mRNA_D-mesarthrocarpus_Contig11279.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11279.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig11279.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: D7FNB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB1_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 5.460e-15
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   73 GRAWRLLTCWSTTFECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVA 249
            G AW+LLTCWS T + L +V + NGVGG+YQGMRAK+L +VL SALLFLGYE+++EV+A
Sbjct:  298 GVAWQLLTCWSGTVDVLVSVCRRNGVGGMYQGMRAKLLHTVLTSALLFLGYERLLEVIA 356
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: A0A087SVA3_STEMI (Peroxisomal membrane protein PMP34 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087SVA3_STEMI)

HSP 1 Score: 53.5 bits (127), Expect = 4.690e-6
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  130 VVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVAKVIG 261
            +++TNGV GLY+G+ AK+LQ+VL +AL+FL YEKI   V  ++G
Sbjct:    5 IIRTNGVKGLYKGLEAKLLQTVLTAALMFLCYEKIAAFVFHIMG 48
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: UPI0007383B9B (peroxisomal membrane protein PMP34 isoform X1 n=4 Tax=Opiinae TaxID=68883 RepID=UPI0007383B9B)

HSP 1 Score: 57.0 bits (136), Expect = 1.320e-5
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   73 GRAWRLLTCWSTTFECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVAKVI 258
            G  ++ L   + T + L  +++T G+GGLY+GM AK+LQ+VL +AL+FL YEKI + V +++
Sbjct:  236 GHNYKNLPSDAGTIQMLLYILKTQGLGGLYKGMEAKLLQTVLTAALMFLAYEKISKFVFRIL 297
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: A0A835CTX0_9HYME (Uncharacterized protein n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A835CTX0_9HYME)

HSP 1 Score: 57.0 bits (136), Expect = 1.330e-5
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  109 TFECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVAKVI 258
            T + L  +++ NG+GGLY+GM AK+LQ+VL +AL+FL YEKI   V +++
Sbjct:  251 TLQILLYILKKNGIGGLYKGMEAKLLQTVLTAALMFLAYEKISRFVFRIL 300
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: UPI00077FB6C5 (peroxisomal membrane protein PMP34 isoform X1 n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FB6C5)

HSP 1 Score: 56.2 bits (134), Expect = 2.510e-5
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  106 TTFECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIV 237
            TT   L  +++TNGV GLY+G+ AK+LQ+VL +AL+FL YEKIV
Sbjct:  259 TTLRILSYIIKTNGVRGLYKGLEAKLLQTVLTTALMFLCYEKIV 302
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: A0A6P3UN02_BOMIM (peroxisomal membrane protein PMP34 isoform X1 n=10 Tax=Bombus TaxID=28641 RepID=A0A6P3UN02_BOMIM)

HSP 1 Score: 55.5 bits (132), Expect = 4.640e-5
Identity = 23/50 (46.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  109 TFECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVAKVI 258
            + E L  +++  G+GGLY+GM AK+LQ++L +AL+FL YEKI  +V +++
Sbjct:  268 SLEILFYILKKQGIGGLYKGMEAKLLQTILTAALMFLSYEKISRLVFRIL 317
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: UPI0015B212E0 (peroxisomal membrane protein PMP34-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015B212E0)

HSP 1 Score: 54.7 bits (130), Expect = 5.350e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  106 TTFECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVAKVIG 261
            T  +    +++TNGV GLY+G+ AK+LQ+VL +AL+FL YEKI   V  ++G
Sbjct:  187 TMLQIFSYIIRTNGVKGLYKGLEAKLLQTVLTAALMFLCYEKIAAFVFHIMG 238
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: A0A224XXH9_9HEMI (Putative mitochondrial carrier protein n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XXH9_9HEMI)

HSP 1 Score: 52.0 bits (123), Expect = 5.630e-5
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  109 TFECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVAKVIG 261
            T + L  V++  GV GLY+GM AK+LQ+VL +AL+F+ YEKI   V +++G
Sbjct:   60 TIQLLIYVLKRQGVKGLYKGMEAKLLQTVLTTALMFMTYEKIAAFVFRLMG 110
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: A0A653CTB5_CALMS (Uncharacterized protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653CTB5_CALMS)

HSP 1 Score: 54.7 bits (130), Expect = 7.010e-5
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  109 TFECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVAKVI 258
            T   L T+++  G  GLYQGM +K+LQ+VLA+AL+F+ YEKIV+ V K++
Sbjct:  228 TAALLMTILKKQGAKGLYQGMESKLLQTVLATALMFVMYEKIVQFVFKLL 277
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BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Match: A0A0L7QPR7_9HYME (Peroxisomal membrane protein PMP34 n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QPR7_9HYME)

