mRNA_D-mesarthrocarpus_Contig11247.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11247.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig11247.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig11247.1.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.510e-8
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 SRLFYVKQKVGEYYAKGLVKLGNPIAKFEA--------------GWGIGRMLHLAEGAKPVLARNHWQEVDLINGIRGVVKVVV 210
            +RLFY K++V +Y  K L +L NP+A+  A                G+ R L+LA+GAK +L++N +Q+V L+NGIRG V  +V
Sbjct: 1355 TRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELV 1438
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BLAST of mRNA_D-mesarthrocarpus_Contig11247.1.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.100e-7
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    7 LFYVKQKVGEYYAKGLVKLGNPIAKFEA--------------GWGIGRMLHLAEGAKPVLARNHWQEVDLINGIRGVVKVVV 210
            LFY K++V +Y  K L +L NP+A+  A                G+ R L+LA+GAK +L++N +Q+V L+NGIRG V  +V
Sbjct:   52 LFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELV 133
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11247.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L976_9PHAE1.510e-840.48ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6H5JUS2_9PHAE1.100e-740.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11247contigD-mesarthrocarpus_Contig11247:1418..1636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789247.6813486-CDS-D-mesarthrocarpus_Contig11247:1417..16361680789247.6813486-CDS-D-mesarthrocarpus_Contig11247:1417..1636Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11247 1418..1636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11247.1.1prot_D-mesarthrocarpus_Contig11247.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11247 1418..1636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11247.1.1

>prot_D-mesarthrocarpus_Contig11247.1.1 ID=prot_D-mesarthrocarpus_Contig11247.1.1|Name=mRNA_D-mesarthrocarpus_Contig11247.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=73bp
SRLFYVKQKVGEYYAKGLVKLGNPIAKFEAGWGIGRMLHLAEGAKPVLAR
NHWQEVDLINGIRGVVKVVVYV*
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mRNA from alignment at D-mesarthrocarpus_Contig11247:1418..1636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11247.1.1 ID=mRNA_D-mesarthrocarpus_Contig11247.1.1|Name=mRNA_D-mesarthrocarpus_Contig11247.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11247:1418..1636- (Discosporangium mesarthrocarpum MT17_79)
TCAAGGCTGTTCTACGTCAAGCAGAAGGTGGGAGAATATTATGCCAAGGG
GTTGGTGAAGCTGGGGAATCCAATTGCCAAGTTTGAGGCAGGCTGGGGGA
TTGGAAGGATGCTTCACCTTGCTGAAGGGGCCAAACCAGTGCTCGCACGT
AATCACTGGCAAGAGGTGGACTTGATCAACGGAATTAGGGGAGTGGTGAA
GGTCGTCGTGTACGTATAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11247:1418..1636-

>mRNA_D-mesarthrocarpus_Contig11247.1.1 ID=mRNA_D-mesarthrocarpus_Contig11247.1.1|Name=mRNA_D-mesarthrocarpus_Contig11247.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11247:1418..1636- (Discosporangium mesarthrocarpum MT17_79)
TCAAGGCTGTTCTACGTCAAGCAGAAGGTGGGAGAATATTATGCCAAGGG
GTTGGTGAAGCTGGGGAATCCAATTGCCAAGTTTGAGGCAGGCTGGGGGA
TTGGAAGGATGCTTCACCTTGCTGAAGGGGCCAAACCAGTGCTCGCACGT
AATCACTGGCAAGAGGTGGACTTGATCAACGGAATTAGGGGAGTGGTGAA
GGTCGTCGTGTACGTATAG
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