPH0_CRIGR1.060e-7593.44Pre-mRNA-processing-splicing factor 8 n=2 Tax=Cric... [more]
A0A7S0BKD7_9RHOD2.710e-7590.16Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S1T384_9CHLO2.960e-7591.80Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
Q1L779_OSMMO6.110e-7590.98PRP8P (Fragment) n=1 Tax=Osmerus mordax TaxID=8014... [more]
R9R675_9FABA5.630e-7491.80Pre-mRNA-processing-splicing factor 8-like protein... [more]
A0A6V7IZE5_9HYME9.850e-7490.16PROCN domain-containing protein (Fragment) n=1 Tax... [more]
A0A7C9DEL7_OPUST1.220e-7391.80PROCN domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig8873contigD-mesarthrocarpus_Contig8873:705..1697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLJ8
PFAMsJAB,PRO8NT,PROCN,PROCT,PRP8_domainIV,RRM_4,U5_2-snRNA_bdg,U6-snRNA_bdg
Model size378
Max annot lvl2759|Eukaryota
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons2
Evalue1.76e-21
EggNOG OGsCOG5178@1|root,KOG1795@2759|Eukaryota
DescriptionU5 snRNA binding
Cds size141
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791040.4224844-UTR-D-mesarthrocarpus_Contig8873:704..8751680791040.4224844-UTR-D-mesarthrocarpus_Contig8873:704..875Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig8873 705..875 -
1680791040.459606-UTR-D-mesarthrocarpus_Contig8873:1631..16971680791040.459606-UTR-D-mesarthrocarpus_Contig8873:1631..1697Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig8873 1632..1697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791040.4360156-CDS-D-mesarthrocarpus_Contig8873:875..8771680791040.4360156-CDS-D-mesarthrocarpus_Contig8873:875..877Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig8873 876..877 -
1680791040.4492123-CDS-D-mesarthrocarpus_Contig8873:1492..16311680791040.4492123-CDS-D-mesarthrocarpus_Contig8873:1492..1631Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig8873 1493..1631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig8873.2.1prot_D-mesarthrocarpus_Contig8873.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig8873 876..1631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig8873.2.1

>prot_D-mesarthrocarpus_Contig8873.2.1 ID=prot_D-mesarthrocarpus_Contig8873.2.1|Name=mRNA_D-mesarthrocarpus_Contig8873.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=47bp
MLNLLIHRKSLSYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLTR*
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mRNA from alignment at D-mesarthrocarpus_Contig8873:705..1697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig8873.2.1 ID=mRNA_D-mesarthrocarpus_Contig8873.2.1|Name=mRNA_D-mesarthrocarpus_Contig8873.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=993bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig8873:705..1697- (Discosporangium mesarthrocarpum MT17_79)
TGGCTGCCGCAGACGGAGCTGGACTGGGTGGAAGTGGGACTGCAGGTGTG
TCGACAGGGCTACAACATGCTAAACTTGCTCATCCACCGGAAGAGCCTGA
GCTACCTGCACCTGGATTACAACTTCAACCTCAAACCGGTCAAGACCCTG
ACCACCAAAGAGAGGAAGAAGTCTCGCTTTGGGAATGCCTTCCACCTCAC
CAGGTGTGCACTGCCCTCTGCATGCGGCGTTCTTGTTTGTCCAAACTTCT
CTTTTCCTATTTTTCTTGTCTTTCCTTGTTTTCTCATGTTTCTTTTCTTC
CTCTTCTGTTCTTTTTTGCCTTTTGAAGCCTGATTTATTCCTGGTATTCT
TACTGCACTACCCCAGGCACCAAGTATCACCTAAACCCTCTTGTCCCCCC
TCTCTCCCCCACACCAAGGGGTAGTTGAGGACATGTGCTTGACCCTCGCT
CAACTTCCTTCTTACCTGCCCTGTTTCTTTTTCCTTCTGTTTCTTTTTTG
CATGGAACGGAATCAACCCAAAAATGAATAAACAAAAACAATCCGGGACA
TATGCAAATGTGAAAAAATGGTATGTTGTGGGATGGATGGTATTTTATGG
TATGGTATTTTATGGTATGGTACGGTATGGTATGGTATGGTGTGGTGTGG
TGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTGTGGTACGGTATGGGGTGC
TGACTTCTCCATGTGTGTGTGTCTGTTTTTTTCCCCTCCATCTTGTTCCA
TTTTTGGGGTGTGGGTTTCTGGTTTGTGGTGGGGGGGGGGGGGATGTGAC
ACACTCTCTGGAACGCAGAGAGATCCTCCGTCTGACGAAGCTGGTGGTGG
ACTCCCACGTGCAGTACCGTCTGGGGAACGTGGACGCCTTCCAGCTGGCA
GATGGGCTGCAGTATGCCTTTGCACACGTGGGGCAACTCACCGGCATGTA
CCGTTACAAGTACCGCCTCATGCGGCAGATACGCATGTGCAAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig8873:705..1697-

>mRNA_D-mesarthrocarpus_Contig8873.2.1 ID=mRNA_D-mesarthrocarpus_Contig8873.2.1|Name=mRNA_D-mesarthrocarpus_Contig8873.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=141bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig8873:705..1697- (Discosporangium mesarthrocarpum MT17_79)
ATGCTAAACTTGCTCATCCACCGGAAGAGCCTGAGCTACCTGCACCTGGA
TTACAACTTCAACCTCAAACCGGTCAAGACCCTGACCACCAAAGAGAGGA
AGAAGTCTCGCTTTGGGAATGCCTTCCACCTCACCAGGTAG
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