HSP 1 Score: 54.7 bits (130), Expect = 7.730e-5
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  115 ECLHTVVQTNGVGGLYQGMRAKMLQSVLASALLFLGYEKIVEVVAKVI 258
            + L  +++T G  GLY+GM AK+LQ+VL +AL+FL YEKIV  V +++
Sbjct:  253 QILFYILKTQGAAGLYKGMEAKLLQTVLTAALMFLAYEKIVRFVFRIL 300
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11279.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FNB1_ECTSI5.460e-1566.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A087SVA3_STEMI4.690e-654.55Peroxisomal membrane protein PMP34 (Fragment) n=1 ... [more]
UPI0007383B9B1.320e-543.55peroxisomal membrane protein PMP34 isoform X1 n=4 ... [more]
A0A835CTX0_9HYME1.330e-550.00Uncharacterized protein n=1 Tax=Aphidius gifuensis... [more]
UPI00077FB6C52.510e-559.09peroxisomal membrane protein PMP34 isoform X1 n=2 ... [more]
A0A6P3UN02_BOMIM4.640e-546.00peroxisomal membrane protein PMP34 isoform X1 n=10... [more]
UPI0015B212E05.350e-548.08peroxisomal membrane protein PMP34-like n=1 Tax=St... [more]
A0A224XXH9_9HEMI5.630e-549.02Putative mitochondrial carrier protein n=1 Tax=Pan... [more]
A0A653CTB5_CALMS7.010e-552.00Uncharacterized protein n=1 Tax=Callosobruchus mac... [more]
A0A0L7QPR7_9HYME7.730e-550.00Peroxisomal membrane protein PMP34 n=1 Tax=Habropo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11279contigD-mesarthrocarpus_Contig11279:1166..3177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNB1
PFAMsMito_carr
Model size970
Max annot lvl2759|Eukaryota
KEGG koko:K13354
KEGG TC2.A.29.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorymitochondrion
Exons3
Evalue2.32e-18
EggNOG OGsCOG4266@1|root,KOG0769@2759|Eukaryota
DescriptionFMN transmembrane transporter activity
Cds size333
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789249.9560437-UTR-D-mesarthrocarpus_Contig11279:1165..17541680789249.9560437-UTR-D-mesarthrocarpus_Contig11279:1165..1754Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11279 1166..1754 -
1680789249.997186-UTR-D-mesarthrocarpus_Contig11279:3129..31771680789249.997186-UTR-D-mesarthrocarpus_Contig11279:3129..3177Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11279 3130..3177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789249.969216-CDS-D-mesarthrocarpus_Contig11279:1754..18951680789249.969216-CDS-D-mesarthrocarpus_Contig11279:1754..1895Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11279 1755..1895 -
1680789249.9786775-CDS-D-mesarthrocarpus_Contig11279:2161..22781680789249.9786775-CDS-D-mesarthrocarpus_Contig11279:2161..2278Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11279 2162..2278 -
1680789249.9889326-CDS-D-mesarthrocarpus_Contig11279:3054..31291680789249.9889326-CDS-D-mesarthrocarpus_Contig11279:3054..3129Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11279 3055..3129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11279.1.1prot_D-mesarthrocarpus_Contig11279.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11279 1755..3129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11279.1.1

