mRNA_D-mesarthrocarpus_Contig11261.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11261.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig11261.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11261.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11261contigD-mesarthrocarpus_Contig11261:1848..2373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size526
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789249.1477191-UTR-D-mesarthrocarpus_Contig11261:1847..19781680789249.1477191-UTR-D-mesarthrocarpus_Contig11261:1847..1978Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11261 1848..1978 -
1680789249.1717134-UTR-D-mesarthrocarpus_Contig11261:2302..23731680789249.1717134-UTR-D-mesarthrocarpus_Contig11261:2302..2373Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11261 2303..2373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789249.1586905-CDS-D-mesarthrocarpus_Contig11261:1978..23021680789249.1586905-CDS-D-mesarthrocarpus_Contig11261:1978..2302Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11261 1979..2302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11261.2.1prot_D-mesarthrocarpus_Contig11261.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11261 1979..2302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11261.2.1

>prot_D-mesarthrocarpus_Contig11261.2.1 ID=prot_D-mesarthrocarpus_Contig11261.2.1|Name=mRNA_D-mesarthrocarpus_Contig11261.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=108bp
MARPSDFFPYLTPCDAFLFCFYFYFFLYVLKPLPSGRVRGALPPPRLFHL
SWVTSSMAHKHTNERKKEKEPLHKVHRELFFEHMSPGYMLTFSSACMANS
SPRSRVW*
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mRNA from alignment at D-mesarthrocarpus_Contig11261:1848..2373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11261.2.1 ID=mRNA_D-mesarthrocarpus_Contig11261.2.1|Name=mRNA_D-mesarthrocarpus_Contig11261.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=526bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11261:1848..2373- (Discosporangium mesarthrocarpum MT17_79)
GTGAAGTTGAGATTTTCAATGACAGGCGTGACTAGGGTTAGGGTTAGGGT
TAGGGCTTTTTTTGTGTGGGCATGGCGAGGCCCTCTGACTTTTTTCCTTA
CCTTACCCCGTGTGATGCTTTTTTGTTTTGTTTTTATTTTTATTTTTTTT
TGTATGTTTTGAAACCCTTGCCTTCGGGCAGGGTGCGGGGTGCCCTACCC
CCCCCACGCCTTTTTCACCTTTCATGGGTGACAAGCAGCATGGCCCACAA
ACACACAAACGAAAGAAAAAAGGAAAAAGAACCACTCCACAAGGTGCACA
GAGAGTTGTTTTTTGAGCACATGTCCCCTGGGTACATGCTCACCTTTTCG
TCTGCATGCATGGCAAACTCTTCCCCACGAAGTAGGGTGTGGTAATGCCC
TCACTTCCTCCCTCCCCCCTTTCTCCCTCGCCCCCTAAAACACGGTACCA
TCACCTTCTCTGGCCCTGCTGCCCCCCTAACTACAACTGTGACCCTCAAC
CCAATCCTTTCTTTCCCTGTCCGGAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11261:1848..2373-

>mRNA_D-mesarthrocarpus_Contig11261.2.1 ID=mRNA_D-mesarthrocarpus_Contig11261.2.1|Name=mRNA_D-mesarthrocarpus_Contig11261.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=324bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11261:1848..2373- (Discosporangium mesarthrocarpum MT17_79)
ATGGCGAGGCCCTCTGACTTTTTTCCTTACCTTACCCCGTGTGATGCTTT
TTTGTTTTGTTTTTATTTTTATTTTTTTTTGTATGTTTTGAAACCCTTGC
CTTCGGGCAGGGTGCGGGGTGCCCTACCCCCCCCACGCCTTTTTCACCTT
TCATGGGTGACAAGCAGCATGGCCCACAAACACACAAACGAAAGAAAAAA
GGAAAAAGAACCACTCCACAAGGTGCACAGAGAGTTGTTTTTTGAGCACA
TGTCCCCTGGGTACATGCTCACCTTTTCGTCTGCATGCATGGCAAACTCT
TCCCCACGAAGTAGGGTGTGGTAA
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