mRNA_D-mesarthrocarpus_Contig1127.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1127.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig1127.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1127.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1127contigD-mesarthrocarpus_Contig1127:1470..2774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789249.4343762-UTR-D-mesarthrocarpus_Contig1127:1469..14741680789249.4343762-UTR-D-mesarthrocarpus_Contig1127:1469..1474Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1127 1470..1474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789249.4436562-CDS-D-mesarthrocarpus_Contig1127:1474..15421680789249.4436562-CDS-D-mesarthrocarpus_Contig1127:1474..1542Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1127 1475..1542 +
1680789249.453774-CDS-D-mesarthrocarpus_Contig1127:2551..27741680789249.453774-CDS-D-mesarthrocarpus_Contig1127:2551..2774Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1127 2552..2774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1127.1.1prot_D-mesarthrocarpus_Contig1127.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1127 1475..2774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1127.1.1

>prot_D-mesarthrocarpus_Contig1127.1.1 ID=prot_D-mesarthrocarpus_Contig1127.1.1|Name=mRNA_D-mesarthrocarpus_Contig1127.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=97bp
MEALVRRTGELSRISGQRRRSNRKMYSQEALLAGHYHLPEYPMSHFQNQS
LAQGQHQSHYPPQSQPQLSVSQARIERLLQHNRRNRAEGKEELSHAW
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mRNA from alignment at D-mesarthrocarpus_Contig1127:1470..2774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1127.1.1 ID=mRNA_D-mesarthrocarpus_Contig1127.1.1|Name=mRNA_D-mesarthrocarpus_Contig1127.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1305bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1127:1470..2774+ (Discosporangium mesarthrocarpum MT17_79)
AGGAGATGGAGGCGCTGGTGAGAAGGACCGGGGAGCTCTCCAGGATCTCT
GGGCAGAGAAGGCGTTCCAACAGGTACTACTTCAACACTATGGATTTTTT
CATGCCCACACCCCATCAAAACCCACTCCACTACCCTCCACTGTTCACAG
TCCTGACCACACCACTCCACTCTGCCCTGCCCTACACCACCCCACCCTCC
GTGCCTCTGCTTCTACCAACCAGCCCACCAGCCTCATGCTTAACCCTACC
TAAAGAGTATACAGTATATTGTCACGGTATAGGAACATTTGCAGAGAACA
GTTACAGTATACCTTAAGAGTATATGGTATACTGTTGCATTAAAGTGACA
CAGTATACCGTAGAGTATACAGTGCACTGTCACAGTATAGGAACAACTGC
AGAGAATTGTGACAGTATTCCTTTGAGCATGCAGTGTAGATCTACGGTGT
CCCTTCTCGTAAAGAGTATGCTTCCACAGTATACCTAGAGCATACAGTGC
ACGATCAAGATATATGTACTGCTACAATATACCGCTCCAGCATGCCTTAG
AGTACATGGTATACTGCTACATTATGTCTACACTTTATGCTGTGGAGTAT
GTAATATACTGCCACGGCACTTCTGCAGTATGCTGATACAGCATGCCTTA
GAGCATACGGTGCGCTGCTGTGGTGTGTGCCAGCTTGCCCCGTAGCTGCA
CGTCGGCCCGCCCCGTAGCCACTCAACCTGCTCATTTCTTACTCCCTTTC
ATGGCGTTCTACCTGATGATTCCCCTTCGGATCTGTGCCTTTTTTTTTTT
TACGGTGGTTTGGGTTAGGGCTAGGGCTAAGGCTAGGGCTGGGGTTGTGT
TTTTGGTGGTGGTTGGGGTTAGGGCCAGGGTTAGGGCCCGGGTTGGGACG
CTGTCTTGCGGGCGTGGATCAGGTCTCCATCTCTATTTTTTCTTTCTTCA
TTTTTTCTCATTTTTTTTCTCGCAAGTGCTACTACTGTACTGTACAAGGA
GCGCATTGCAGCACTTAGCATAATGTGGTGCATAGACAAGTAGATGCTGA
TCTCACCTTATCTTGCCCAACCACCACACCAGGAAGATGTACTCGCAGGA
AGCCTTGCTTGCGGGGCACTATCACCTCCCAGAGTACCCAATGAGCCATT
TCCAGAACCAGTCCCTGGCCCAGGGGCAACACCAAAGCCACTACCCGCCC
CAGAGCCAGCCCCAGCTCAGTGTTTCCCAAGCCCGAATCGAGAGGCTCCT
CCAGCACAATAGGAGAAACAGGGCTGAAGGTAAGGAAGAGTTGAGCCATG
CCTGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1127:1470..2774+

>mRNA_D-mesarthrocarpus_Contig1127.1.1 ID=mRNA_D-mesarthrocarpus_Contig1127.1.1|Name=mRNA_D-mesarthrocarpus_Contig1127.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=291bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1127:1470..2774+ (Discosporangium mesarthrocarpum MT17_79)
ATGGAGGCGCTGGTGAGAAGGACCGGGGAGCTCTCCAGGATCTCTGGGCA
GAGAAGGCGTTCCAACAGGAAGATGTACTCGCAGGAAGCCTTGCTTGCGG
GGCACTATCACCTCCCAGAGTACCCAATGAGCCATTTCCAGAACCAGTCC
CTGGCCCAGGGGCAACACCAAAGCCACTACCCGCCCCAGAGCCAGCCCCA
GCTCAGTGTTTCCCAAGCCCGAATCGAGAGGCTCCTCCAGCACAATAGGA
GAAACAGGGCTGAAGGTAAGGAAGAGTTGAGCCATGCCTGG
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