>prot_D-mesarthrocarpus_Contig11279.1.1 ID=prot_D-mesarthrocarpus_Contig11279.1.1|Name=mRNA_D-mesarthrocarpus_Contig11279.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
MLLSNGLRGRAWRLLTCWSTTFECLHTVVQTNGVGGLYQGMRAKMLQSVL
ASALLFLGYEKIVEVVAKVIGGYEGCHAGGGARGKIPDGIARGGEGLCTA
PPSPPPPSSR*
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mRNA from alignment at D-mesarthrocarpus_Contig11279:1166..3177-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11279.1.1 ID=mRNA_D-mesarthrocarpus_Contig11279.1.1|Name=mRNA_D-mesarthrocarpus_Contig11279.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2012bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11279:1166..3177- (Discosporangium mesarthrocarpum MT17_79)
CAGGTGTTATCGGCACCCAGGCAGTGCGGCAGCGGCGGTGGCGGTGGCAT
GCTGTTATCCAATGGGTTGAGGGGGCGGGCGTGGAGGCTCCTCACCTGTT
GGTCGACTACCTTTGAGTGCTTGGTGAGGGCACGAGCTCAGTGCACCCGC
ATGTCAGCGATATTGCTACTGAAGTGCTTGGGGTCAGGGTTAGGGTTGGG
GTTGGGGTTAGGATTAGGGTTAGGTTTAGGGTCAGGGTCAGGGTCAAGAG
TTAGGGTTAGGTTTAGGGTCAGGGTCAGGGTCAGAGTCATGGCTGGCACT
TGACGTCCTTCTGACCCTGTCAATGAGATGCCCTGGCCATGCGTCTGCGG
TGCTGCCGCCAGCCAGCTGGCAACTTTGTCCCTTTAGTTGGGGGCTTGGT
TGACAAAACACTCTTAGGTTGGGTTGGTGCCGGCTCTCCTCTGAACCTAG
CAGGGAAAGACCCTCCTGGTCTCTTCTGTAGTGACTACGAATTGTATATT
TGTGGGGTTAGGGCTGGGGTTAGGGTTAGGGTTAGGGTTAGTGTTGAGGT
TAGAGTTAGGGTGAGGGTTAGAGTGGGGTAGTGTACCAAGAGGTGAATGG
GAGGGGGAGATGGGGGGTGGGAGGGGGGGGGAAGCGGGAGAGAACCCACC
TCGTTGTGTTTTGCTTTGATGGTGAGTGTGAGGCTCCACCGGATACAGTC
TTTTTTTCTGTTGTTTTGATACCTGGGAGTACTTGAGGAATACTATGGTA
CCAGGTATTTTTTACACCCTCTCCCCCTCTCTTCTCTCGGGAAGCGCCCC
CTCAGTGCAAATGAGCATGGATCTAATCTAACGGGAACTCTTCTGGCTCC
CTCGCTCCCCCCCTCCCCCCCCCCCCCTGGCCTGTGCCCACGAACCCAGC
ACACTGTGGTGCAGACGAATGGTGTGGGGGGCCTGTACCAGGGCATGCGG
GCAAAGATGCTTCAGTCGGTGCTGGCGAGTGCTCTCCTTTTCCTAGGGTA
TGAGAAGATTGTTGAGGTGAGCCCTTTACTGCGCCGTGTCGATTTTATTG
TCGTTTTGCCCTTTCGCCTTTACTATCTTGTTTGCTTGGTGGGTTTGCTT
TTGCCCCCCCCCCCCCCCCCCCAACTCCCAACCCCTGCCCCCTCCCCCAC
ACCCTGTGCAAATGGCAACCTCCCCGCTTCCATGGAAACACCTTACTCCA
TTCAGGACATGACAGGACCTTTCCTGAACCCGAATCTCTTATCTCTTATT
GGCTTTGCCCCCCTTTTCAACCCTGCAACCAGGTTGTCGCTAAGGTTATC
GGGGGCTACGAGGGGTGTCATGCAGGGGGAGGTGCTAGGGGGAAGATTCC
CGACGGGATTGCTAGAGGAGGGGAAGGCCTTTGCACAGCTCCTCCTTCCC
CACCGCCGCCCTCGTCCCGCTGAGAAGGAAGGGCAGGTCAAAAAACGCGG
TGGGGAAGTACAAGATTATTTCATCAAAGTAATTTTTTTTTACTCACGCT
TGAAGCATTAGTGAGAATCGGTGACAACCATGACATTGCGGGTTGAGGGG
CAGTTGGTCATGGGGACTGAGGCTCGAGAGTATGAAGGGCATGTTAGGCT
TACTTTTTGGTATTATGTTTGCATACACGTTCGTTCCTGTGATAGAGTGA
TAGGTGGAGGGCAGGTCCTGATCGGTTGGAGATTTGAAGGGAAGCGATCT
GATTCGCTGAATGATTCGACTGAAAAACCCGCTATTGAGAGGACCATAAC
AGTATTCAGTATTCCTTTCATTTGAAAGTAGACATGGGCGGCTGAGACCG
ATCAAATCAAGATTACTCTGTCATCGGGCAAGCGGAGGGCGCTTTTGTGG
ACAGGGCTCCGGCGACAGGAAATTTCGTTGAAAAGTTCTCTGTGGCACCA
GGGGCGGTTAGGGCACCTCATCTTCCCGGAATTTTTGGGTGGGGAACGAT
CAACAAAGAGGAGCTATCTCGGAGTGCTTGACGCATCCAAGCAACAATGC
ATCTGATTTTCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11279:1166..3177-

>mRNA_D-mesarthrocarpus_Contig11279.1.1 ID=mRNA_D-mesarthrocarpus_Contig11279.1.1|Name=mRNA_D-mesarthrocarpus_Contig11279.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11279:1166..3177- (Discosporangium mesarthrocarpum MT17_79)
ATGCTGTTATCCAATGGGTTGAGGGGGCGGGCGTGGAGGCTCCTCACCTG
TTGGTCGACTACCTTTGAGTGCTTGCACACTGTGGTGCAGACGAATGGTG
TGGGGGGCCTGTACCAGGGCATGCGGGCAAAGATGCTTCAGTCGGTGCTG
GCGAGTGCTCTCCTTTTCCTAGGGTATGAGAAGATTGTTGAGGTTGTCGC
TAAGGTTATCGGGGGCTACGAGGGGTGTCATGCAGGGGGAGGTGCTAGGG
GGAAGATTCCCGACGGGATTGCTAGAGGAGGGGAAGGCCTTTGCACAGCT
CCTCCTTCCCCACCGCCGCCCTCGTCCCGCTGA
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